Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ABT1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 29777 activator of basal transcription 1 chr6 + 26592170 - 26597670 26597170 Transcription Factor Binding Sites   Download all TFBS in the ABT1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX - 26596746 26596756 3.0E-06 AATGACTCACC 11 CTCF_MA0139.1 JASPAR - 26596168 26596186 0.0E+00 CGACCAGCAGGGGGCGCCG 19 HINFP1_C2H2_full_dimeric_19_1 SELEX - 26597381 26597399 1.0E-06 GCGGACGTGCAGGGGCCGG 19 SOX10_HMG_full_dimeric_16_1 SELEX - 26595302 26595317 9.0E-06 AGCAATTTTCAGGGTG 16 POU2F1_POU_DBD_dimeric_14_1 SELEX + 26596455 26596468 7.0E-06 CATAAGTATGCATA 14 SOX9_HMG_full_dimeric_16_1 SELEX - 26595302 26595317 7.0E-06 AGCAATTTTCAGGGTG 16 SRY_HMG_DBD_dimeric_13_2 SELEX - 26596721 26596733 6.0E-06 TAAATTTCATTTA 13 POU3F2_POU_DBD_monomeric_13_1 SELEX - 26596456 26596468 9.0E-06 TATGCATACTTAT 13 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 26595788 26595805 9.0E-06 TTCATTAACTTTATTGAA 18 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 26595790 26595804 2.0E-06 CAATAAAGTTAATGA 15 LHX2_homeodomain_DBD_dimeric_15_1 SELEX - 26595790 26595804 6.0E-06 TCATTAACTTTATTG 15 SOX9_HMG_full_dimeric_17_3 SELEX - 26596719 26596735 7.0E-06 TATAAATTTCATTTAAA 17 SOX8_HMG_full_dimeric_17_1 SELEX - 26595787 26595803 5.0E-06 CATTAACTTTATTGAAG 17 SOX8_HMG_full_dimeric_17_1 SELEX - 26596719 26596735 9.0E-06 TATAAATTTCATTTAAA 17 SOX7_HMG_full_dimeric_17_2 SELEX - 26596719 26596735 1.0E-06 TATAAATTTCATTTAAA 17 MAFF_bZIP_DBD_dimeric_15_1 SELEX + 26595256 26595270 4.0E-06 TTGCTTATTCAGGAA 15 MAFF_bZIP_DBD_dimeric_15_1 SELEX - 26595256 26595270 5.0E-06 TTCCTGAATAAGCAA 15 OTX2_homeodomain_DBD_dimeric_15_1 SELEX - 26596069 26596083 4.0E-06 AGTAATCCGGTTAGC 15 TEAD1_TEA_full_monomeric_10_1 SELEX - 26595382 26595391 7.0E-06 CACATTCCTC 10 Sox17_HMG_DBD_dimeric_15_2 SELEX + 26596720 26596734 8.0E-06 TTAAATGAAATTTAT 15 Sox17_HMG_DBD_dimeric_15_2 SELEX - 26596720 26596734 0.0E+00 ATAAATTTCATTTAA 15 HOXA5_MA0158.1 JASPAR - 26593058 26593065 7.0E-06 CACTAATT 8 SOX2_HMG_full_dimeric_15_1 SELEX - 26596720 26596734 7.0E-06 ATAAATTTCATTTAA 15 POU2F3_POU_DBD_dimeric_12_1 SELEX - 26595256 26595267 5.0E-06 CTGAATAAGCAA 12 