Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

GTPBP8 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 29083 GTP-binding protein 8 (putative) chr3 + 112704799 - 112710299 112709799 Transcription Factor Binding Sites   Download all TFBS in the GTPBP8 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX20_TBX_full_monomeric_11_1 SELEX - 112709526 112709536 3.0E-06 AAAGTGTGAAG 11 MYBL2_MYB_DBD_dimeric_15_1 SELEX + 112709593 112709607 2.0E-06 AACCGTTAAACATCC 15 HOXA10_homeodomain_DBD_monomeric_12_1 SELEX - 112709314 112709325 4.0E-06 TGTCATTAAATT 12 FOXF2_MA0030.1 JASPAR - 112709429 112709442 9.0E-06 CTAGGATAAACACT 14 NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX + 112710407 112710415 3.0E-06 TAAAGTCAA 9 TBX20_TBX_DBD_dimeric_19_1 SELEX + 112709489 112709507 4.0E-06 AACTGTGAAAATCAAACGT 19 SOX8_HMG_full_dimeric_17_1 SELEX - 112709305 112709321 9.0E-06 ATTAAATTTTAGAGATT 17 EWSR1-FLI1_MA0149.1 JASPAR + 112706084 112706101 1.0E-05 GAAAAACAGCAAGGAAGC 18 STAT1_MA0137.2 JASPAR - 112709829 112709843 5.0E-06 CCCTTCCCAGAAGAC 15 IRF7_IRF_DBD_trimeric_17_1 SELEX + 112710409 112710425 5.0E-06 AAGTCAAAAATCGTTAA 17 TBX1_TBX_DBD_dimeric_19_1 SELEX + 112709489 112709507 2.0E-06 AACTGTGAAAATCAAACGT 19 TBX1_TBX_DBD_dimeric_19_1 SELEX - 112709489 112709507 3.0E-06 ACGTTTGATTTTCACAGTT 19 RUNX3_RUNX_full_monomeric_10_1 SELEX - 112710265 112710274 4.0E-06 CAACCGCAAA 10 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX - 112709315 112709324 5.0E-06 GTCATTAAAT 10 MYBL2_MYB_DBD_monomeric_11_1 SELEX + 112709591 112709601 2.0E-06 CAAACCGTTAA 11 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX - 112709294 112709303 9.0E-06 CTTATAAAAA 10 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 112709464 112709477 4.0E-06 GTCAACAGTTAATA 14 ONECUT2_CUT_DBD_monomeric_14_1 SELEX + 112710413 112710426 8.0E-06 CAAAAATCGTTAAG 14 HOXC11_homeodomain_DBD_monomeric_11_1 SELEX - 112709315 112709325 5.0E-06 TGTCATTAAAT 11 HOXA13_homeodomain_full_monomeric_10_1 SELEX - 112709294 112709303 7.0E-06 CTTATAAAAA 10 TBX21_TBX_full_monomeric_10_1 SELEX - 112709527 112709536 3.0E-06 AAAGTGTGAA 10 Hoxa11_homeodomain_DBD_monomeric_12_1 SELEX - 112709314 112709325 5.0E-06 TGTCATTAAATT 12 FEV_MA0156.1 JASPAR - 112709325 112709332 1.0E-05 CAGGAAAT 8 Myf_MA0055.1 JASPAR + 112709967 112709978 1.0E-06 AAGCAGCAGCTG 12 HOXA13_homeodomain_full_monomeric_11_1 SELEX - 112709294 112709304 4.0E-06 TCTTATAAAAA 11 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX - 112709315 112709324 3.0E-06 GTCATTAAAT 10 MYBL1_MYB_DBD_monomeric_11_1 SELEX + 112709591 112709601 1.0E-06 CAAACCGTTAA 11 NEUROG2_bHLH_full_dimeric_10_1 SELEX - 112710320 112710329 5.0E-06 GACATATGCC 10 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX - 112709294 112709303 6.0E-06 CTTATAAAAA 10 