Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

GRP Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 2922 chr18 + 56882399 - 56892399 0 Transcription Factor Binding Sites   Download all TFBS in the GRP promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints MYBL2_MYB_DBD_dimeric_14_1 SELEX + 56890019 56890032 6.0E-06 AAAGGTTAACAGCT 14 MYBL2_MYB_DBD_dimeric_14_1 SELEX - 56890019 56890032 6.0E-06 AGCTGTTAACCTTT 14 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX - 56889896 56889905 6.0E-06 ATAATTAAAA 10 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX - 56889896 56889905 3.0E-06 ATAATTAAAA 10 ALX3_homeodomain_full_monomeric_10_1 SELEX + 56889897 56889906 2.0E-06 TTTAATTATA 10 ALX3_homeodomain_full_monomeric_10_1 SELEX - 56889897 56889906 6.0E-06 TATAATTAAA 10 Arx_homeodomain_DBD_dimeric_13_1 SELEX + 56889898 56889910 9.0E-06 TTAATTATATAAA 13 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 56889889 56889905 4.0E-06 ATAATTAAAACTAAACT 17 Dlx1_homeodomain_DBD_monomeric_8_1 SELEX - 56889898 56889905 4.0E-06 ATAATTAA 8 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 56890504 56890517 2.0E-06 TGATACGCCCACTT 14 Alx1_homeodomain_DBD_monomeric_10_1 SELEX + 56889897 56889906 4.0E-06 TTTAATTATA 10 Alx1_homeodomain_DBD_monomeric_10_1 SELEX - 56889897 56889906 6.0E-06 TATAATTAAA 10 ISX_homeodomain_DBD_dimeric_13_1 SELEX - 56889898 56889910 4.0E-06 TTTATATAATTAA 13 KLF13_C2H2_full_monomeric_18_1 SELEX - 56890501 56890518 5.0E-06 ATGATACGCCCACTTCCA 18 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 56889754 56889767 9.0E-06 AGAAAACGTTTGCT 14 Spz1_MA0111.1 JASPAR + 56890021 56890031 7.0E-06 AGGTTAACAGC 11 HOXB5_homeodomain_DBD_monomeric_10_1 SELEX - 56889897 56889906 5.0E-06 TATAATTAAA 10 LEF1_HMG_DBD_monomeric_15_1 SELEX - 56890304 56890318 2.0E-06 ATAGATGAAAGTGTT 15 RFX2_RFX_DBD_dimeric_15_1 SELEX - 56890621 56890635 2.0E-06 GGTTGCTAAGGAGAG 15 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 56889754 56889767 7.0E-06 AGAAAACGTTTGCT 14 HOXB2_homeodomain_DBD_monomeric_10_1 SELEX - 56889897 56889906 5.0E-06 TATAATTAAA 10 Alx4_homeodomain_DBD_dimeric_13_1 SELEX + 56889898 56889910 8.0E-06 TTAATTATATAAA 13 DLX6_homeodomain_DBD_monomeric_8_1 SELEX - 56889898 56889905 9.0E-06 ATAATTAA 8 VAX1_homeodomain_DBD_monomeric_8_1 SELEX + 56889898 56889905 9.0E-06 TTAATTAT 8 MIXL1_homeodomain_full_monomeric_10_1 SELEX + 56889897 56889906 1.0E-05 