Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PADI1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 29943 peptidyl arginine deiminase, type I chr1 + 17526620 - 17532120 17531620 Transcription Factor Binding Sites   Download all TFBS in the PADI1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXO4_forkhead_DBD_dimeric_14_1 SELEX - 17528583 17528596 6.0E-06 AACAACATTTTTAC 14 POU3F3_POU_DBD_monomeric_12_1 SELEX - 17527495 17527506 3.0E-06 ATGCATAAGTTA 12 SOX2_HMG_full_dimeric_17_1 SELEX + 17527373 17527389 5.0E-06 GAATACTTTCATTATTT 17 SRY_HMG_DBD_dimeric_13_2 SELEX - 17528603 17528615 2.0E-06 TGAATCACTTTCA 13 POU3F2_POU_DBD_monomeric_13_1 SELEX - 17527495 17527507 6.0E-06 AATGCATAAGTTA 13 POU3F4_POU_DBD_monomeric_11_1 SELEX - 17527495 17527505 3.0E-06 TGCATAAGTTA 11 HNF1B_MA0153.1 JASPAR + 17527487 17527498 0.0E+00 CTAATGTTTAAC 12 SOX8_HMG_full_dimeric_15_1 SELEX - 17528579 17528593 3.0E-06 AACATTTTTACTGTT 15 SOX8_HMG_full_dimeric_17_1 SELEX + 17534721 17534737 7.0E-06 CATCACAGGAAGTGATT 17 SOX8_HMG_full_dimeric_17_1 SELEX - 17534721 17534737 4.0E-06 AATCACTTCCTGTGATG 17 EWSR1-FLI1_MA0149.1 JASPAR + 17528469 17528486 1.0E-05 GGAGGCGGGGAAGGAATA 18 Sox17_HMG_DBD_dimeric_15_1 SELEX + 17527374 17527388 6.0E-06 AATACTTTCATTATT 15 Sox17_HMG_DBD_dimeric_15_1 SELEX + 17528579 17528593 1.0E-05 AACAGTAAAAATGTT 15 Sox17_HMG_DBD_dimeric_15_1 SELEX - 17528579 17528593 6.0E-06 AACATTTTTACTGTT 15 SOX15_HMG_full_dimeric_15_3 SELEX - 17528602 17528616 4.0E-06 TTGAATCACTTTCAT 15 Creb5_bZIP_DBD_dimeric_12_1 SELEX + 17534716 17534727 7.0E-06 GATGACATCACA 12 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 17528584 17528597 5.0E-06 TAAAAATGTTGTTT 14 Pax4_MA0068.1 JASPAR - 17527361 17527390 5.0E-06 GAAATAATGAAAGTATTCTTACACATACAC 30 TCF7L1_HMG_full_monomeric_12_1 SELEX + 17528344 17528355 3.0E-06 CAAGTTCAAAGA 12 NFKB2_NFAT_DBD_dimeric_13_1 SELEX - 17534634 17534646 8.0E-06 GGGGGCTTCCCCC 13 JDP2_bZIP_full_dimeric_12_1 SELEX + 17534716 17534727 6.0E-06 GATGACATCACA 12 LEF1_HMG_DBD_monomeric_15_1 SELEX + 17528344 17528358 8.0E-06 CAAGTTCAAAGAGAC 15 IRF1_MA0050.1 JASPAR - 17533752 17533763 5.0E-06 GGAAATGAAACC 12 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 17528584 17528597 8.0E-06 TAAAAATGTTGTTT 14 Sox17_HMG_DBD_dimeric_15_2 SELEX - 17528602 17528616 8.0E-06 TTGAATCACTTTCAT 15 ESR1_MA0112.2 JASPAR - 17528419 17528438 1.0E-05 CTTTTAAGACACCATGACCT 20 OTX2_homeodomain_DBD_monomeric_8_1 SELEX + 