SOX14_HMG_DBD_dimeric_13_1 SELEX - 26596721 26596733 8.0E-06 TAAATTTCATTTA 13 Otx1_homeodomain_DBD_dimeric_15_1 SELEX - 26596069 26596083 4.0E-06 AGTAATCCGGTTAGC 15 SP4_C2H2_full_monomeric_17_1 SELEX + 26597119 26597135 3.0E-06 TTGGACCCGCCCCCTCG 17 MAFK_bZIP_full_dimeric_15_1 SELEX + 26595256 26595270 6.0E-06 TTGCTTATTCAGGAA 15 CTCF_C2H2_full_monomeric_17_1 SELEX + 26596169 26596185 1.0E-06 GGCGCCCCCTGCTGGTC 17 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 26595253 26595273 2.0E-06 AGCTTGCTTATTCAGGAATTT 21 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 26595253 26595273 3.0E-06 AAATTCCTGAATAAGCAAGCT 21 PRDM4_C2H2_full_monomeric_13_1 SELEX - 26596777 26596789 9.0E-06 ATTCAAGGGCCCC 13 POU1F1_POU_DBD_monomeric_17_1 SELEX - 26596454 26596470 6.0E-06 CATATGCATACTTATGT 17 CUX2_CUT_DBD_dimeric_18_1 SELEX + 26595788 26595805 9.0E-06 TTCAATAAAGTTAATGAA 18 CUX2_CUT_DBD_dimeric_18_1 SELEX - 26595788 26595805 8.0E-06 TTCATTAACTTTATTGAA 18 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 26595789 26595805 7.0E-06 TCAATAAAGTTAATGAA 17 MAFG_bZIP_full_dimeric_21_1 SELEX + 26595253 26595273 4.0E-06 AGCTTGCTTATTCAGGAATTT 21 MAFG_bZIP_full_dimeric_21_1 SELEX - 26595253 26595273 6.0E-06 AAATTCCTGAATAAGCAAGCT 21 JDP2_bZIP_full_dimeric_9_1 SELEX - 26596747 26596755 7.0E-06 ATGACTCAC 9 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 26595256 26595267 9.0E-06 CTGAATAAGCAA 12 Pou5f1_MA0142.1 JASPAR + 26596833 26596847 9.0E-06 AATTGTTCTGCAAAA 15 FOXI1_forkhead_full_dimeric_17_1 SELEX + 26596027 26596043 0.0E+00 ATGTTGATAGTCATCAA 17 SOX18_HMG_full_dimeric_15_3 SELEX - 26596720 26596734 1.0E-06 ATAAATTTCATTTAA 15 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX - 26595387 26595397 7.0E-06 GTTCCCCACAT 11 Sox3_HMG_DBD_dimeric_17_3 SELEX - 26596719 26596735 4.0E-06 TATAAATTTCATTTAAA 17 TEAD4_TEA_DBD_monomeric_10_1 SELEX - 26595382 26595391 9.0E-06 CACATTCCTC 10 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX - 26595386 26595397 8.0E-06 GTTCCCCACATT 12 Sox2_MA0143.1 JASPAR + 26596832 26596846 9.0E-06 AAATTGTTCTGCAAA 15 Sox1_HMG_DBD_dimeric_15_2 SELEX - 26596720 26596734 4.0E-06 ATAAATTTCATTTAA 15 TEAD1_MA0090.1 JASPAR - 26595380 26595391 2.0E-06 CACATTCCTCAT 12 V_DMRT4_01_M01149 TRANSFAC - 26596446 26596458 