TTTAATTATA 10 MIXL1_homeodomain_full_monomeric_10_1 SELEX - 56889897 56889906 6.0E-06 TATAATTAAA 10 DLX3_homeodomain_DBD_monomeric_8_1 SELEX - 56889898 56889905 9.0E-06 ATAATTAA 8 GSX2_homeodomain_DBD_monomeric_10_1 SELEX - 56889897 56889906 5.0E-06 TATAATTAAA 10 CART1_homeodomain_DBD_dimeric_13_1 SELEX - 56889898 56889910 3.0E-06 TTTATATAATTAA 13 Uncx_homeodomain_DBD_dimeric_13_1 SELEX - 56889898 56889910 4.0E-06 TTTATATAATTAA 13 HOXB3_homeodomain_DBD_monomeric_10_1 SELEX - 56889897 56889906 9.0E-06 TATAATTAAA 10 MNX1_homeodomain_DBD_monomeric_10_1 SELEX - 56889897 56889906 3.0E-06 TATAATTAAA 10 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX - 56889896 56889906 9.0E-06 TATAATTAAAA 11 DLX5_homeodomain_FL_monomeric_8_1 SELEX - 56889898 56889905 8.0E-06 ATAATTAA 8 V_HNF3B_01_M00131 TRANSFAC + 56890071 56890085 6.0E-06 GGAAATGTTTTGTTT 15 V_DBX1_01_M01483 TRANSFAC + 56889888 56889904 7.0E-06 TAGTTTAGTTTTAATTA 17 V_DBX1_01_M01483 TRANSFAC - 56889892 56889908 0.0E+00 TATATAATTAAAACTAA 17 V_DBX1_01_M01483 TRANSFAC + 56889895 56889911 5.0E-06 GTTTTAATTATATAAAA 17 V_CEBP_Q3_M00770 TRANSFAC + 56890196 56890207 5.0E-06 GAATTTGGAAAT 12 V_DLX3_01_M01400 TRANSFAC + 56889893 56889909 8.0E-06 TAGTTTTAATTATATAA 17 V_HMGIY_Q3_M01010 TRANSFAC - 56889849 56889863 3.0E-06 TAAGCATTTTCTTGA 15 V_BCL6_01_M01183 TRANSFAC - 56890279 56890294 6.0E-06 TAAGAAGTAGTATTTT 16 V_HOXA13_02_M01297 TRANSFAC + 56889904 56889912 7.0E-06 ATATAAAAC 9 V_SATB1_Q3_M01723 TRANSFAC + 56889894 56889909 8.0E-06 AGTTTTAATTATATAA 16 V_CBF_02_M01080 TRANSFAC + 56890151 56890166 1.0E-05 CTAACTGTGGTTCTAA 16 V_MEF2_02_M00231 TRANSFAC - 56889893 56889914 8.0E-06 TGGTTTTATATAATTAAAACTA 22 V_CEBP_01_M00159 TRANSFAC - 56890037 56890049 6.0E-06 AATTTGTTAAGTT 13 V_RFX4_03_M02789 TRANSFAC + 56890623 56890637 1.0E-06 CTCCTTAGCAACCAG 15 V_HOXC4_01_M01369 TRANSFAC + 56889894 56889910 5.0E-06 AGTTTTAATTATATAAA 17 V_GABPA_04_M02858 TRANSFAC - 56890008 56890023 6.0E-06 CCTTTTTTCCATTGCT 16 V_GATA_C_M00203 TRANSFAC - 56890046 56890056 8.0E-06 AGATAAAAATT 11 V_HFH4_01_M00742 TRANSFAC + 56889757 56889769 7.0E-06 AAACGTTTGCTTT 13 V_HFH4_01_M00742 TRANSFAC - 56890040 56890052 5.0E-06 AAAAATTTGTTAA 13 V_DLX2_01_M01468 TRANSFAC + 56889895 56889910 6.0E-06 GTTTTAATTATATAAA 16 V_LHX3_01_M01471 TRANSFAC + 56889894 56889910 7.0E-06 AGTTTTAATTATATAAA 17 V_SOX21_03_M02803 TRANSFAC + 56889897 56889912 4.0E-06 TTTAATTATATAAAAC 16 