NRF1_NRF_full_dimeric_12_1 SELEX + 112709785 112709796 9.0E-06 CACGCACGCGCA 12 Sox2_MA0143.1 JASPAR + 112710363 112710377 4.0E-06 CCATTGTTAAGTACA 15 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 112709349 112709361 7.0E-06 GGAAATACAAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 112709458 112709470 4.0E-06 ACAAACGTCAACA 13 E2F2_E2F_DBD_dimeric_18_1 SELEX - 112710288 112710305 1.0E-06 AATATATGCGCCAACATA 18 HNF1A_MA0046.1 JASPAR + 112709162 112709175 7.0E-06 AGTTATTCATTTCA 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 112709464 112709477 2.0E-06 GTCAACAGTTAATA 14 V_HOXA9_01_M01351 TRANSFAC - 112709311 112709327 0.0E+00 AATGTCATTAAATTTTA 17 V_HNF3B_01_M00131 TRANSFAC - 112709352 112709366 8.0E-06 GGGACTGTTTGTATT 15 V_STAT5A_Q6_M01890 TRANSFAC - 112709297 112709309 3.0E-06 AGATTTCTTATAA 13 V_TBX15_01_M01263 TRANSFAC + 112709489 112709507 8.0E-06 AACTGTGAAAATCAAACGT 19 V_TBX15_01_M01263 TRANSFAC - 112709489 112709507 8.0E-06 ACGTTTGATTTTCACAGTT 19 V_EVI1_05_M00082 TRANSFAC + 112709473 112709483 4.0E-06 TAATAAGATAA 11 V_SIX6_02_M01398 TRANSFAC - 112709177 112709193 9.0E-06 ATACAGGTATCATAATG 17 V_SOX30_03_M02804 TRANSFAC - 112710359 112710374 3.0E-06 ACTTAACAATGGGTTT 16 V_ETS_B_M00340 TRANSFAC - 112709321 112709334 8.0E-06 TGCAGGAAATGTCA 14 V_SATB1_Q3_M01723 TRANSFAC + 112709313 112709328 0.0E+00 AAATTTAATGACATTT 16 V_MAFB_03_M02879 TRANSFAC - 112709416 112709430 0.0E+00 CTTTTGCAAAAAAGA 15 V_TBR2_01_M01774 TRANSFAC - 112709527 112709535 1.0E-05 AAGTGTGAA 9 V_IRF_Q6_01_M00972 TRANSFAC - 112709413 112709423 6.0E-06 AAAAAAGAAAA 11 V_MYB_05_M02779 TRANSFAC + 112709588 112709604 0.0E+00 CTGCAAACCGTTAAACA 17 V_NKX61_03_M01489 TRANSFAC + 112709312 112709328 2.0E-06 AAAATTTAATGACATTT 17 V_AIRE_02_M01000 TRANSFAC - 112709456 112709480 7.0E-06 TCTTATTAACTGTTGACGTTTGTCG 25 V_AIRE_02_M01000 TRANSFAC + 112710259 112710283 1.0E-06 GGTGATTTTGCGGTTGTATTTTCTA 25 V_HOXD13_01_M01404 TRANSFAC - 112709291 112709306 4.0E-06 TTTCTTATAAAAACAG 16 V_SOX21_03_M02803 TRANSFAC - 112710299 112710314 8.0E-06 AGTTAAAATAATATAT 16 V_HOXA13_03_M01430 TRANSFAC - 112709292 112709307 8.0E-06 ATTTCTTATAAAAACA 16 V_HOXC13_01_M01317 TRANSFAC - 112709292 112709307 2.0E-06 ATTTCTTATAAAAACA 16 V_HOXC13_01_M01317 TRANSFAC - 112709313 112709328 2.0E-06 AAATGTCATTAAATTT 16 V_STAT4_Q4_M01666 TRANSFAC - 112709292 112709305 7.0E-06 TTCTTATAAAAACA 14 V_BARBIE_01_M00238 TRANSFAC - 112709934 112709948 6.0E-06 AGCAAAAGCTTGGGA 15 V_ELF4_04_M02850 TRANSFAC - 112709290 112709306 6.0E-06 TTTCTTATAAAAACAGT 17 V_ELF4_04_M02850 TRANSFAC - 112710297 112710313 1.0E-06 GTTAAAATAATATATGC 17 V_SOX7_03_M02807 TRANSFAC - 112710356 112710377 7.0E-06 TGTACTTAACAATGGGTTTCTC 22 V_FOXA2_02_M02853 TRANSFAC - 112710297 112710311 8.0E-06 TAAAATAATATATGC 15 V_IPF1_Q4_M00436 TRANSFAC + 112709314 112709325 