7.0E-06 TATGTTGCAAATA 13 V_CEBPG_Q6_M00622 TRANSFAC - 26596716 26596728 0.0E+00 TTCATTTAAAAAT 13 V_DBX1_01_M01483 TRANSFAC - 26596714 26596730 8.0E-06 ATTTCATTTAAAAATTT 17 V_GAF_Q6_M01209 TRANSFAC - 26596966 26596976 9.0E-06 CAGATTCCCGG 11 V_APOLYA_B_M00310 TRANSFAC + 26596787 26596801 1.0E-06 AATAAAATGCTATTT 15 V_POU3F3_01_M03090 TRANSFAC - 26596456 26596472 4.0E-06 TCCATATGCATACTTAT 17 V_POU3F3_01_M03090 TRANSFAC + 26596457 26596473 0.0E+00 TAAGTATGCATATGGAT 17 V_AR_02_M00953 TRANSFAC - 26596804 26596830 4.0E-06 AGAGAAGTTTCTATGTGTTCTAGCGAT 27 V_MAFK_03_M02776 TRANSFAC + 26595308 26595322 4.0E-06 GAAAATTGCTAACAA 15 V_STAT3STAT3_Q3_M01220 TRANSFAC - 26596089 26596102 4.0E-06 GTGCTGGGAACCGC 14 V_BCL6_01_M01183 TRANSFAC - 26596714 26596729 2.0E-06 TTTCATTTAAAAATTT 16 V_BCL6_01_M01183 TRANSFAC + 26596717 26596732 7.0E-06 TTTTTAAATGAAATTT 16 V_MAFB_05_M02775 TRANSFAC + 26595309 26595325 4.0E-06 AAAATTGCTAACAAGGG 17 V_POU5F1_02_M02245 TRANSFAC + 26596833 26596847 9.0E-06 AATTGTTCTGCAAAA 15 V_SATB1_Q3_M01723 TRANSFAC + 26595222 26595237 9.0E-06 TGAAATAAGGAAACTT 16 V_GABP_B_M00341 TRANSFAC - 26597374 26597385 5.0E-06 GCCGGAAGCGCG 12 V_OCTAMER_01_M01324 TRANSFAC - 26596456 26596472 4.0E-06 TCCATATGCATACTTAT 17 V_OCTAMER_01_M01324 TRANSFAC + 26596457 26596473 0.0E+00 TAAGTATGCATATGGAT 17 V_IRF_Q6_01_M00972 TRANSFAC + 26596141 26596151 6.0E-06 AGAACTGAAAC 11 V_ZFP740_03_M02834 TRANSFAC - 26597562 26597577 6.0E-06 TCCCCACCCCCAAAAT 16 V_IRF2_Q6_M01882 TRANSFAC - 26597095 26597110 7.0E-06 TGACAAATGAAAGGAA 16 V_NFAT3_Q3_M01734 TRANSFAC - 26595290 26595299 3.0E-06 TTATTTTCCT 10 V_AP4_Q6_M00176 TRANSFAC + 26595112 26595121 2.0E-06 CTCAGCTGGT 10 V_AP4_Q6_M00176 TRANSFAC + 26596758 26596767 5.0E-06 CTCAGCTGGA 10 V_POU3F2_02_M00464 TRANSFAC + 26596025 26596034 9.0E-06 TTATGTTGAT 10 V_SOX11_04_M02899 TRANSFAC + 26596831 26596844 1.0E-06 AAAATTGTTCTGCA 14 V_IRF3_05_M02767 TRANSFAC + 26595224 26595237 6.0E-06 AAATAAGGAAACTT 14 V_MAF_Q6_M00648 TRANSFAC - 26597035 26597050 0.0E+00 AGGGAGGAAGTGGTGT 16 V_SP1_02_M01303 TRANSFAC + 26597568 26597578 5.0E-06 GGGGTGGGGAG 11 V_AIRE_02_M01000 TRANSFAC + 26595140 26595164 3.0E-06 GGTTTGAATGTGGTCATCCTTAGGT 25 V_HBP1_Q2_M01661 TRANSFAC + 26595788 26595796 4.0E-06 TTCAATAAA 9 V_AR_03_M00956 