V_SOX21_03_M02803 TRANSFAC - 56889897 56889912 9.0E-06 GTTTTATATAATTAAA 16 V_NFAT2_01_M01748 TRANSFAC + 56890012 56890020 3.0E-06 ATGGAAAAA 9 V_CDX_Q5_M00991 TRANSFAC + 56889872 56889889 8.0E-06 AATCACCAAAGACATGTA 18 V_PAX7_01_M01339 TRANSFAC - 56889893 56889909 5.0E-06 TTATATAATTAAAACTA 17 V_PAX7_01_M01339 TRANSFAC + 56889894 56889910 3.0E-06 AGTTTTAATTATATAAA 17 V_KLF7_04_M02877 TRANSFAC - 56890503 56890519 9.0E-06 GATGATACGCCCACTTC 17 V_LMX1_01_M01409 TRANSFAC - 56889893 56889909 6.0E-06 TTATATAATTAAAACTA 17 V_LMX1_01_M01409 TRANSFAC + 56889894 56889910 1.0E-06 AGTTTTAATTATATAAA 17 V_ZFP105_03_M02827 TRANSFAC - 56889892 56889906 9.0E-06 TATAATTAAAACTAA 15 V_NFAT_Q6_M00302 TRANSFAC + 56890010 56890021 2.0E-06 CAATGGAAAAAA 12 V_NKX61_01_M00424 TRANSFAC + 56889895 56889907 7.0E-06 GTTTTAATTATAT 13 V_RFXDC2_03_M02790 TRANSFAC + 56890623 56890637 2.0E-06 CTCCTTAGCAACCAG 15 V_OCT1_04_M00138 TRANSFAC + 56889896 56889918 9.0E-06 TTTTAATTATATAAAACCAAAGC 23 V_OCT1_08_M01354 TRANSFAC + 56889893 56889908 3.0E-06 TAGTTTTAATTATATA 16 V_PIT1_01_M01465 TRANSFAC - 56889895 56889911 6.0E-06 TTTTATATAATTAAAAC 17 V_PIT1_01_M01465 TRANSFAC + 56889896 56889912 6.0E-06 TTTTAATTATATAAAAC 17 V_SOX12_04_M02900 TRANSFAC - 56890078 56890093 4.0E-06 CATCACACAAACAAAA 16 V_BBX_04_M02843 TRANSFAC + 56890018 56890034 1.0E-06 AAAAGGTTAACAGCTTG 17 V_RREB1_01_M00257 TRANSFAC - 56890076 56890089 8.0E-06 ACACAAACAAAACA 14 V_HFH1_01_M00129 TRANSFAC + 56889886 56889897 7.0E-06 TGTAGTTTAGTT 12 V_NKX3A_01_M00451 TRANSFAC + 56889896 56889907 5.0E-06 TTTTAATTATAT 12 V_NCX_02_M01420 TRANSFAC - 56889892 56889908 2.0E-06 TATATAATTAAAACTAA 17 V_ARID3A_04_M02735 TRANSFAC - 56889893 56889909 1.0E-06 TTATATAATTAAAACTA 17 V_ARID3A_04_M02735 TRANSFAC + 56889894 56889910 1.0E-06 AGTTTTAATTATATAAA 17 V_ISGF3G_03_M02771 TRANSFAC - 56889892 56889906 7.0E-06 TATAATTAAAACTAA 15 V_TBP_06_M02814 TRANSFAC + 56889897 56889912 1.0E-06 TTTAATTATATAAAAC 16 V_TBP_06_M02814 TRANSFAC - 56889897 56889912 1.0E-06 GTTTTATATAATTAAA 16 V_TBP_06_M02814 TRANSFAC + 56889899 56889914 3.0E-06 TAATTATATAAAACCA 16 V_TBP_06_M02814 TRANSFAC - 56889899 56889914 2.0E-06 TGGTTTTATATAATTA 16 V_IRX3_01_M01318 TRANSFAC + 56889878 56889894 1.0E-05 CAAAGACATGTAGTTTA 17 V_ISGF4G_04_M02875 TRANSFAC + 56890033 56890046 1.0E-05 TGAAAACTTAACAA 14 V_IRX5_01_M01472 TRANSFAC + 56889878 56889894 8.0E-06 CAAAGACATGTAGTTTA 17 V_LIM1_01_M01418 TRANSFAC + 56889894 