17527334 17527341 7.0E-06 TTAATCCT 8 CREB3_bZIP_full_dimeric_14_1 SELEX - 17534715 17534728 8.0E-06 CTGTGATGTCATCC 14 ATF4_bZIP_DBD_dimeric_13_1 SELEX - 17527385 17527397 6.0E-06 GTCTGATGAAATA 13 SOX18_HMG_full_dimeric_15_1 SELEX + 17528579 17528593 4.0E-06 AACAGTAAAAATGTT 15 NFATC1_NFAT_full_dimeric_20_1 SELEX + 17527573 17527592 9.0E-06 AATGGAAACCCAGCTTGCCA 20 Tcf7_HMG_DBD_monomeric_12_1 SELEX + 17528344 17528355 9.0E-06 CAAGTTCAAAGA 12 SOX7_HMG_full_dimeric_17_1 SELEX - 17528578 17528594 5.0E-06 CAACATTTTTACTGTTG 17 TEAD3_TEA_DBD_dimeric_17_1 SELEX - 17527352 17527368 1.0E-05 ACATACACCTCATACCA 17 TEAD3_TEA_DBD_monomeric_8_1 SELEX + 17527445 17527452 1.0E-05 ACATTCCA 8 PITX1_homeodomain_full_monomeric_9_1 SELEX + 17527333 17527341 9.0E-06 CTTAATCCT 9 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 17527375 17527389 7.0E-06 AAATAATGAAAGTAT 15 ERF_ETS_DBD_monomeric_10_1 SELEX + 17534725 17534734 9.0E-06 ACAGGAAGTG 10 POU3F1_POU_DBD_monomeric_12_2 SELEX - 17527495 17527506 5.0E-06 ATGCATAAGTTA 12 NR3C1_MA0113.1 JASPAR - 17526871 17526888 9.0E-06 GGGAAAAACTTGTACTTT 18 Sox11_HMG_DBD_dimeric_15_1 SELEX - 17528579 17528593 4.0E-06 AACATTTTTACTGTT 15 Sox3_HMG_DBD_dimeric_17_3 SELEX + 17528601 17528617 9.0E-06 CATGAAAGTGATTCAAA 17 FOXO3_forkhead_full_dimeric_14_1 SELEX + 17528583 17528596 5.0E-06 GTAAAAATGTTGTT 14 FOXO3_forkhead_full_dimeric_14_1 SELEX - 17528583 17528596 5.0E-06 AACAACATTTTTAC 14 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX + 17534866 17534879 8.0E-06 CATCCCCACACCCC 14 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX + 17531255 17531269 7.0E-06 GAGGTTAAAAGGTTT 15 Sox3_HMG_DBD_dimeric_17_1 SELEX - 17527373 17527389 9.0E-06 AAATAATGAAAGTATTC 17 Sox3_HMG_DBD_dimeric_17_1 SELEX + 17528578 17528594 6.0E-06 CAACAGTAAAAATGTTG 17 RARG_nuclearreceptor_full_dimeric_16_1 SELEX + 17531255 17531270 2.0E-06 GAGGTTAAAAGGTTTG 16 SNAI2_C2H2_DBD_monomeric_9_1 SELEX - 17527622 17527630 3.0E-06 AACAGGTGT 9 FOXO6_forkhead_DBD_dimeric_14_1 SELEX + 17528583 17528596 3.0E-06 GTAAAAATGTTGTT 14 MSC_bHLH_full_dimeric_10_1 SELEX + 17527621 17527630 1.0E-05 GACACCTGTT 10 TGIF1_MEIS_DBD_dimeric_12_1 SELEX - 17531214 17531225 9.0E-06 TGGCAGCTGTAA 12 TEAD1_MA0090.1 JASPAR + 17527444 17527455 8.0E-06 CACATTCCAGCC 12 SOX9_HMG_full_dimeric_17_1 SELEX - 17528578 17528594 4.0E-06 CAACATTTTTACTGTTG 17 FOXO1_forkhead_DBD_dimeric_14_1 SELEX - 17528583 17528596 2.0E-06 AACAACATTTTTAC 14 V_HSF2_01_M00147 