Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RGCC Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 28984 regulator of cell cycle chr13 + 42026541 - 42032041 42031541 Transcription Factor Binding Sites   Download all TFBS in the RGCC promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 42034431 42034448 9.0E-06 GCAATTAAGATATACATA 18 IRF7_IRF_DBD_dimeric_14_1 SELEX - 42033859 42033872 5.0E-06 TTGAAATTGAAAAT 14 RARA_nuclearreceptor_full_dimeric_18_1 SELEX + 42032771 42032788 6.0E-06 AAAGGTCGCTGGAGGGCA 18 ESR2_MA0258.1 JASPAR + 42033270 42033287 2.0E-06 CAGGGTCTCTTTGTCCTG 18 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX + 42032772 42032788 1.0E-05 AAGGTCGCTGGAGGGCA 17 RARG_nuclearreceptor_full_dimeric_17_1 SELEX + 42032772 42032788 1.0E-05 AAGGTCGCTGGAGGGCA 17 SCRT2_C2H2_DBD_monomeric_13_1 SELEX - 42033113 42033125 9.0E-06 GAGCAACAAGTCT 13 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 42031475 42031488 7.0E-06 CCCAAATATTTACC 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 42033880 42033893 4.0E-06 CAAAAATGTTAACA 14 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX - 42031555 42031566 2.0E-06 TGCCCCCAGGCA 12 HMX3_homeodomain_DBD_monomeric_11_1 SELEX - 42034439 42034449 2.0E-06 AGCAATTAAGA 11 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 42031475 42031488 1.0E-05 CCCAAATATTTACC 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 42033880 42033893 8.0E-06 TGTTAACATTTTTG 14 HNF4A_nuclearreceptor_full_dimeric_16_1 SELEX - 42033830 42033845 0.0E+00 AAGAACAAAGTCCAAA 16 Gata1_MA0035.2 JASPAR - 42032686 42032696 1.0E-06 ACTGATAAGAA 11 POU1F1_POU_DBD_monomeric_17_1 SELEX - 42033011 42033027 4.0E-06 TTCATGAATATTTCCGT 17 HESX1_homeodomain_DBD_dimeric_15_1 SELEX + 42034402 42034416 9.0E-06 CTAAATAGTAATTTC 15 LHX9_homeodomain_DBD_dimeric_13_1 SELEX - 42034403 42034415 7.0E-06 AAATTACTATTTA 13 INSM1_MA0155.1 JASPAR + 42031555 42031566 3.0E-06 TGCCTGGGGGCA 12 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 42033857 42033871 7.0E-06 TGAAATTGAAAATGA 15 Nkx3-2_MA0122.1 JASPAR - 42033817 42033825 8.0E-06 CTAAGTGGA 9 TFAP2C_TFAP_full_dimeric_12_1 SELEX - 42031555 42031566 4.0E-06 TGCCCCCAGGCA 12 Pou5f1_MA0142.1 JASPAR + 42033445 42033459 5.0E-06 TATTGTTTTTCAAAG 15 Pou5f1_MA0142.1 JASPAR - 42033860 42033874 7.0E-06 CTTTGAAATTGAAAA 15 HNF4A_MA0114.1 JASPAR - 42033832 42033844 6.0E-06 AGAACAAAGTCCA 13 IRF4_IRF_full_dimeric_15_1 SELEX - 42033858 42033872 8.0E-06 TTGAAATTGAAAATG 15 HMX2_homeodomain_DBD_monomeric_11_1 SELEX - 42034439 42034449 