TRANSFAC - 26595396 26595422 6.0E-06 AGCCTTGGGGCAGCGTGTTCTTCCCGT 27 V_AR_03_M00956 TRANSFAC - 26596804 26596830 6.0E-06 AGAGAAGTTTCTATGTGTTCTAGCGAT 27 V_NRSE_B_M00325 TRANSFAC - 26597527 26597547 8.0E-06 CTCAGCCTCGCGCAGCGAAGC 21 V_RPC155_01_M01798 TRANSFAC + 26595164 26595179 2.0E-06 TCGCTGGTTCGAATCC 16 V_ETS_Q4_M00771 TRANSFAC + 26597036 26597047 7.0E-06 CACCACTTCCTC 12 V_PITX1_Q6_M01826 TRANSFAC + 26595292 26595302 3.0E-06 GAAAATAATCC 11 V_ELF4_04_M02850 TRANSFAC - 26596713 26596729 5.0E-06 TTTCATTTAAAAATTTT 17 V_BACH1_01_M00495 TRANSFAC + 26596744 26596758 2.0E-06 AAGGTGAGTCATTCC 15 V_SOX13_03_M02797 TRANSFAC - 26596829 26596844 5.0E-06 TGCAGAACAATTTTAG 16 V_IPF1_Q4_M00436 TRANSFAC + 26595795 26595806 6.0E-06 AAGTTAATGAAA 12 V_PR_01_M00954 TRANSFAC - 26595396 26595422 7.0E-06 AGCCTTGGGGCAGCGTGTTCTTCCCGT 27 V_E2F1_01_M01250 TRANSFAC - 26597328 26597335 1.0E-05 CGTTTCTT 8 V_SP4_03_M02810 TRANSFAC + 26597121 26597137 0.0E+00 GGACCCGCCCCCTCGTC 17 V_RSRFC4_Q2_M00407 TRANSFAC - 26595190 26595206 9.0E-06 CTTTTAAAAATGGAACT 17 V_AMEF2_Q6_M00403 TRANSFAC - 26596721 26596738 6.0E-06 GTTTATAAATTTCATTTA 18 V_RXRA_04_M02895 TRANSFAC + 26596902 26596917 7.0E-06 TAGGGTAGGTTATATT 16 V_MAZ_Q6_01_M02023 TRANSFAC + 26597567 26597580 2.0E-06 GGGGGTGGGGAGTG 14 V_HNF1_Q6_01_M01011 TRANSFAC + 26596722 26596742 1.0E-06 AAATGAAATTTATAAACTTTA 21 V_EGR1_04_M02848 TRANSFAC + 26595339 26595354 1.0E-06 AGTTGAGTGGGACTCG 16 V_SOX18_03_M02801 TRANSFAC + 26596830 26596845 4.0E-06 TAAAATTGTTCTGCAA 16 V_TATA_C_M00216 TRANSFAC + 26596737 26596746 5.0E-06 ACTTTAAAAG 10 V_ISRE_01_M00258 TRANSFAC + 26596987 26597001 5.0E-06 AAGTTTCCCATCCCG 15 V_GADP_01_M01258 TRANSFAC + 26597376 26597387 8.0E-06 CGCTTCCGGCCC 12 V_JUNDM2_04_M02876 TRANSFAC - 26596744 26596759 2.0E-06 AGGAATGACTCACCTT 16 V_OCT1_04_M00138 TRANSFAC + 26596454 26596476 0.0E+00 ACATAAGTATGCATATGGATAAT 23 V_OCT1_04_M00138 TRANSFAC - 26596711 26596733 1.0E-06 TAAATTTCATTTAAAAATTTTGA 23 V_GR_01_M00955 TRANSFAC - 26596804 26596830 6.0E-06 AGAGAAGTTTCTATGTGTTCTAGCGAT 27 V_AP4_Q5_M00175 TRANSFAC + 26595112 26595121 1.0E-06 CTCAGCTGGT 10 V_GR_Q6_M00192 TRANSFAC - 26596808 26596826 0.0E+00 AAGTTTCTATGTGTTCTAG 19 V_TEF_01_M01305 TRANSFAC - 26595380 26595391 2.0E-06 CACATTCCTCAT 12 