TRANSFAC + 17528437 17528446 2.0E-06 AGAATGTTCT 10 V_HSF2_01_M00147 TRANSFAC - 17528437 17528446 1.0E-05 AGAACATTCT 10 V_ER_Q6_02_M00959 TRANSFAC + 17528418 17528428 1.0E-06 CAGGTCATGGT 11 V_FLI1_Q6_M01208 TRANSFAC - 17533709 17533719 3.0E-06 CAGGAAGTCAG 11 V_FLI1_Q6_M01208 TRANSFAC + 17534726 17534736 0.0E+00 CAGGAAGTGAT 11 V_POU3F3_01_M03090 TRANSFAC - 17527495 17527511 1.0E-06 GATGAATGCATAAGTTA 17 V_EVI1_05_M00082 TRANSFAC - 17526970 17526980 2.0E-06 AGATTAGATAA 11 V_SMAD3_Q6_01_M01888 TRANSFAC + 17526787 17526799 5.0E-06 ATGCAGACAGACT 13 V_ESR1_01_M02261 TRANSFAC - 17528419 17528438 1.0E-05 CTTTTAAGACACCATGACCT 20 V_SOX30_03_M02804 TRANSFAC - 17527377 17527392 6.0E-06 ATGAAATAATGAAAGT 16 V_EVI1_04_M00081 TRANSFAC - 17527025 17527039 8.0E-06 AAAAAGATTAAGAAA 15 V_BCL6_01_M01183 TRANSFAC + 17527366 17527381 2.0E-06 TGTGTAAGAATACTTT 16 V_ETS_B_M00340 TRANSFAC - 17533708 17533721 1.0E-06 AGCAGGAAGTCAGT 14 V_SATB1_Q3_M01723 TRANSFAC - 17527376 17527391 1.0E-06 TGAAATAATGAAAGTA 16 V_FOXJ2_02_M00423 TRANSFAC - 17528585 17528598 2.0E-06 CAAACAACATTTTT 14 V_OCTAMER_01_M01324 TRANSFAC - 17527495 17527511 1.0E-06 GATGAATGCATAAGTTA 17 V_IRF_Q6_01_M00972 TRANSFAC - 17533753 17533763 9.0E-06 GGAAATGAAAC 11 V_IRF2_Q6_M01882 TRANSFAC - 17533750 17533765 4.0E-06 GAGGAAATGAAACCCA 16 V_NFAT3_Q3_M01734 TRANSFAC + 17528528 17528537 4.0E-06 TATTTTTCCT 10 V_NKX25_Q6_M02108 TRANSFAC - 17527255 17527265 2.0E-06 ATCACTTGAAG 11 V_HNF3_Q6_01_M01012 TRANSFAC + 17528588 17528605 9.0E-06 AATGTTGTTTGCTCATGA 18 V_JUNDM2_03_M02772 TRANSFAC - 17534714 17534729 8.0E-06 CCTGTGATGTCATCCC 16 V_PITX2_Q6_M02114 TRANSFAC - 17527292 17527301 1.0E-06 TGTAATCCCA 10 V_NERF_Q2_M00531 TRANSFAC - 17533705 17533722 5.0E-06 CAGCAGGAAGTCAGTGGC 18 V_NERF_Q2_M00531 TRANSFAC + 17534723 17534740 8.0E-06 TCACAGGAAGTGATTCAT 18 V_AREB6_04_M00415 TRANSFAC + 17526954 17526962 8.0E-06 CTGTTTCAT 9 V_PU1_Q4_M01172 TRANSFAC - 17528510 17528528 1.0E-06 AAGATGCATTTCCTCCTTT 19 V_PU1_Q4_M01172 TRANSFAC + 17533751 17533769 1.0E-06 GGGTTTCATTTCCTCATCT 19 V_NR3C1_01_M02219 TRANSFAC - 17526871 17526888 9.0E-06 GGGAAAAACTTGTACTTT 18 V_TCFAP2E_04_M02926 TRANSFAC - 17527035 17527048 2.0E-06 GTCTCAAAAAAAAA 14 V_CDX_Q5_M00991 TRANSFAC + 17526682 17526699 6.0E-06 AACAACCCATTTTGTAAA 18 V_BARBIE_01_M00238 TRANSFAC - 17528242 17528256 1.0E-05 ACATAAAGCTGGGAG 15 V_BCL6_02_M01185 TRANSFAC - 17527013 17527026 2.0E-06 AACTTTCCAAGGCT 14 V_ETS_Q4_M00771 TRANSFAC + 17533708 17533719 