5.0E-06 AGCAATTAAGA 11 REST_MA0138.2 JASPAR + 42033687 42033707 9.0E-06 CTCACCACCCTGGTCAGGGTT 21 IRF3_IRF_full_trimeric_21_1 SELEX - 42033852 42033872 3.0E-06 TTGAAATTGAAAATGAACCTA 21 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX - 42031555 42031566 0.0E+00 TGCCCCCAGGCA 12 Sox2_MA0143.1 JASPAR + 42033444 42033458 1.0E-06 TTATTGTTTTTCAAA 15 FOXL1_MA0033.1 JASPAR - 42034431 42034438 5.0E-06 TATACATA 8 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX - 42031555 42031566 1.0E-06 TGCCCCCAGGCA 12 HNF1A_MA0046.1 JASPAR + 42033956 42033969 8.0E-06 AGTTATTCATCAAA 14 HMX1_homeodomain_DBD_monomeric_11_1 SELEX - 42034439 42034449 2.0E-06 AGCAATTAAGA 11 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 42033441 42033454 1.0E-06 AAAAACAATAAGCA 14 V_HOXA9_01_M01351 TRANSFAC - 42034435 42034451 9.0E-06 GCAGCAATTAAGATATA 17 V_DBX1_01_M01483 TRANSFAC - 42034403 42034419 3.0E-06 TAAGAAATTACTATTTA 17 V_POU3F3_01_M03090 TRANSFAC - 42034426 42034442 4.0E-06 AAGATATACATATTATG 17 V_EVI1_05_M00082 TRANSFAC - 42032684 42032694 5.0E-06 TGATAAGAAAA 11 V_GATA1_Q6_M02004 TRANSFAC - 42032685 42032699 2.0E-06 TTTACTGATAAGAAA 15 V_GABPA_02_M02074 TRANSFAC + 42033010 42033019 8.0E-06 AACGGAAATA 10 V_MAFK_03_M02776 TRANSFAC - 42034367 42034381 6.0E-06 CAATATTTCTGACTA 15 V_ALX4_01_M00619 TRANSFAC + 42032753 42032765 4.0E-06 CCTGACGATAATC 13 V_GATA2_02_M00348 TRANSFAC - 42032687 42032696 5.0E-06 ACTGATAAGA 10 V_NF1_Q6_01_M00806 TRANSFAC + 42034440 42034456 1.0E-05 CTTAATTGCTGCCAAGA 17 V_HMGIY_Q3_M01010 TRANSFAC + 42034406 42034420 3.0E-06 ATAGTAATTTCTTAA 15 V_COE1_Q6_M01871 TRANSFAC - 42031217 42031230 4.0E-06 TCCCAAGGGGACTT 14 V_POU5F1_02_M02245 TRANSFAC + 42033445 42033459 5.0E-06 TATTGTTTTTCAAAG 15 V_POU5F1_02_M02245 TRANSFAC - 42033860 42033874 7.0E-06 CTTTGAAATTGAAAA 15 V_SOX5_01_M00042 TRANSFAC - 42033444 42033453 9.0E-06 AAAACAATAA 10 V_SP1_Q6_01_M00931 TRANSFAC - 42031617 42031626 4.0E-06 GGGGCGGGGC 10 V_OCT1_Q5_01_M00930 TRANSFAC - 42033139 42033149 5.0E-06 AGATTTTCATA 11 V_OCTAMER_01_M01324 TRANSFAC - 42034426 42034442 4.0E-06 AAGATATACATATTATG 17 V_ISL2_01_M01328 TRANSFAC - 42033841 42033856 2.0E-06 ACCTATTCATTAAGAA 16 V_IRF_Q6_01_M00972 TRANSFAC - 42033860 42033870 4.0E-06 GAAATTGAAAA 11 V_SRY_02_M00160 TRANSFAC - 42033443 42033454 1.0E-06 AAAAACAATAAG 12 V_IRF2_Q6_M01882 TRANSFAC - 42033857 42033872 1.0E-06 TTGAAATTGAAAATGA 16 V_HNF4_Q6_M00967 TRANSFAC - 42033831 42033839 2.0E-06 AAAGTCCAA 9 V_HOXA4_01_M01370 TRANSFAC + 42033839 42033855 1.0E-05 TGTTCTTAATGAATAGG 17 