0.0E+00 AATTTAATGACA 12 V_MYF_01_M01302 TRANSFAC + 112709967 112709978 1.0E-06 AAGCAGCAGCTG 12 V_ZFP105_03_M02827 TRANSFAC - 112709412 112709426 9.0E-06 TGCAAAAAAGAAAAG 15 V_OCT1_03_M00137 TRANSFAC - 112709173 112709185 1.0E-06 ATCATAATGATGA 13 V_TBX18_01_M01262 TRANSFAC + 112709489 112709507 5.0E-06 AACTGTGAAAATCAAACGT 19 V_SIX1_01_M01313 TRANSFAC - 112709177 112709193 4.0E-06 ATACAGGTATCATAATG 17 V_NKX31_02_M02782 TRANSFAC - 112710365 112710381 9.0E-06 ATTTTGTACTTAACAAT 17 V_CEBPD_Q6_M00621 TRANSFAC + 112709169 112709180 1.0E-06 CATTTCATCATT 12 V_HOXD12_01_M01380 TRANSFAC - 112709312 112709328 6.0E-06 AAATGTCATTAAATTTT 17 V_HOXB9_01_M01426 TRANSFAC - 112709312 112709327 7.0E-06 AATGTCATTAAATTTT 16 V_ARID3A_02_M02839 TRANSFAC - 112709177 112709191 3.0E-06 ACAGGTATCATAATG 15 V_MYBL1_03_M02780 TRANSFAC + 112709588 112709604 0.0E+00 CTGCAAACCGTTAAACA 17 V_CDX2_01_M01449 TRANSFAC - 112709313 112709328 2.0E-06 AAATGTCATTAAATTT 16 V_HNF3_Q6_M00791 TRANSFAC + 112709351 112709363 1.0E-06 AAATACAAACAGT 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 112709351 112709361 3.0E-06 TGTTTGTATTT 11 V_IRF_Q6_M00772 TRANSFAC + 112709409 112709423 8.0E-06 GCCCTTTTCTTTTTT 15 V_CDX2_Q5_M00729 TRANSFAC + 112709312 112709325 1.0E-06 AAAATTTAATGACA 14 V_HOXC11_01_M01329 TRANSFAC - 112709313 112709328 1.0E-06 AAATGTCATTAAATTT 16 V_HNF1_Q6_01_M01011 TRANSFAC + 112709467 112709487 9.0E-06 AACAGTTAATAAGATAACCAA 21 V_SOX18_03_M02801 TRANSFAC + 112710299 112710314 9.0E-06 ATATATTATTTTAACT 16 V_HOXD11_01_M01434 TRANSFAC - 112709312 112709328 1.0E-06 AAATGTCATTAAATTTT 17 V_ASCL2_03_M02737 TRANSFAC - 112709967 112709983 1.0E-06 TTCCTCAGCTGCTGCTT 17 V_CDX1_01_M01373 TRANSFAC - 112709313 112709328 0.0E+00 AAATGTCATTAAATTT 16 V_MEF2_04_M00233 TRANSFAC - 112710299 112710320 5.0E-06 CTATTGAGTTAAAATAATATAT 22 V_TEL2_Q6_M00678 TRANSFAC - 112710000 112710009 1.0E-06 CTACTTCCTG 10 V_CDC5_01_M00478 TRANSFAC - 112710304 112710315 1.0E-06 GAGTTAAAATAA 12 V_NCX_02_M01420 TRANSFAC + 112709310 112709326 7.0E-06 CTAAAATTTAATGACAT 17 V_VMYB_01_M00003 TRANSFAC - 112709159 112709168 1.0E-06 AATAACTGAA 10 V_STAT4_Q5_M02117 TRANSFAC + 112709297 112709306 0.0E+00 TTATAAGAAA 10 V_HOXA11_01_M01378 TRANSFAC - 112709313 112709328 1.0E-06 AAATGTCATTAAATTT 16 V_SP1_01_M00008 TRANSFAC - 112710154 112710163 1.0E-05 GGGGCGTGGT 10 V_STAT3_03_M01595 TRANSFAC + 112709830 112709845 1.0E-06 TCTTCTGGGAAGGGAG 16 V_NKX63_01_M01470 TRANSFAC + 112709312 112709328 2.0E-06 AAAATTTAATGACATTT 17 V_SIX2_01_M01433 TRANSFAC - 112709177 112709193 1.0E-05 ATACAGGTATCATAATG 17 V_SOX9_B1_M00410 TRANSFAC - 112710361 112710374 2.0E-06 ACTTAACAATGGGT 14 V_NKX32_02_M01482 TRANSFAC - 112710365 112710381 5.0E-06 ATTTTGTACTTAACAAT 17 V_SOX15_03_M02799 TRANSFAC - 112710359 112710375 2.0E-06 TACTTAACAATGGGTTT 17 V_ZIC2_05_M02940 