Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C5orf64 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 285668 chromosome 5 open reading frame 64 chr5 + 60928635 - 60934135 60933635 Transcription Factor Binding Sites   Download all TFBS in the C5orf64 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 60936514 60936531 8.0E-06 TCTGAAAATAATGATATC 18 TBX21_TBX_full_dimeric_16_1 SELEX + 60936589 60936604 6.0E-06 AGTGAGTCATAACACC 16 Sox1_HMG_DBD_dimeric_14_1 SELEX - 60928723 60928736 1.0E-05 TGACTTCATAGTCA 14 MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 60936511 60936528 8.0E-06 ATCATTATTTTCAGATTA 18 SOX10_HMG_full_dimeric_14_1 SELEX + 60928723 60928736 6.0E-06 TGACTATGAAGTCA 14 POU2F1_POU_DBD_dimeric_14_1 SELEX - 60928676 60928689 1.0E-05 CAAGAAAATGCAAA 14 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 60936511 60936527 1.0E-06 TCATTATTTTCAGATTA 17 GRHL1_CP2_full_dimeric_12_1 SELEX - 60936643 60936654 5.0E-06 GAAACCAGTTTA 12 EWSR1-FLI1_MA0149.1 JASPAR + 60933656 60933673 0.0E+00 GGCAGGAAGGAAGCCAAG 18 SOX9_HMG_DBD_monomeric_9_1 SELEX + 60936567 60936575 4.0E-06 AAACAATAG 9 Tcfap2a_TFAP_DBD_dimeric_13_1 SELEX + 60933612 60933624 0.0E+00 TGCCCTCAGGGCA 13 Tcfap2a_TFAP_DBD_dimeric_13_1 SELEX - 60933612 60933624 0.0E+00 TGCCCTGAGGGCA 13 SOX8_HMG_DBD_dimeric_14_1 SELEX + 60928723 60928736 4.0E-06 TGACTATGAAGTCA 14 IRF7_IRF_DBD_trimeric_17_1 SELEX - 60933564 60933580 1.0E-05 AAAAAAAAATTCCTTCC 17 TFAP2C_TFAP_full_dimeric_13_1 SELEX + 60933612 60933624 0.0E+00 TGCCCTCAGGGCA 13 TFAP2C_TFAP_full_dimeric_13_1 SELEX - 60933612 60933624 0.0E+00 TGCCCTGAGGGCA 13 POU6F2_POU_DBD_dimeric_16_1 SELEX - 60936235 60936250 7.0E-06 ATCATGAGCAAATAAA 16 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 60928676 60928689 4.0E-06 CAAGAAAATGCAAA 14 POU2F3_POU_DBD_dimeric_12_1 SELEX - 60928677 60928688 7.0E-06 AAGAAAATGCAA 12 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 60936516 60936529 7.0E-06 TGAAAATAATGATA 14 SOX9_HMG_full_dimeric_16_3 SELEX + 60928722 60928737 3.0E-06 TTGACTATGAAGTCAT 16 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX + 60933529 60933545 5.0E-06 GAGAACACAATGCTCCC 17 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX - 60933529 60933545 9.0E-06 GGGAGCATTGTGTTCTC 17 TFCP2_CP2_full_dimeric_10_1 SELEX + 60936644 60936653 4.0E-06 AAACTGGTTT 10 TFCP2_CP2_full_dimeric_10_1 SELEX - 60936644 60936653 3.0E-06 AAACCAGTTT 10 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 60933517 60933527 8.0E-06 CTAAATAATCA 11 TFAP2A_TFAP_DBD_dimeric_13_1 SELEX + 60933612 60933624 0.0E+00 TGCCCTCAGGGCA 13 TFAP2A_TFAP_DBD_dimeric_13_1 SELEX - 60933612 60933624 0.0E+00 TGCCCTGAGGGCA 13 Msx3_homeodomain_DBD_dimeric_18_1 SELEX - 60936511 60936528 7.0E-06 ATCATTATTTTCAGATTA 18 POU1F1_POU_DBD_monomeric_17_1 SELEX - 60934334 60934350 7.0E-06 TACATGAATAATACTTC 17 Foxd3_MA0041.1 JASPAR + 60933569 60933580 7.0E-06 GAATTTTTTTTT 12 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 60936516 60936529 3.0E-06 TGAAAATAATGATA 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 60936516 60936529 5.0E-06 TATCATTATTTTCA 14 MTF1_C2H2_DBD_monomeric_14_1 SELEX - 60936697 60936710 7.0E-06 TGTGCAATCGGCAC 14 TFAP2B_TFAP_DBD_dimeric_13_1 SELEX + 60933612 60933624 0.0E+00 TGCCCTCAGGGCA 13 TFAP2B_TFAP_DBD_dimeric_13_1 SELEX - 60933612 60933624 0.0E+00 TGCCCTGAGGGCA 13 JDP2_bZIP_full_dimeric_9_1 SELEX - 60936590 60936598 7.0E-06 ATGACTCAC 9 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 60928677 60928688 7.0E-06 AAGAAAATGCAA 12 GRHL1_CP2_DBD_dimeric_10_1 SELEX - 60936644 60936653 5.0E-06 AAACCAGTTT 10 CPEB1_RRM_full_monomeric_8_1 SELEX - 60936685 60936692 4.0E-06 AATAAAAA 8 SOX9_MA0077.1 JASPAR + 60936567 60936575 7.0E-06 AAACAATAG 9 SPI1_ETS_full_monomeric_14_1 SELEX + 60934326 60934339 8.0E-06 AAATGGGGGAAGTA 14 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 60936511 60936528 7.0E-06 ATCATTATTTTCAGATTA 18 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 60936559 60936571 4.0E-06 GAAAAGAAAAACA 13 NR3C1_nuclearreceptor_DBD_dimeric_17_1 SELEX + 60933529 60933545 7.0E-06 GAGAACACAATGCTCCC 17 NR3C1_nuclearreceptor_DBD_dimeric_17_1 SELEX - 60933529 60933545 8.0E-06 GGGAGCATTGTGTTCTC 17 Irx3_homeodomain_DBD_dimeric_12_1 SELEX - 60934340 60934351 2.0E-06 TTACATGAATAA 12 AR_nuclearreceptor_full_dimeric_17_1 SELEX - 60933529 60933545 9.0E-06 GGGAGCATTGTGTTCTC 17 V_SPI1_01_M01203 TRANSFAC + 60934326 60934342 2.0E-06 AAATGGGGGAAGTATTA 17 V_POU3F3_01_M03090 TRANSFAC - 60934336 60934352 9.0E-06 ATTACATGAATAATACT 17 V_AR_02_M00953 TRANSFAC - 60933524 60933550 3.0E-06 TGTGAGGGAGCATTGTGTTCTCTCTAA 27 V_ALX4_01_M00619 TRANSFAC + 60936514 60936526 8.0E-06 TCTGAAAATAATG 13 TAL1_TCF3_MA0091.1 JASPAR + 60928698 60928709 2.0E-06 GAACCATCTGTT 12 V_NRSF_Q4_M01028 TRANSFAC + 60933589 60933607 2.0E-06 TTCCAGTCCCTGGAGCTGC 19 V_NF1_Q6_01_M00806 TRANSFAC - 60936731 60936747 6.0E-06 TTGAAGGAGAGCCAATA 17 V_SOX30_03_M02804 TRANSFAC + 60936564 60936579 3.0E-06 GAAAAACAATAGATGT 16 V_HMGIY_Q3_M01010 TRANSFAC + 60928676 60928690 5.0E-06 TTTGCATTTTCTTGG 15 V_HMGIY_Q3_M01010 TRANSFAC + 60933566 60933580 2.0E-06 AAGGAATTTTTTTTT 15 V_FOXD3_01_M00130 TRANSFAC + 60933569 60933580 9.0E-06 GAATTTTTTTTT 12 V_FOXD3_01_M00130 TRANSFAC + 60933570 60933581 9.0E-06 AATTTTTTTTTT 12 V_BCL6_01_M01183 TRANSFAC - 60936776 60936791 6.0E-06 TTACAAGGAATCCTTT 16 V_AR_Q6_01_M01996 TRANSFAC - 60933529 60933543 1.0E-06 GAGCATTGTGTTCTC 15 V_OCT1_Q5_01_M00930 TRANSFAC - 60928806 60928816 5.0E-06 TACTTTGCATT 11 V_OCTAMER_01_M01324 TRANSFAC - 60934336 60934352 9.0E-06 ATTACATGAATAATACT 17 V_SRY_02_M00160 