Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

GRIK5 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 2901 glutamate receptor, ionotropic, kainate 5 chr19 - 42569457 - 42574957 42569957 Transcription Factor Binding Sites   Download all TFBS in the GRIK5 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints EWSR1-FLI1_MA0149.1 JASPAR + 42574384 42574401 0.0E+00 GGGAGGGAGGGAGGCAGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 42574385 42574402 6.0E-06 GGAGGGAGGGAGGCAGGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 42574388 42574405 1.0E-06 GGGAGGGAGGCAGGGAGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 42574392 42574409 1.0E-06 GGGAGGCAGGGAGGAGGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 42574400 42574417 4.0E-06 GGGAGGAGGGCGGGCAGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 42574415 42574432 6.0E-06 AGGAGGAAGGGAGGGAGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 42574419 42574436 0.0E+00 GGAAGGGAGGGAGGCAGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 42574423 42574440 1.0E-06 GGGAGGGAGGCAGGCAAA 18 RFX2_RFX_DBD_dimeric_15_1 SELEX + 42570371 42570385 0.0E+00 CGTTACTAGGCAACA 15 RFX2_RFX_DBD_dimeric_15_1 SELEX + 42570410 42570424 0.0E+00 GGTTGCTAGGCAACC 15 RFX2_RFX_DBD_dimeric_15_1 SELEX - 42570410 42570424 7.0E-06 GGTTGCCTAGCAACC 15 SP1_MA0079.2 JASPAR - 42574462 42574471 3.0E-06 CCCCTCCCCC 10 znf143_MA0088.1 JASPAR + 42570462 42570481 3.0E-06 CAGTTCCCACAATCCCATGG 20 RFX3_RFX_DBD_dimeric_15_1 SELEX + 42570371 42570385 0.0E+00 CGTTACTAGGCAACA 15 RFX3_RFX_DBD_dimeric_15_1 SELEX + 42570410 42570424 0.0E+00 GGTTGCTAGGCAACC 15 ZNF143_C2H2_DBD_monomeric_16_1 SELEX + 42570465 42570480 1.0E-06 TTCCCACAATCCCATG 16 RFX4_RFX_DBD_dimeric_15_1 SELEX + 42570371 42570385 0.0E+00 CGTTACTAGGCAACA 15 RFX4_RFX_DBD_dimeric_15_1 SELEX + 42570410 42570424 0.0E+00 GGTTGCTAGGCAACC 15 ZBTB7C_C2H2_full_monomeric_12_1 SELEX - 42570404 42570415 8.0E-06 GCAACCACCGCA 12 GLIS2_C2H2_DBD_monomeric_14_1 SELEX + 42574496 42574509 4.0E-06 GGCCCCCCGCGAGG 14 V_RFX4_03_M02789 TRANSFAC - 42570408 42570422 5.0E-06 TTGCCTAGCAACCAC 15 V_SP1_03_M02281 TRANSFAC - 42574462 42574471 3.0E-06 CCCCTCCCCC 10 V_ZNF219_01_M01122 TRANSFAC + 42570330 42570341 2.0E-06 CACCCCCCACCC 12 V_STAF_01_M00262 TRANSFAC + 42570463 42570484 4.0E-06 AGTTCCCACAATCCCATGGGGA 22 V_RFX1_01_M00280 TRANSFAC + 42570370 42570386 6.0E-06 CCGTTACTAGGCAACAG 17 V_RFX1_01_M00280 TRANSFAC - 42570370 42570386 4.0E-06 CTGTTGCCTAGTAACGG 17 V_RFX1_01_M00280 TRANSFAC + 42570409 42570425 4.0E-06 TGGTTGCTAGGCAACCC 17 V_RFX1_01_M00280 TRANSFAC - 42570409 42570425 0.0E+00 GGGTTGCCTAGCAACCA 17 V_ZBP89_Q4_M01816 TRANSFAC - 42573270 42573279 4.0E-06 CCCTCCCCCA 10 V_MAZ_Q6_01_M02023 TRANSFAC + 42574382 42574395 3.0E-06 GAGGGAGGGAGGGA 14 V_AP2BETA_Q3_M01858 TRANSFAC + 42574483 42574498 6.0E-06 GGTTGGGGCTGGGGGC 16 V_RFXDC2_03_M02790 TRANSFAC - 42570408 42570422 3.0E-06 TTGCCTAGCAACCAC 15 V_TFIII_Q6_M00706 TRANSFAC + 42574381 42574389 6.0E-06 AGAGGGAGG 9 V_TAL1_01_M01591 TRANSFAC - 42573834 42573846 0.0E+00 CTTCCTTTTCTCC 13 V_RBPJK_01_M01112 TRANSFAC - 42570464 42570474 8.0E-06 ATTGTGGGAAC 11 V_FPM315_01_M01587 TRANSFAC + 42574398 42574409 1.0E-06 CAGGGAGGAGGG 12 V_ZFP281_01_M01597 TRANSFAC + 42574461 42574471 7.0E-06 CGGGGGAGGGG 11 V_EWSR1FLI1_01_M02252 TRANSFAC + 42574384 42574401 0.0E+00 GGGAGGGAGGGAGGCAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 42574385 42574402 6.0E-06 GGAGGGAGGGAGGCAGGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 42574388 42574405 1.0E-06 GGGAGGGAGGCAGGGAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 42574392 42574409 1.0E-06 GGGAGGCAGGGAGGAGGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 42574400 42574417 4.0E-06 GGGAGGAGGGCGGGCAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 42574415 42574432 6.0E-06 AGGAGGAAGGGAGGGAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 42574419 42574436 0.0E+00 GGAAGGGAGGGAGGCAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 42574423 42574440 1.0E-06 GGGAGGGAGGCAGGCAAA 18 V_EFC_Q6_M00626 TRANSFAC + 42570371 42570384 0.0E+00 CGTTACTAGGCAAC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC + 42574459 42574472 4.0E-06 GTCGGGGGAGGGGG 14 V_BRCA_01_M01082 TRANSFAC - 42570381 42570388 1.0E-05 TTCTGTTG 8 V_MIF1_01_M00279 TRANSFAC - 42570369 42570386 3.0E-06 CTGTTGCCTAGTAACGGC 18 V_MIF1_01_M00279 TRANSFAC + 42570409 42570426 0.0E+00 TGGTTGCTAGGCAACCCC 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.