Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TRPM5 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 29850 transient receptor potential cation channel, subfamily M, member 5 chr11 - 2443775 - 2449275 2444275 Transcription Factor Binding Sites   Download all TFBS in the TRPM5 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU2F1_POU_DBD_dimeric_14_1 SELEX + 2440965 2440978 7.0E-06 TATGAATATTATTT 14 POU2F1_POU_DBD_dimeric_14_1 SELEX - 2440965 2440978 2.0E-06 AAATAATATTCATA 14 SOX21_HMG_DBD_dimeric_13_2 SELEX + 2440967 2440979 9.0E-06 TGAATATTATTTA 13 SOX21_HMG_DBD_dimeric_13_2 SELEX - 2440967 2440979 2.0E-06 TAAATAATATTCA 13 FOXF2_MA0030.1 JASPAR - 2440959 2440972 2.0E-06 TATTCATAAACAAA 14 SRY_HMG_DBD_dimeric_13_2 SELEX + 2440967 2440979 1.0E-06 TGAATATTATTTA 13 SRY_HMG_DBD_dimeric_13_2 SELEX - 2440967 2440979 2.0E-06 TAAATAATATTCA 13 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 2440972 2440983 4.0E-06 TGTGTAAATAAT 12 FOXL1_forkhead_full_dimeric_13_1 SELEX - 2440960 2440972 8.0E-06 TATTCATAAACAA 13 POU5F1P1_POU_DBD_monomeric_9_1 SELEX - 2446275 2446283 6.0E-06 TATTCAAAT 9 FOXC1_forkhead_DBD_monomeric_11_1 SELEX - 2440973 2440983 3.0E-06 TGTGTAAATAA 11 POU2F3_POU_DBD_monomeric_9_1 SELEX - 2446275 2446283 6.0E-06 TATTCAAAT 9 SOX7_HMG_full_dimeric_17_2 SELEX + 2440965 2440981 6.0E-06 TATGAATATTATTTACA 17 SOX7_HMG_full_dimeric_17_2 SELEX - 2440965 2440981 1.0E-06 TGTAAATAATATTCATA 17 SOX15_HMG_full_dimeric_15_3 SELEX + 2440966 2440980 2.0E-06 ATGAATATTATTTAC 15 SOX15_HMG_full_dimeric_15_3 SELEX - 2440966 2440980 4.0E-06 GTAAATAATATTCAT 15 Pou2f2_POU_DBD_monomeric_9_1 SELEX - 2446275 2446283 4.0E-06 TATTCAAAT 9 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 2440968 2440981 3.0E-06 GAATATTATTTACA 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 2440965 2440978 8.0E-06 AAATAATATTCATA 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 2440968 2440981 4.0E-06 GAATATTATTTACA 14 Sox17_HMG_DBD_dimeric_15_2 SELEX + 2440966 2440980 1.0E-06 ATGAATATTATTTAC 15 Sox17_HMG_DBD_dimeric_15_2 SELEX - 2440966 2440980 0.0E+00 GTAAATAATATTCAT 15 ESR1_MA0112.2 JASPAR + 2441041 2441060 9.0E-06 TTCTCGGGTGACGCTGCCCT 20 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 2440965 2440978 4.0E-06 AAATAATATTCATA 14 POU2F3_POU_DBD_dimeric_12_1 SELEX - 2440966 2440977 8.0E-06 AATAATATTCAT 12 SOX14_HMG_DBD_dimeric_15_1 SELEX + 2440966 2440980 3.0E-06 ATGAATATTATTTAC 15 POU1F1_POU_DBD_monomeric_17_1 SELEX + 2440963 2440979 6.0E-06 TTTATGAATATTATTTA 17 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 2440966 2440977 8.0E-06 AATAATATTCAT 12 SOX18_HMG_full_dimeric_15_3 SELEX - 2440966 2440980 4.0E-06 GTAAATAATATTCAT 15 Sox3_HMG_DBD_dimeric_17_3 SELEX - 2440965 2440981 6.0E-06 TGTAAATAATATTCATA 17 FOXB1_forkhead_full_monomeric_9_1 SELEX - 2440973 2440981 4.0E-06 TGTAAATAA 9 REST_MA0138.2 JASPAR + 2441867 2441887 3.0E-06 GACAGAACCATGGAGACAGCC 21 POU3F3_POU_DBD_dimeric_12_1 SELEX + 2440966 2440977 6.0E-06 ATGAATATTATT 12 POU3F3_POU_DBD_dimeric_12_1 SELEX - 2440966 2440977 4.0E-06 AATAATATTCAT 12 FOXB1_forkhead_DBD_monomeric_11_1 SELEX - 2440973 2440983 2.0E-06 TGTGTAAATAA 11 Sox1_HMG_DBD_dimeric_15_2 SELEX + 2440966 2440980 4.0E-06 ATGAATATTATTTAC 15 Sox1_HMG_DBD_dimeric_15_2 