8.0E-06 ACTGACTTCCTG 12 V_ETS_Q4_M00771 TRANSFAC - 17534726 17534737 0.0E+00 AATCACTTCCTG 12 RXRA_VDR_MA0074.1 JASPAR + 17531256 17531270 3.0E-06 AGGTTAAAAGGTTTG 15 V_ELF4_04_M02850 TRANSFAC - 17527031 17527047 0.0E+00 TCTCAAAAAAAAAGATT 17 V_ELF4_04_M02850 TRANSFAC - 17527032 17527048 5.0E-06 GTCTCAAAAAAAAAGAT 17 V_HMBOX1_01_M01456 TRANSFAC + 17534756 17534772 3.0E-06 GTGAACTGGTTATTTGG 17 V_POU3F2_01_M00463 TRANSFAC + 17527379 17527392 4.0E-06 TTTCATTATTTCAT 14 V_IPF1_Q4_M00436 TRANSFAC - 17527379 17527390 8.0E-06 GAAATAATGAAA 12 V_PR_01_M00954 TRANSFAC + 17528426 17528452 6.0E-06 GGTGTCTTAAAAGAATGTTCTTTGAGC 27 V_ZFP105_03_M02827 TRANSFAC - 17527032 17527046 2.0E-06 CTCAAAAAAAAAGAT 15 V_ZFP105_03_M02827 TRANSFAC - 17528586 17528600 5.0E-06 AGCAAACAACATTTT 15 V_HSF1_01_M00146 TRANSFAC + 17528437 17528446 1.0E-06 AGAATGTTCT 10 V_HSF1_01_M00146 TRANSFAC - 17528437 17528446 7.0E-06 AGAACATTCT 10 V_HOXA3_07_M02869 TRANSFAC - 17527027 17527040 0.0E+00 AAAAAAGATTAAGA 14 V_HNF1B_04_M02266 TRANSFAC + 17527487 17527498 0.0E+00 CTAATGTTTAAC 12 V_IRF_Q6_M00772 TRANSFAC + 17533749 17533763 2.0E-06 CTGGGTTTCATTTCC 15 V_ISRE_01_M00258 TRANSFAC + 17533751 17533765 2.0E-06 GGGTTTCATTTCCTC 15 V_MEF2_04_M00233 TRANSFAC - 17534760 17534781 8.0E-06 AGTGTTTCTCCAAATAACCAGT 22 V_TEL2_Q6_M00678 TRANSFAC - 17534726 17534735 4.0E-06 TCACTTCCTG 10 V_TEF_01_M01305 TRANSFAC + 17527444 17527455 8.0E-06 CACATTCCAGCC 12 V_TCF7_03_M02817 TRANSFAC + 17528343 17528359 6.0E-06 CCAAGTTCAAAGAGACC 17 V_RREB1_01_M00257 TRANSFAC - 17528379 17528392 4.0E-06 CCACAAACAACACA 14 V_ATF3_Q6_M00513 TRANSFAC - 17528279 17528292 8.0E-06 CTGTGACATCACTG 14 V_ATF3_Q6_M00513 TRANSFAC - 17534715 17534728 2.0E-06 CTGTGATGTCATCC 14 V_CETS1P54_01_M00032 TRANSFAC + 17534725 17534734 9.0E-06 ACAGGAAGTG 10 V_MAFK_Q3_M02022 TRANSFAC - 17531240 17531250 6.0E-06 TGACTCAGCTG 11 V_ISGF3G_03_M02771 TRANSFAC - 17533750 17533764 4.0E-06 AGGAAATGAAACCCA 15 V_FOXO1_Q5_M01216 TRANSFAC - 17527436 17527444 5.0E-06 GAAAACAAA 9 V_ELF1_Q6_M00746 TRANSFAC + 17528510 17528521 3.0E-06 AAAGGAGGAAAT 12 V_ELF1_Q6_M00746 TRANSFAC - 17533758 17533769 3.0E-06 AGATGAGGAAAT 12 V_MYOD_01_M00001 TRANSFAC - 17527620 17527631 8.0E-06 AAACAGGTGTCT 12 V_GABPBETA_Q3_M01876 TRANSFAC + 17534725 17534735 1.0E-06 ACAGGAAGTGA 11 V_EOMES_04_M02851 TRANSFAC + 17534651 17534666 7.0E-06 GAGGAGGTGTTGCCAG 16 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC + 17528490 17528498 8.0E-06 GAGGGTGGG 