V_POU1F1_Q6_M00744 TRANSFAC - 42033015 42033024 2.0E-06 ATGAATATTT 10 V_HOXC4_01_M01369 TRANSFAC - 42033839 42033855 4.0E-06 CCTATTCATTAAGAACA 17 V_EAR2_Q2_M01728 TRANSFAC + 42033832 42033845 9.0E-06 TGGACTTTGTTCTT 14 V_MAF_Q6_M00648 TRANSFAC - 42032074 42032089 4.0E-06 TGGAGGGAAGGTGGGA 16 V_GATA_C_M00203 TRANSFAC - 42032684 42032694 5.0E-06 TGATAAGAAAA 11 V_HNF4A_03_M02220 TRANSFAC - 42033832 42033844 6.0E-06 AGAACAAAGTCCA 13 V_OCT_C_M00210 TRANSFAC - 42033138 42033150 9.0E-06 AAGATTTTCATAA 13 V_NKX24_01_M01350 TRANSFAC - 42033161 42033176 7.0E-06 AAAAATACTTGAACTC 16 V_AFP1_Q6_M00616 TRANSFAC - 42034344 42034354 3.0E-06 AAAAACTACAC 11 V_HEN1_01_M00068 TRANSFAC + 42031821 42031842 9.0E-06 GCCGGGCCCAGCTGAGCCGCCT 22 V_PU1_Q4_M01172 TRANSFAC + 42032901 42032919 4.0E-06 TCCCTCCTCTTCTCCTTTC 19 V_BRN2_01_M00145 TRANSFAC - 42033855 42033870 4.0E-06 GAAATTGAAAATGAAC 16 V_HELIOSA_01_M01003 TRANSFAC + 42033671 42033681 6.0E-06 CAAAGGGATAA 11 V_AR_03_M00956 TRANSFAC + 42033824 42033850 1.0E-05 AGAATTTTTGGACTTTGTTCTTAATGA 27 V_AR_03_M00956 TRANSFAC - 42034023 42034049 9.0E-06 TGCTTAGAAAGGAGCTGTTCTTTGCCA 27 V_HNF1_C_M00206 TRANSFAC - 42033066 42033082 5.0E-06 AGTTATTTCATAAATCC 17 V_COMP1_01_M00057 TRANSFAC - 42033438 42033461 7.0E-06 CCCTTTGAAAAACAATAAGCAATT 24 V_SOX13_03_M02797 TRANSFAC - 42033441 42033456 3.0E-06 TGAAAAACAATAAGCA 16 V_SOX7_03_M02807 TRANSFAC - 42033437 42033458 1.0E-06 TTTGAAAAACAATAAGCAATTC 22 V_TCF3_04_M02816 TRANSFAC + 42033863 42033879 9.0E-06 TCAATTTCAAAGCAAAG 17 V_PR_01_M00954 TRANSFAC + 42033824 42033850 9.0E-06 AGAATTTTTGGACTTTGTTCTTAATGA 27 V_OCT1_02_M00136 TRANSFAC + 42033013 42033027 6.0E-06 GGAAATATTCATGAA 15 V_ZFP105_03_M02827 TRANSFAC - 42033444 42033458 5.0E-06 TTTGAAAAACAATAA 15 V_PET1_02_M02072 TRANSFAC + 42033010 42033019 7.0E-06 AACGGAAATA 10 V_HNF4_01_B_M00411 TRANSFAC - 42033831 42033845 6.0E-06 AAGAACAAAGTCCAA 15 V_SOX8_04_M02912 TRANSFAC + 42033017 42033030 0.0E+00 ATATTCATGAAACC 14 V_NKX26_01_M01322 TRANSFAC + 42033814 42033829 8.0E-06 TTTTCCACTTAGAATT 16 V_KROX_Q6_M00982 TRANSFAC - 42031456 42031469 3.0E-06 CTCGCCCCCGCGCC 14 V_KROX_Q6_M00982 TRANSFAC + 42031630 42031643 6.0E-06 CCCGCCTCCGCTCC 14 V_ARID3A_02_M02839 TRANSFAC - 42035790 42035804 2.0E-06 TACAATATCATAATA 15 V_NKX25_02_M00241 TRANSFAC + 42034440 42034447 7.0E-06 CTTAATTG 8 V_IRF_Q6_M00772 TRANSFAC + 42033856 42033870 0.0E+00 TTCATTTTCAATTTC 15 V_HNF1_Q6_01_M01011 TRANSFAC - 42033851 42033871 3.0E-06 TGAAATTGAAAATGAACCTAT 21 V_NKX52_01_M01315 TRANSFAC - 42034436 42034452 2.0E-06 