56889910 2.0E-06 AGTTTTAATTATATAAA 17 V_HOXA7_02_M01336 TRANSFAC + 56889894 56889910 9.0E-06 AGTTTTAATTATATAAA 17 V_TTF1_Q5_M02034 TRANSFAC + 56890469 56890482 1.0E-06 GGGCACTTGACAGA 14 V_HAND1E47_01_M00222 TRANSFAC + 56890047 56890062 6.0E-06 ATTTTTATCTGGCTTG 16 V_FAC1_01_M00456 TRANSFAC - 56890074 56890087 9.0E-06 ACAAACAAAACATT 14 V_BRN4_01_M01473 TRANSFAC - 56889895 56889911 6.0E-06 TTTTATATAATTAAAAC 17 V_BRN4_01_M01473 TRANSFAC + 56889896 56889912 6.0E-06 TTTTAATTATATAAAAC 17 V_FOXL1_02_M02857 TRANSFAC - 56889889 56889904 5.0E-06 TAATTAAAACTAAACT 16 V_FOXL1_02_M02857 TRANSFAC + 56890035 56890050 6.0E-06 AAAACTTAACAAATTT 16 V_FOXJ3_06_M02855 TRANSFAC - 56890071 56890087 3.0E-06 ACAAACAAAACATTTCC 17 V_PARP_Q3_M01211 TRANSFAC + 56890200 56890209 8.0E-06 TTGGAAATAC 10 V_NKX22_01_M00485 TRANSFAC + 56888898 56888907 9.0E-06 ACAAGTACTT 10 V_LMX1B_01_M01363 TRANSFAC + 56889893 56889909 7.0E-06 TAGTTTTAATTATATAA 17 V_LMX1B_01_M01363 TRANSFAC - 56889894 56889910 3.0E-06 TTTATATAATTAAAACT 17 V_STAT1STAT1_Q3_M01212 TRANSFAC - 56890064 56890076 3.0E-06 ATTTCCACGAACA 13 V_ZABC1_01_M01306 TRANSFAC - 56889786 56889793 1.0E-05 ATTCCAAC 8 V_PLZF_02_M01075 TRANSFAC - 56889884 56889912 9.0E-06 GTTTTATATAATTAAAACTAAACTACATG 29 V_SIX4_01_M01374 TRANSFAC + 56890097 56890113 9.0E-06 ATATATGACAACACTTA 17 V_IRX2_01_M01405 TRANSFAC + 56889878 56889894 1.0E-05 CAAAGACATGTAGTTTA 17 V_HOXD8_01_M01432 TRANSFAC - 56889892 56889908 5.0E-06 TATATAATTAAAACTAA 17 V_RFX3_04_M02788 TRANSFAC + 56890619 56890641 0.0E+00 TGCTCTCCTTAGCAACCAGTCTA 23 V_MOX1_01_M01443 TRANSFAC + 56889895 56889910 9.0E-06 GTTTTAATTATATAAA 16 V_HOXD3_01_M01338 TRANSFAC - 56889895 56889910 5.0E-06 TTTATATAATTAAAAC 16 V_LHX5_01_M01353 TRANSFAC + 56889894 56889910 5.0E-06 AGTTTTAATTATATAAA 17 V_HOXA10_01_M01464 TRANSFAC - 56889893 56889908 3.0E-06 TATATAATTAAAACTA 16 V_ZFP128_04_M02932 TRANSFAC - 56889895 56889908 9.0E-06 TATATAATTAAAAC 14 V_DLX1_01_M01439 TRANSFAC - 56889897 56889910 6.0E-06 TTTATATAATTAAA 14 V_HOXD10_01_M01375 TRANSFAC - 56889892 56889908 1.0E-05 TATATAATTAAAACTAA 17 V_TCF3_05_M02920 TRANSFAC - 56890046 56890060 2.0E-06 AGCCAGATAAAAATT 15 V_GLIS2_04_M02863 TRANSFAC - 56889895 56889908 2.0E-06 TATATAATTAAAAC 14 V_SOX14_03_M02798 TRANSFAC + 56889897 56889912 8.0E-06 TTTAATTATATAAAAC 16 V_HOXC8_01_M01321 TRANSFAC - 56889895 56889910 1.0E-05 TTTATATAATTAAAAC 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.