SELEX - 2440966 2440980 3.0E-06 GTAAATAATATTCAT 15 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 2440967 2440980 5.0E-06 GTAAATAATATTCA 14 V_FREAC7_01_M00293 TRANSFAC - 2440957 2440972 2.0E-06 TATTCATAAACAAAGC 16 V_POU3F3_01_M03090 TRANSFAC - 2440960 2440976 3.0E-06 ATAATATTCATAAACAA 17 V_POU3F3_01_M03090 TRANSFAC + 2440961 2440977 3.0E-06 TGTTTATGAATATTATT 17 V_XFD1_01_M00267 TRANSFAC - 2440957 2440970 5.0E-06 TTCATAAACAAAGC 14 V_XFD1_01_M00267 TRANSFAC - 2440970 2440983 0.0E+00 TGTGTAAATAATAT 14 V_FOXA2_04_M02749 TRANSFAC - 2440969 2440985 2.0E-06 AGTGTGTAAATAATATT 17 V_NRSF_Q4_M01028 TRANSFAC - 2441868 2441886 6.0E-06 GCTGTCTCCATGGTTCTGT 19 V_ESR1_01_M02261 TRANSFAC + 2441041 2441060 9.0E-06 TTCTCGGGTGACGCTGCCCT 20 V_OCTAMER_01_M01324 TRANSFAC - 2440960 2440976 3.0E-06 ATAATATTCATAAACAA 17 V_OCTAMER_01_M01324 TRANSFAC + 2440961 2440977 3.0E-06 TGTTTATGAATATTATT 17 V_POU1F1_Q6_M00744 TRANSFAC + 2440966 2440975 5.0E-06 ATGAATATTA 10 V_FOXO3A_Q1_M01137 TRANSFAC - 2440970 2440981 3.0E-06 TGTAAATAATAT 12 V_FOXJ1_03_M02750 TRANSFAC - 2440955 2440970 3.0E-06 TTCATAAACAAAGCAT 16 V_SOX21_03_M02803 TRANSFAC + 2440965 2440980 7.0E-06 TATGAATATTATTTAC 16 V_TCFAP2C_04_M02925 TRANSFAC - 2441054 2441067 6.0E-06 CCGCCAGAGGGCAG 14 V_OCT1_02_M00136 TRANSFAC - 2440963 2440977 0.0E+00 AATAATATTCATAAA 15 V_CART1_01_M00416 TRANSFAC + 2440961 2440978 3.0E-06 TGTTTATGAATATTATTT 18 V_ARID5A_03_M02736 TRANSFAC - 2440963 2440976 7.0E-06 ATAATATTCATAAA 14 V_SOX8_04_M02912 TRANSFAC - 2440960 2440973 7.0E-06 ATATTCATAAACAA 14 V_XFD3_01_M00269 TRANSFAC - 2440970 2440983 0.0E+00 TGTGTAAATAATAT 14 V_HNF1_Q6_01_M01011 TRANSFAC - 2440958 2440978 6.0E-06 AAATAATATTCATAAACAAAG 21 V_REST_01_M01256 TRANSFAC - 2441870 2441891 2.0E-06 CCTGGGCTGTCTCCATGGTTCT 22 V_OCT1_04_M00138 TRANSFAC - 2440957 2440979 5.0E-06 TAAATAATATTCATAAACAAAGC 23 V_OCT1_04_M00138 TRANSFAC + 2440958 2440980 8.0E-06 CTTTGTTTATGAATATTATTTAC 23 V_CTCF_02_M01259 TRANSFAC - 2441054 2441073 2.0E-06 ATGCTGCCGCCAGAGGGCAG 20 V_CTCF_02_M01259 TRANSFAC - 2442108 2442127 6.0E-06 ACACGGCCGGCAGGTGGCAG 20 V_CTCF_01_M01200 TRANSFAC - 2441052 2441071 0.0E+00 GCTGCCGCCAGAGGGCAGCG 20 V_CTCF_01_M01200 TRANSFAC - 2442106 2442125 0.0E+00 ACGGCCGGCAGGTGGCAGTA 20 V_SOX17_04_M02904 TRANSFAC - 2440961 2440977 3.0E-06 AATAATATTCATAAACA 17 V_FREAC2_01_M00290 TRANSFAC - 2440957 2440972 6.0E-06 TATTCATAAACAAAGC 16 V_HFH8_01_M00294 TRANSFAC + 2440958 2440970 4.0E-06 CTTTGTTTATGAA 13 V_ZFP105_04_M02931 TRANSFAC - 2440968 2440984 4.0E-06 GTGTGTAAATAATATTC 17 V_HIF1_Q3_M00797 TRANSFAC + 2442338 2442351 9.0E-06 GTGGACGTGCTGGC 14 V_FOXL1_04_M02753 TRANSFAC - 2440956 2440972 2.0E-06 TATTCATAAACAAAGCA 17 V_FOXL1_04_M02753 TRANSFAC - 2440969 2440985 7.0E-06 AGTGTGTAAATAATATT 17 V_REST_02_M02256 TRANSFAC + 2441867 2441887 3.0E-06 GACAGAACCATGGAGACAGCC 21 V_PIT1_Q6_M00802 TRANSFAC - 2440955 2440972 2.0E-06 TATTCATAAACAAAGCAT 18 V_GLIS2_04_M02863 TRANSFAC - 2440961 2440974 2.0E-06 AATATTCATAAACA 14 V_FOXK1_03_M02752 TRANSFAC - 2440956 2440972 4.0E-06 TATTCATAAACAAAGCA 17 V_FOXK1_03_M02752 TRANSFAC - 2440969 2440985 8.0E-06 AGTGTGTAAATAATATT 17 V_NANOG_02_M01247 TRANSFAC - 2440952 2440971 6.0E-06 ATTCATAAACAAAGCATATA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.