Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

DPH3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 285381 diphthamide biosynthesis 3 chr3 - 16305996 - 16311496 16306496 Transcription Factor Binding Sites   Download all TFBS in the DPH3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 16309749 16309767 0.0E+00 TTACCAGTAGGTGGCACTC 19 SOX21_HMG_DBD_dimeric_15_1 SELEX - 16306373 16306387 4.0E-06 GACCATGGCAGTGTT 15 THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX + 16306068 16306087 0.0E+00 CTGACCTAATCTAAGGCCAG 20 THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX - 16306068 16306087 1.0E-06 CTGGCCTTAGATTAGGTCAG 20 SOX4_HMG_DBD_dimeric_16_1 SELEX - 16306373 16306388 5.0E-06 TGACCATGGCAGTGTT 16 FLI1_ETS_full_monomeric_10_1 SELEX - 16308439 16308448 6.0E-06 ACCGGAAATC 10 SRY_HMG_DBD_dimeric_15_1 SELEX + 16306373 16306387 7.0E-06 AACACTGCCATGGTC 15 ERG_ETS_full_monomeric_10_1 SELEX - 16308439 16308448 7.0E-06 ACCGGAAATC 10 ETV3_ETS_DBD_monomeric_10_1 SELEX - 16308439 16308448 9.0E-06 ACCGGAAATC 10 SOX2_HMG_full_dimeric_17_1 SELEX + 16306372 16306388 6.0E-06 AAACACTGCCATGGTCA 17 FOXF2_MA0030.1 JASPAR - 16308469 16308482 6.0E-06 TAGTGGTAAACAAG 14 FEV_ETS_DBD_monomeric_10_1 SELEX - 16308439 16308448 8.0E-06 ACCGGAAATC 10 SOX8_HMG_full_dimeric_15_1 SELEX - 16306373 16306387 1.0E-06 GACCATGGCAGTGTT 15 Esrrb_MA0141.1 JASPAR - 16306965 16306976 1.0E-06 GGCTCAAGGTCA 12 FOXO1_forkhead_DBD_monomeric_8_1 SELEX - 16308470 16308477 7.0E-06 GTAAACAA 8 Sox17_HMG_DBD_dimeric_15_1 SELEX + 16306373 16306387 1.0E-05 AACACTGCCATGGTC 15 ETV2_ETS_DBD_monomeric_11_1 SELEX - 16308439 16308449 8.0E-06 GACCGGAAATC 11 E2F8_E2F_DBD_dimeric_12_1 SELEX + 16308441 16308452 1.0E-05 TTTCCGGTCAAA 12 ETS1_ETS_full_monomeric_10_1 SELEX - 16308439 16308448 5.0E-06 ACCGGAAATC 10 ELK4_ETS_DBD_monomeric_10_1 SELEX - 16308439 16308448 8.0E-06 ACCGGAAATC 10 ELK4_MA0076.1 JASPAR - 16308440 16308448 7.0E-06 ACCGGAAAT 9 SOX18_HMG_full_dimeric_15_1 SELEX + 16306373 16306387 7.0E-06 AACACTGCCATGGTC 15 SOX18_HMG_full_dimeric_15_1 SELEX - 16306373 16306387 2.0E-06 GACCATGGCAGTGTT 15 CTCF_C2H2_full_monomeric_17_1 SELEX - 16309750 16309766 0.0E+00 AGTGCCACCTACTGGTA 17 SOX7_HMG_full_dimeric_16_1 SELEX + 16309734 16309749 1.0E-05 AAAAATGTCCTTTATT 16 SOX7_HMG_full_dimeric_17_1 SELEX - 16306372 16306388 4.0E-06 TGACCATGGCAGTGTTT 17 ERF_ETS_DBD_monomeric_10_1 SELEX - 16308439 16308448 9.0E-06 ACCGGAAATC 10 FOXO3_forkhead_full_monomeric_8_1 SELEX - 16308470 16308477 7.0E-06 GTAAACAA 8 Sox3_HMG_DBD_dimeric_17_1 SELEX - 16306372 16306388 5.0E-06 TGACCATGGCAGTGTTT 17 Sox1_HMG_DBD_dimeric_15_1 SELEX - 16306373 16306387 7.0E-06 GACCATGGCAGTGTT 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 16308321 16308333 4.0E-06 GAATAAATAAAAT 13 SOX9_HMG_full_dimeric_17_1 SELEX - 16306372 16306388 3.0E-06 TGACCATGGCAGTGTTT 17 V_ERG_03_M02062 TRANSFAC - 16308439 16308448 9.0E-06 ACCGGAAATC 10 V_FREAC7_01_M00293 TRANSFAC - 16308321 16308336 2.0E-06 GAGGAATAAATAAAAT 16 V_CDX2_Q5_01_M01659 TRANSFAC + 16309729 16309739 1.0E-05 TTTATAAAAAT 11 V_APOLYA_B_M00310 TRANSFAC - 16309735 16309749 1.0E-06 AATAAAGGACATTTT 15 V_GABPA_02_M02074 TRANSFAC - 16308439 