TRANSFAC + 112709754 112709768 7.0E-06 ACTCCCAGCAGGCGT 15 V_IPF1_05_M01255 TRANSFAC - 112709314 112709325 7.0E-06 TGTCATTAAATT 12 V_CBF_01_M01079 TRANSFAC + 112710262 112710277 4.0E-06 GATTTTGCGGTTGTAT 16 V_NKX61_02_M01469 TRANSFAC + 112709312 112709327 8.0E-06 AAAATTTAATGACATT 16 V_ZBTB4_04_M02929 TRANSFAC + 112709485 112709500 2.0E-06 CAAAAACTGTGAAAAT 16 V_TCF7_04_M02921 TRANSFAC - 112709293 112709307 6.0E-06 ATTTCTTATAAAAAC 15 V_TCF1_06_M02815 TRANSFAC + 112709474 112709490 1.0E-06 AATAAGATAACCAAAAA 17 V_CREB_Q2_M00177 TRANSFAC - 112710126 112710137 9.0E-06 GCTGACGTAGTC 12 V_PLZF_02_M01075 TRANSFAC - 112710295 112710323 2.0E-06 TGCCTATTGAGTTAAAATAATATATGCGC 29 V_IRC900814_03_M02766 TRANSFAC + 112709451 112709466 1.0E-06 ACTTACGACAAACGTC 16 V_SOX2_01_M02246 TRANSFAC + 112710363 112710377 4.0E-06 CCATTGTTAAGTACA 15 V_EWSR1FLI1_01_M02252 TRANSFAC + 112706084 112706101 1.0E-05 GAAAAACAGCAAGGAAGC 18 V_SIX6_01_M01345 TRANSFAC - 112709177 112709193 2.0E-06 ATACAGGTATCATAATG 17 V_HNF1A_Q5_M02013 TRANSFAC + 112709162 112709172 3.0E-06 AGTTATTCATT 11 V_SOX1_03_M02802 TRANSFAC + 112709161 112709176 7.0E-06 CAGTTATTCATTTCAT 16 V_HOXC10_01_M01361 TRANSFAC - 112709313 112709328 1.0E-06 AAATGTCATTAAATTT 16 V_SOX15_04_M02903 TRANSFAC + 112709316 112709330 2.0E-06 TTTAATGACATTTCC 15 V_SOX15_04_M02903 TRANSFAC - 112709316 112709330 4.0E-06 GGAAATGTCATTAAA 15 V_PAX1_B_M00326 TRANSFAC - 112709715 112709732 6.0E-06 TCGTTCCGGTCTAAGTGT 18 V_FREAC4_01_M00292 TRANSFAC - 112709427 112709442 6.0E-06 CTAGGATAAACACTTT 16 V_FOXO4_01_M00472 TRANSFAC - 112709427 112709437 8.0E-06 ATAAACACTTT 11 V_HOXA10_01_M01464 TRANSFAC - 112709312 112709327 0.0E+00 AATGTCATTAAATTTT 16 V_GATA6_04_M02757 TRANSFAC + 112709473 112709489 7.0E-06 TAATAAGATAACCAAAA 17 V_EHF_07_M02849 TRANSFAC + 112710272 112710287 1.0E-05 TTGTATTTTCTAGCTT 16 V_HOXD10_01_M01375 TRANSFAC - 112709311 112709327 0.0E+00 AATGTCATTAAATTTTA 17 V_TAACC_B_M00331 TRANSFAC + 112709469 112709491 0.0E+00 CAGTTAATAAGATAACCAAAAAC 23 V_HNF1A_01_M02162 TRANSFAC + 112709162 112709175 7.0E-06 AGTTATTCATTTCA 14 V_ZID_01_M00085 TRANSFAC - 112709900 112709912 7.0E-06 TCGCTCTAGCACC 13 V_FEV_01_M02269 TRANSFAC - 112709325 112709332 1.0E-05 CAGGAAAT 8 V_GLIS2_04_M02863 TRANSFAC + 112710300 112710313 8.0E-06 TATATTATTTTAAC 14 V_STAT1_05_M01260 TRANSFAC + 112709294 112709315 8.0E-06 TTTTTATAAGAAATCTCTAAAA 22 V_STAT1_05_M01260 TRANSFAC + 112709829 112709850 1.0E-06 GTCTTCTGGGAAGGGAGAATGG 22 V_EVI1_03_M00080 TRANSFAC + 112709473 112709483 7.0E-06 TAATAAGATAA 11 V_SMAD1_01_M01590 TRANSFAC - 112709411 112709422 5.0E-06 AAAAAGAAAAGG 12 V_ZIC1_05_M02939 TRANSFAC + 112709754 112709768 9.0E-06 ACTCCCAGCAGGCGT 15 V_HOXC9_01_M01416 TRANSFAC - 112709313 112709328 0.0E+00 AAATGTCATTAAATTT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.