9 V_FOXL1_02_M02857 TRANSFAC + 17528609 17528624 2.0E-06 TGATTCAAACAACACA 16 V_GATA6_01_M00462 TRANSFAC - 17526973 17526982 9.0E-06 AAAGATTAGA 10 V_PADS_C_M00211 TRANSFAC - 17528354 17528362 4.0E-06 TGTGGTCTC 9 V_PITX2_Q2_M00482 TRANSFAC - 17527291 17527301 1.0E-06 TGTAATCCCAG 11 V_PLZF_02_M01075 TRANSFAC - 17526956 17526984 5.0E-06 CTAAAGATTAGATAAAGATGGAATGAAAC 29 V_ETS1_B_M00339 TRANSFAC - 17533706 17533720 1.0E-06 GCAGGAAGTCAGTGG 15 V_ETS1_B_M00339 TRANSFAC + 17534725 17534739 0.0E+00 ACAGGAAGTGATTCA 15 V_R_01_M00273 TRANSFAC + 17527345 17527365 2.0E-06 TGGGCCCTGGTATGAGGTGTA 21 V_MYF6_03_M02781 TRANSFAC - 17527619 17527634 0.0E+00 GGAAAACAGGTGTCTA 16 V_SRF_06_M02916 TRANSFAC - 17527030 17527046 7.0E-06 CTCAAAAAAAAAGATTA 17 V_SRF_06_M02916 TRANSFAC - 17527031 17527047 1.0E-06 TCTCAAAAAAAAAGATT 17 V_SRF_06_M02916 TRANSFAC - 17527032 17527048 2.0E-06 GTCTCAAAAAAAAAGAT 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 17528469 17528486 1.0E-05 GGAGGCGGGGAAGGAATA 18 V_HNF1A_Q5_M02013 TRANSFAC - 17527489 17527499 5.0E-06 AGTTAAACATT 11 V_FOXO1_04_M01969 TRANSFAC - 17528583 17528602 2.0E-06 TGAGCAAACAACATTTTTAC 20 V_NFE2_01_M00037 TRANSFAC + 17531241 17531251 2.0E-06 AGCTGAGTCAC 11 V_HNF3B_Q6_M02014 TRANSFAC + 17528592 17528600 6.0E-06 TTGTTTGCT 9 V_RFX3_04_M02788 TRANSFAC + 17526672 17526694 9.0E-06 GATCCAGCTTAACAACCCATTTT 23 V_PITX2_01_M01447 TRANSFAC - 17527024 17527040 6.0E-06 AAAAAAGATTAAGAAAC 17 V_PIT1_Q6_M00802 TRANSFAC - 17527360 17527377 1.0E-06 TATTCTTACACATACACC 18 V_PIT1_Q6_M00802 TRANSFAC + 17531156 17531173 5.0E-06 TCTTCTTACACATAACTC 18 V_HOXD3_01_M01338 TRANSFAC - 17527377 17527392 8.0E-06 ATGAAATAATGAAAGT 16 V_OBOX5_01_M01381 TRANSFAC - 17527024 17527040 1.0E-05 AAAAAAGATTAAGAAAC 17 V_STAT1_Q6_M01823 TRANSFAC - 17528532 17528541 6.0E-06 TTCGAGGAAA 10 V_CEBPG_Q6_01_M01869 TRANSFAC - 17533757 17533768 6.0E-06 GATGAGGAAATG 12 V_SMAD_Q6_M00792 TRANSFAC - 17528424 17528432 3.0E-06 AGACACCAT 9 V_EVI1_03_M00080 TRANSFAC - 17526970 17526980 1.0E-06 AGATTAGATAA 11 V_OBOX6_06_M03067 TRANSFAC + 17527024 17527040 1.0E-05 GTTTCTTAATCTTTTTT 17 V_VDRRXR_01_M01202 TRANSFAC + 17531256 17531270 3.0E-06 AGGTTAAAAGGTTTG 15 V_RFX1_02_M00281 TRANSFAC - 17534195 17534212 5.0E-06 GAATAGCCCAGGCAACTT 18 V_OTX3_01_M01403 TRANSFAC - 17527025 17527041 4.0E-06 AAAAAAAGATTAAGAAA 17 V_ER_Q6_M00191 TRANSFAC - 17528417 17528435 2.0E-06 TTAAGACACCATGACCTGC 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.