GGCAGCAATTAAGATAT 17 V_REST_01_M01256 TRANSFAC + 42032003 42032024 8.0E-06 GCGGGAACCTGTCCCCGGTCTT 22 V_IRF3_06_M02871 TRANSFAC - 42034033 42034046 8.0E-06 TTAGAAAGGAGCTG 14 V_OCT1_04_M00138 TRANSFAC - 42034393 42034415 1.0E-05 AAATTACTATTTAGATACACACA 23 V_OCT1_08_M01354 TRANSFAC - 42033841 42033856 1.0E-05 ACCTATTCATTAAGAA 16 V_HMX1_02_M01481 TRANSFAC - 42034436 42034452 5.0E-06 GGCAGCAATTAAGATAT 17 V_MEF2_04_M00233 TRANSFAC + 42034393 42034414 4.0E-06 TGTGTGTATCTAAATAGTAATT 22 V_GATA1_09_M02254 TRANSFAC - 42032686 42032696 1.0E-06 ACTGATAAGAA 11 V_BBX_04_M02843 TRANSFAC - 42033875 42033891 0.0E+00 AAAATGTTAACACTTTG 17 V_BBX_04_M02843 TRANSFAC + 42033876 42033892 2.0E-06 AAAGTGTTAACATTTTT 17 V_NCX_02_M01420 TRANSFAC - 42033838 42033854 9.0E-06 CTATTCATTAAGAACAA 17 V_NCX_02_M01420 TRANSFAC - 42034403 42034419 2.0E-06 TAAGAAATTACTATTTA 17 V_HNF4A_Q6_01_M02016 TRANSFAC - 42033829 42033843 1.0E-06 GAACAAAGTCCAAAA 15 V_ISGF3G_03_M02771 TRANSFAC - 42033857 42033871 9.0E-06 TGAAATTGAAAATGA 15 V_SOX11_03_M02795 TRANSFAC - 42033440 42033456 5.0E-06 TGAAAAACAATAAGCAA 17 V_INSM1_01_M02268 TRANSFAC + 42031555 42031566 3.0E-06 TGCCTGGGGGCA 12 V_OCT1_B_M00342 TRANSFAC + 42033139 42033148 9.0E-06 TATGAAAATC 10 V_OCT_Q6_M00795 TRANSFAC - 42033139 42033149 9.0E-06 AGATTTTCATA 11 V_HNF4A_02_M02868 TRANSFAC - 42033828 42033843 1.0E-06 GAACAAAGTCCAAAAA 16 V_NKX32_02_M01482 TRANSFAC + 42033813 42033829 7.0E-06 CTTTTCCACTTAGAATT 17 V_MAF_Q6_01_M00983 TRANSFAC - 42033707 42033717 4.0E-06 TCCTGAGTCAA 11 V_HOXB4_01_M01424 TRANSFAC - 42033839 42033855 8.0E-06 CCTATTCATTAAGAACA 17 V_SP4_Q5_M01273 TRANSFAC + 42031617 42031627 2.0E-06 GCCCCGCCCCG 11 V_SOX15_03_M02799 TRANSFAC - 42033440 42033456 1.0E-06 TGAAAAACAATAAGCAA 17 V_GATA1_05_M00346 TRANSFAC - 42032687 42032696 1.0E-05 ACTGATAAGA 10 V_MTF1_06_M02882 TRANSFAC + 42033068 42033081 1.0E-06 ATTTATGAAATAAC 14 V_NKX25_03_M01414 TRANSFAC + 42033814 42033829 4.0E-06 TTTTCCACTTAGAATT 16 V_TAL1_01_M01591 TRANSFAC + 42032684 42032696 6.0E-06 TTTTCTTATCAGT 13 V_GATA1_04_M00128 TRANSFAC - 42032685 42032697 9.0E-06 TACTGATAAGAAA 13 V_MYCMAX_B_M00322 TRANSFAC + 42031812 42031821 3.0E-06 GCCACGCGCG 10 V_HNF4_Q6_01_M01031 TRANSFAC - 42033831 42033844 2.0E-06 AGAACAAAGTCCAA 14 V_SMAD3_03_M02794 TRANSFAC + 42032853 42032869 7.0E-06 CTCAGCCAGACAGGACT 17 V_DMRT7_01_M01151 TRANSFAC + 42033880 42033893 1.0E-05 TGTTAACATTTTTG 14 V_BDP1_01_M01796 TRANSFAC - 42033424 42033435 6.0E-06 GGATTTGAAACC 12 V_NKX22_01_M00485 TRANSFAC + 42033165 42033174 7.0E-06 TCAAGTATTT 10 