TRANSFAC + 60936565 60936576 0.0E+00 AAAAACAATAGA 12 V_POU1F1_Q6_M00744 TRANSFAC - 60934338 60934347 1.0E-06 ATGAATAATA 10 V_HNF3_Q6_01_M01012 TRANSFAC + 60936232 60936249 1.0E-06 AACTTTATTTGCTCATGA 18 V_BRN2_01_M00145 TRANSFAC - 60934335 60934350 8.0E-06 TACATGAATAATACTT 16 V_TCFAP2E_04_M02926 TRANSFAC - 60933570 60933583 6.0E-06 TTAAAAAAAAAATT 14 V_TCFAP2E_04_M02926 TRANSFAC - 60933573 60933586 1.0E-06 GGCTTAAAAAAAAA 14 V_AR_03_M00956 TRANSFAC - 60933524 60933550 0.0E+00 TGTGAGGGAGCATTGTGTTCTCTCTAA 27 V_ELF4_04_M02850 TRANSFAC - 60933568 60933584 0.0E+00 CTTAAAAAAAAAATTCC 17 V_ELF4_04_M02850 TRANSFAC - 60933569 60933585 0.0E+00 GCTTAAAAAAAAAATTC 17 V_ELF4_04_M02850 TRANSFAC - 60933570 60933586 3.0E-06 GGCTTAAAAAAAAAATT 17 V_BACH1_01_M00495 TRANSFAC + 60936587 60936601 9.0E-06 TCAGTGAGTCATAAC 15 V_SOX7_03_M02807 TRANSFAC + 60936561 60936582 0.0E+00 AAAGAAAAACAATAGATGTGAA 22 V_PR_01_M00954 TRANSFAC - 60933524 60933550 0.0E+00 TGTGAGGGAGCATTGTGTTCTCTCTAA 27 V_OCT1_02_M00136 TRANSFAC - 60928674 60928688 1.0E-05 AAGAAAATGCAAAGA 15 V_OCT1_02_M00136 TRANSFAC + 60934336 60934350 1.0E-05 AGTATTATTCATGTA 15 V_ZFP105_03_M02827 TRANSFAC - 60933569 60933583 9.0E-06 TTAAAAAAAAAATTC 15 V_ZFP105_03_M02827 TRANSFAC - 60933570 60933584 4.0E-06 CTTAAAAAAAAAATT 15 V_ZFP105_03_M02827 TRANSFAC + 60936561 60936575 7.0E-06 AAAGAAAAACAATAG 15 V_OCT1_03_M00137 TRANSFAC + 60936518 60936530 1.0E-05 AAAATAATGATAT 13 V_SIX1_01_M01313 TRANSFAC - 60936520 60936536 9.0E-06 TTATAGATATCATTATT 17 V_GATA3_05_M02859 TRANSFAC - 60936517 60936538 8.0E-06 CCTTATAGATATCATTATTTTC 22 V_SOX8_04_M02912 TRANSFAC + 60934340 60934353 1.0E-06 TTATTCATGTAATG 14 V_IRX4_01_M01410 TRANSFAC - 60934338 60934354 4.0E-06 ACATTACATGAATAATA 17 V_OCT1_05_M00161 TRANSFAC - 60928804 60928817 3.0E-06 GTACTTTGCATTTC 14 V_SOX18_03_M02801 TRANSFAC - 60936514 60936529 6.0E-06 TATCATTATTTTCAGA 16 V_JUNDM2_04_M02876 TRANSFAC + 60936586 60936601 7.0E-06 TTCAGTGAGTCATAAC 16 V_JUNDM2_04_M02876 TRANSFAC - 60936587 60936602 4.0E-06 TGTTATGACTCACTGA 16 V_OCT1_04_M00138 TRANSFAC - 60936787 60936809 8.0E-06 GTTTAGACATGAAAAAGCTTACA 23 V_GR_01_M00955 TRANSFAC - 60933524 60933550 0.0E+00 TGTGAGGGAGCATTGTGTTCTCTCTAA 27 V_TAL1BETAE47_01_M00065 TRANSFAC - 60928697 60928712 1.0E-06 CTAAACAGATGGTTCC 16 V_GR_Q6_M00192 TRANSFAC - 60933528 60933546 1.0E-06 AGGGAGCATTGTGTTCTCT 19 V_GATA5_04_M02860 TRANSFAC - 60936521 60936537 2.0E-06 CTTATAGATATCATTAT 17 V_AP1_01_M00517 TRANSFAC + 60936588 60936600 2.0E-06 CAGTGAGTCATAA 13 V_IRX3_01_M01318 TRANSFAC + 60934339 60934355 1.0E-05 ATTATTCATGTAATGTG 17 V_SOX11_03_M02795 TRANSFAC + 60936563 60936579 2.0E-06 AGAAAAACAATAGATGT 17 V_SOX9_B1_M00410 TRANSFAC + 60936564 60936577 1.0E-06 GAAAAACAATAGAT 14 V_IRX5_01_M01472 TRANSFAC - 60934338 60934354 7.0E-06 ACATTACATGAATAATA 