V_HOXA5_03_M02271 TRANSFAC - 26593058 26593065 7.0E-06 CACTAATT 8 V_HFH1_01_M00129 TRANSFAC - 26596731 26596742 7.0E-06 TAAAGTTTATAA 12 V_MEF2_Q6_01_M00941 TRANSFAC + 26596909 26596920 6.0E-06 GGTTATATTTGG 12 V_NCX_02_M01420 TRANSFAC - 26596714 26596730 4.0E-06 ATTTCATTTAAAAATTT 17 V_ARID3A_04_M02735 TRANSFAC + 26596716 26596732 6.0E-06 ATTTTTAAATGAAATTT 17 V_TBP_06_M02814 TRANSFAC - 26596713 26596728 5.0E-06 TTCATTTAAAAATTTT 16 V_CTCF_02_M01259 TRANSFAC - 26596170 26596189 1.0E-06 GCGCGACCAGCAGGGGGCGC 20 V_OCT4_02_M01124 TRANSFAC + 26596834 26596848 6.0E-06 ATTGTTCTGCAAAAT 15 V_CTCF_01_M01200 TRANSFAC - 26596168 26596187 0.0E+00 GCGACCAGCAGGGGGCGCCG 20 V_TFIII_Q6_M00706 TRANSFAC - 26597044 26597052 6.0E-06 AGAGGGAGG 9 V_ZFP105_04_M02931 TRANSFAC - 26593055 26593071 5.0E-06 AAGCTTCACTAATTTTC 17 V_ZFP105_04_M02931 TRANSFAC + 26595784 26595800 2.0E-06 TCTCTTCAATAAAGTTA 17 V_ZFP105_04_M02931 TRANSFAC - 26595793 26595809 3.0E-06 CTGTTTCATTAACTTTA 17 V_AP1_Q4_01_M00926 TRANSFAC + 26596748 26596755 1.0E-05 TGAGTCAT 8 V_MTF1_06_M02882 TRANSFAC + 26595879 26595892 9.0E-06 ACTTTAGAAATATA 14 V_TBP_01_M00471 TRANSFAC - 26596728 26596735 8.0E-06 TATAAATT 8 V_HIF1_Q3_M00797 TRANSFAC - 26597386 26597399 8.0E-06 GCGGACGTGCAGGG 14 V_CEBPA_01_M00116 TRANSFAC + 26597080 26597093 7.0E-06 GTATTGCCCAATCA 14 V_GATA1_04_M00128 TRANSFAC + 26596350 26596362 9.0E-06 ATCTGATAGGGAA 13 V_T3R_Q6_M00963 TRANSFAC + 26596101 26596109 3.0E-06 ACTGTCCTT 9 V_NCX_01_M00484 TRANSFAC - 26595573 26595582 8.0E-06 CGGTAAGTTG 10 V_E2F6_01_M01252 TRANSFAC - 26597328 26597335 1.0E-05 CGTTTCTT 8 V_TEF1_Q6_03_M01817 TRANSFAC + 26595382 26595390 3.0E-06 GAGGAATGT 9 V_PXR_Q2_M00964 TRANSFAC + 26595794 26595805 4.0E-06 AAAGTTAATGAA 12 V_BDP1_01_M01796 TRANSFAC - 26595168 26595179 1.0E-06 GGATTCGAACCA 12 V_FRA1_Q5_M01267 TRANSFAC + 26596748 26596755 1.0E-05 TGAGTCAT 8 V_MYB_Q3_M00773 TRANSFAC + 26595333 26595343 9.0E-06 ACAGACAGTTG 11 V_PLZF_02_M01075 TRANSFAC - 26596726 26596754 5.0E-06 TGACTCACCTTTTAAAGTTTATAAATTTC 29 V_T3RBETA_Q6_01_M02119 TRANSFAC + 26596357 26596373 0.0E+00 AGGGAATCTGAGGACAG 17 V_ETS1_B_M00339 TRANSFAC - 26597034 26597048 1.0E-05 GGAGGAAGTGGTGTG 15 V_ETS1_B_M00339 TRANSFAC - 26597087 26597101 4.0E-06 AAAGGAAATGATTGG 15 V_ZFP281_01_M01597 