V_MYB_Q5_01_M00913 TRANSFAC - 42032319 42032327 4.0E-06 TAACTGACA 9 V_MYB_Q3_M00773 TRANSFAC + 42032317 42032327 0.0E+00 AGTGTCAGTTA 11 V_STAT1STAT1_Q3_M01212 TRANSFAC + 42033866 42033878 3.0E-06 ATTTCAAAGCAAA 13 V_REST_02_M02256 TRANSFAC + 42033687 42033707 9.0E-06 CTCACCACCCTGGTCAGGGTT 21 V_PLZF_02_M01075 TRANSFAC - 42033849 42033877 2.0E-06 TTGCTTTGAAATTGAAAATGAACCTATTC 29 V_PLZF_02_M01075 TRANSFAC + 42034327 42034355 6.0E-06 TTGTCTTTGCTTTAAATGTGTAGTTTTTC 29 V_CEBPB_Q6_M01896 TRANSFAC + 42033070 42033079 2.0E-06 TTATGAAATA 10 V_LEF1TCF1_Q4_M00978 TRANSFAC + 42033835 42033845 2.0E-06 ACTTTGTTCTT 11 V_OCT1_07_M00248 TRANSFAC + 42034435 42034446 9.0E-06 TATATCTTAATT 12 V_IRF1_Q6_01_M01881 TRANSFAC + 42033858 42033871 1.0E-06 CATTTTCAATTTCA 14 V_SOX8_03_M02808 TRANSFAC + 42033440 42033456 8.0E-06 TTGCTTATTGTTTTTCA 17 V_SOX2_01_M02246 TRANSFAC + 42033444 42033458 1.0E-06 TTATTGTTTTTCAAA 15 V_HOXD8_01_M01432 TRANSFAC - 42034403 42034419 4.0E-06 TAAGAAATTACTATTTA 17 V_YY1_01_M00059 TRANSFAC + 42035803 42035819 4.0E-06 TAGGACCATTTAGGAAA 17 V_SOX1_03_M02802 TRANSFAC - 42033842 42033857 3.0E-06 AACCTATTCATTAAGA 16 V_SOX2_Q6_M01272 TRANSFAC + 42033440 42033455 5.0E-06 TTGCTTATTGTTTTTC 16 V_IRF1_01_M00062 TRANSFAC - 42033806 42033818 4.0E-06 GAAAAGTAACAGT 13 V_SOX12_03_M02796 TRANSFAC + 42033444 42033457 2.0E-06 TTATTGTTTTTCAA 14 V_PIT1_Q6_M00802 TRANSFAC - 42033880 42033897 1.0E-06 ATTTCAAAAATGTTAACA 18 V_SRY_05_M02917 TRANSFAC - 42033441 42033457 1.0E-06 TTGAAAAACAATAAGCA 17 V_GATA5_03_M02756 TRANSFAC - 42032683 42032699 0.0E+00 TTTACTGATAAGAAAAC 17 V_HNF4_01_M00134 TRANSFAC - 42033829 42033847 2.0E-06 TTAAGAACAAAGTCCAAAA 19 V_HMX3_02_M01413 TRANSFAC - 42034436 42034452 2.0E-06 GGCAGCAATTAAGATAT 17 V_GATA6_04_M02757 TRANSFAC - 42032683 42032699 2.0E-06 TTTACTGATAAGAAAAC 17 V_HNF1A_01_M02162 TRANSFAC + 42033956 42033969 8.0E-06 AGTTATTCATCAAA 14 V_RNF96_01_M01199 TRANSFAC - 42031276 42031285 7.0E-06 GCCCGCGGCC 10 V_PBX1_04_M01357 TRANSFAC + 42033958 42033974 5.0E-06 TTATTCATCAAATACAG 17 V_ESR2_01_M02377 TRANSFAC + 42033270 42033287 2.0E-06 CAGGGTCTCTTTGTCCTG 18 V_NF1_Q6_M00193 TRANSFAC - 42034439 42034456 6.0E-06 TCTTGGCAGCAATTAAGA 18 V_NANOG_02_M01247 TRANSFAC - 42033439 42033458 0.0E+00 TTTGAAAAACAATAAGCAAT 20 V_OCT4_01_M01125 TRANSFAC + 42033445 42033459 5.0E-06 TATTGTTTTTCAAAG 15 V_OCT4_01_M01125 TRANSFAC - 42033860 42033874 5.0E-06 CTTTGAAATTGAAAA 15 V_PPARG_01_M00512 TRANSFAC + 42033778 42033798 5.0E-06 TTTGAGGTGAAAGGGGATGGA 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.