17 V_SOX17_04_M02904 TRANSFAC + 60934336 60934352 2.0E-06 AGTATTATTCATGTAAT 17 V_SOX17_04_M02904 TRANSFAC + 60936630 60936646 3.0E-06 AATCAGATTCAGATAAA 17 V_ZFP691_04_M02937 TRANSFAC - 60933643 60933659 7.0E-06 TGCCAGACTCCTCCCAA 17 V_TAL1BETAITF2_01_M00070 TRANSFAC - 60928697 60928712 0.0E+00 CTAAACAGATGGTTCC 16 V_GR_Q6_02_M01836 TRANSFAC - 60933528 60933540 3.0E-06 CATTGTGTTCTCT 13 V_IRX3_02_M01485 TRANSFAC - 60934338 60934354 9.0E-06 ACATTACATGAATAATA 17 V_AP1_Q4_01_M00926 TRANSFAC + 60936591 60936598 1.0E-05 TGAGTCAT 8 V_VJUN_01_M00036 TRANSFAC + 60928725 60928740 7.0E-06 ACTATGAAGTCATTTA 16 V_SOX15_03_M02799 TRANSFAC + 60936563 60936579 1.0E-06 AGAAAAACAATAGATGT 17 V_POU5F1_01_M01307 TRANSFAC - 60928674 60928683 6.0E-06 AATGCAAAGA 10 V_FOXL1_02_M02857 TRANSFAC + 60936561 60936576 9.0E-06 AAAGAAAAACAATAGA 16 V_TAL1ALPHAE47_01_M00066 TRANSFAC - 60928697 60928712 5.0E-06 CTAAACAGATGGTTCC 16 V_OCT1_Q6_M00195 TRANSFAC - 60928672 60928686 4.0E-06 GAAAATGCAAAGACT 15 V_OCT1_Q6_M00195 TRANSFAC + 60928803 60928817 4.0E-06 TGAAATGCAAAGTAC 15 V_NKX3A_02_M01383 TRANSFAC - 60928807 60928823 3.0E-06 TTGAAAGTACTTTGCAT 17 V_NKX3A_02_M01383 TRANSFAC + 60928808 60928824 3.0E-06 TGCAAAGTACTTTCAAG 17 V_NKX61_02_M01469 TRANSFAC + 60936516 60936531 6.0E-06 TGAAAATAATGATATC 16 V_FRA1_Q5_M01267 TRANSFAC + 60936591 60936598 1.0E-05 TGAGTCAT 8 V_SOX21_04_M02907 TRANSFAC - 60936562 60936578 2.0E-06 CATCTATTGTTTTTCTT 17 V_SOX21_04_M02907 TRANSFAC + 60936751 60936767 9.0E-06 ACTCAATTGTGCAGCAG 17 V_IRX2_01_M01405 TRANSFAC - 60934338 60934354 8.0E-06 ACATTACATGAATAATA 17 V_SOX8_03_M02808 TRANSFAC - 60936563 60936579 1.0E-06 ACATCTATTGTTTTTCT 17 V_SRF_06_M02916 TRANSFAC - 60933568 60933584 0.0E+00 CTTAAAAAAAAAATTCC 17 V_SRF_06_M02916 TRANSFAC - 60933569 60933585 0.0E+00 GCTTAAAAAAAAAATTC 17 V_SRF_06_M02916 TRANSFAC - 60933570 60933586 3.0E-06 GGCTTAAAAAAAAAATT 17 V_SRF_06_M02916 TRANSFAC + 60936558 60936574 6.0E-06 GGAAAAGAAAAACAATA 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 60933656 60933673 0.0E+00 GGCAGGAAGGAAGCCAAG 18 V_SIX6_01_M01345 TRANSFAC - 60936520 60936536 2.0E-06 TTATAGATATCATTATT 17 V_SOX2_Q6_M01272 TRANSFAC - 60936564 60936579 2.0E-06 ACATCTATTGTTTTTC 16 V_PR_02_M00957 TRANSFAC - 60933524 60933550 2.0E-06 TGTGAGGGAGCATTGTGTTCTCTCTAA 27 V_SRY_05_M02917 TRANSFAC + 60936562 60936578 0.0E+00 AAGAAAAACAATAGATG 17 V_TAACC_B_M00331 TRANSFAC - 60928713 60928735 6.0E-06 GACTTCATAGTCAAAACCCAAAC 23 V_TCF3_05_M02920 TRANSFAC - 60933573 60933587 2.0E-06 TGGCTTAAAAAAAAA 15 V_DEC_Q1_M00997 TRANSFAC - 60933543 60933555 6.0E-06 CCCCATGTGAGGG 13 V_SMAD1_01_M01590 TRANSFAC + 60936565 60936576 1.0E-06 AAAAACAATAGA 12 V_NANOG_02_M01247 TRANSFAC + 60936561 60936580 1.0E-06 AAAGAAAAACAATAGATGTG 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.