TRANSFAC + 26597566 26597576 1.0E-06 TGGGGGTGGGG 11 V_BBX_03_M02739 TRANSFAC - 26595785 26595799 8.0E-06 AACTTTATTGAAGAG 15 V_BBX_03_M02739 TRANSFAC + 26596717 26596731 2.0E-06 TTTTTAAATGAAATT 15 V_BBX_03_M02739 TRANSFAC - 26596717 26596731 2.0E-06 AATTTCATTTAAAAA 15 V_OCT1_06_M00162 TRANSFAC - 26596721 26596734 5.0E-06 ATAAATTTCATTTA 14 V_HSF_Q6_M00641 TRANSFAC - 26595231 26595243 6.0E-06 TTCTCCAAGTTTC 13 V_HSF_Q6_M00641 TRANSFAC - 26596820 26596832 4.0E-06 TTAGAGAAGTTTC 13 V_SOX2_01_M02246 TRANSFAC + 26596832 26596846 9.0E-06 AAATTGTTCTGCAAA 15 V_NFE2_Q6_M02104 TRANSFAC - 26596741 26596756 9.0E-06 AATGACTCACCTTTTA 16 V_SOX18_04_M02905 TRANSFAC + 26596722 26596737 9.0E-06 AAATGAAATTTATAAA 16 V_YY1_01_M00059 TRANSFAC + 26595189 26595205 2.0E-06 GAGTTCCATTTTTAAAA 17 V_PR_02_M00957 TRANSFAC - 26596804 26596830 3.0E-06 AGAGAAGTTTCTATGTGTTCTAGCGAT 27 V_SOX12_03_M02796 TRANSFAC + 26596832 26596845 1.0E-05 AAATTGTTCTGCAA 14 V_PIT1_Q6_M00802 TRANSFAC - 26595026 26595043 6.0E-06 TATTCTTGTTCATTTTGA 18 V_SOX15_04_M02903 TRANSFAC + 26596720 26596734 1.0E-06 TTAAATGAAATTTAT 15 V_SOX15_04_M02903 TRANSFAC - 26596720 26596734 6.0E-06 ATAAATTTCATTTAA 15 V_SRY_05_M02917 TRANSFAC - 26596829 26596845 7.0E-06 TTGCAGAACAATTTTAG 17 V_UF1H3BETA_Q6_M01068 TRANSFAC + 26597564 26597577 1.0E-06 TTTGGGGGTGGGGA 14 V_CEBP_Q2_01_M00912 TRANSFAC + 26597082 26597093 6.0E-06 ATTGCCCAATCA 12 V_LPOLYA_B_M00318 TRANSFAC + 26595790 26595797 7.0E-06 CAATAAAG 8 V_SOX5_07_M02909 TRANSFAC + 26596828 26596844 3.0E-06 TCTAAAATTGTTCTGCA 17 V_ZFP128_04_M02932 TRANSFAC - 26595881 26595894 7.0E-06 AGTATATTTCTAAA 14 V_P300_01_M00033 TRANSFAC - 26595939 26595952 4.0E-06 GCAGGGAGTAAATG 14 V_BRF1_01_M01747 TRANSFAC + 26595168 26595180 1.0E-06 TGGTTCGAATCCG 13 V_GLIS2_04_M02863 TRANSFAC - 26595879 26595892 6.0E-06 TATATTTCTAAAGT 14 V_PAX4_04_M00380 TRANSFAC + 26596843 26596872 7.0E-06 CAAAATTCCCTAAAAAGCCGGCATCAACCC 30 V_CEBPA_Q6_M01866 TRANSFAC - 26596447 26596459 9.0E-06 TTATGTTGCAAAT 13 V_CEBPA_Q6_M01866 TRANSFAC - 26597081 26597093 6.0E-06 TGATTGGGCAATA 13 V_HSF1_Q6_01_M02017 TRANSFAC - 26596059 26596072 7.0E-06 TAGCTTTCTGGAAG 14 V_OTX3_01_M01403 TRANSFAC + 26596070 26596086 9.0E-06 CTAACCGGATTACTTGT 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.