16308448 5.0E-06 ACCGGAAATC 10 V_FOXA2_04_M02749 TRANSFAC - 16309741 16309757 3.0E-06 TACTGGTAAATAAAGGA 17 V_SREBP2_Q6_M01177 TRANSFAC - 16308348 16308359 2.0E-06 ACGCCACCTCAC 12 V_FOXD3_01_M00130 TRANSFAC + 16308322 16308333 6.0E-06 TTTTATTTATTC 12 V_NKX29_01_M01352 TRANSFAC + 16309707 16309723 6.0E-06 TGGAAAGCACTTTAAAC 17 V_ERR3_Q2_01_M02094 TRANSFAC - 16306963 16306975 0.0E+00 GCTCAAGGTCACT 13 V_LRH1_Q5_01_M02098 TRANSFAC - 16306965 16306975 2.0E-06 GCTCAAGGTCA 11 V_HOXA13_02_M01297 TRANSFAC - 16308321 16308329 4.0E-06 AAATAAAAT 9 V_HOXA13_02_M01297 TRANSFAC + 16309789 16309797 4.0E-06 AAATAAAAT 9 V_SATB1_Q3_M01723 TRANSFAC - 16309737 16309752 3.0E-06 GTAAATAAAGGACATT 16 V_MEF2_02_M00231 TRANSFAC - 16309676 16309697 2.0E-06 GCCAGTCCTTTAAATAAAATAT 22 V_FOXO3A_Q1_M01137 TRANSFAC - 16308321 16308332 2.0E-06 AATAAATAAAAT 12 V_FOXO3A_Q1_M01137 TRANSFAC - 16308467 16308478 6.0E-06 GGTAAACAAGTA 12 V_SP1_02_M01303 TRANSFAC + 16306125 16306135 5.0E-06 GGGGTGGGGGG 11 V_SP1_02_M01303 TRANSFAC + 16306877 16306887 5.0E-06 GGGGTGGGGAG 11 V_HEN1_01_M00068 TRANSFAC - 16308411 16308432 3.0E-06 ACTGGGCTCAGGTGTGACTCCT 22 V_HOXD13_01_M01404 TRANSFAC - 16309675 16309690 8.0E-06 CTTTAAATAAAATATA 16 V_HOXD13_01_M01404 TRANSFAC - 16309724 16309739 0.0E+00 ATTTTTATAAAATTCT 16 V_HOXD13_01_M01404 TRANSFAC + 16309726 16309741 1.0E-06 AATTTTATAAAAATGT 16 V_BCL6_02_M01185 TRANSFAC - 16309702 16309715 3.0E-06 TGCTTTCCAAAGCT 14 V_HMGA2_01_M01300 TRANSFAC + 16309735 16309749 7.0E-06 AAAATGTCCTTTATT 15 V_ELF4_04_M02850 TRANSFAC - 16309674 16309690 1.0E-06 CTTTAAATAAAATATAA 17 V_ELF4_04_M02850 TRANSFAC + 16309782 16309798 5.0E-06 TTTCACAAAATAAAATC 17 V_FREAC3_01_M00291 TRANSFAC - 16309742 16309757 5.0E-06 TACTGGTAAATAAAGG 16 V_ZFP105_03_M02827 TRANSFAC - 16308318 16308332 8.0E-06 AATAAATAAAATGTC 15 V_GFI1_01_M00250 TRANSFAC + 16309787 16309810 8.0E-06 CAAAATAAAATCTTAGGATTTTAA 24 V_ZBED6_01_M01598 TRANSFAC - 16305937 16305948 2.0E-06 GAAGCTCGCCTG 12 V_IRF2_01_M00063 TRANSFAC + 16306607 16306619 6.0E-06 GAAGACTGAAAGC 13 V_ERG_01_M01752 TRANSFAC - 16308440 16308448 7.0E-06 ACCGGAAAT 9 V_GABPA_01_M02039 TRANSFAC - 16308439 16308448 6.0E-06 ACCGGAAATC 10 V_MEF2_03_M00232 TRANSFAC - 16309676 16309697 2.0E-06 GCCAGTCCTTTAAATAAAATAT 22 V_E4F1_Q6_01_M02091 TRANSFAC - 16306694 16306703 5.0E-06 GTGACGTAGC 10 V_ASCL2_03_M02737 TRANSFAC - 16306832 16306848 7.0E-06 CCTAGCACCTGCTGCAG 17 V_YY1_Q6_02_M01035 TRANSFAC - 16308370 16308380 7.0E-06 CTTGCCATTTT 11 V_MEF2_04_M00233 TRANSFAC - 16309676 16309697 2.0E-06 GCCAGTCCTTTAAATAAAATAT 22 V_MEF2_04_M00233 TRANSFAC + 16309709 16309730 5.0E-06 GAAAGCACTTTAAACAGAATTT 22 V_ELK1_02_M00025 TRANSFAC - 16308438 16308451 6.0E-06 TTGACCGGAAATCA 14 V_TAXCREB_02_M00115 TRANSFAC + 16306522 16306536 9.0E-06 ATGACGCAACTCCGC 15 V_ARID3A_04_M02735 TRANSFAC - 16309676 16309692 1.0E-06 TCCTTTAAATAAAATAT 17 V_SMAD4_Q6_M00733 TRANSFAC - 16306577 16306591 9.0E-06 CTAGTTCAGCCATCT 15 V_TBP_06_M02814 TRANSFAC - 16309723 16309738 4.0E-06 TTTTTATAAAATTCTG 16 V_TBP_06_M02814 TRANSFAC + 16309725 16309740 2.0E-06 GAATTTTATAAAAATG 16 V_TBP_06_M02814 TRANSFAC - 16309725 16309740 2.0E-06 CATTTTTATAAAATTC 16 V_TBP_06_M02814 TRANSFAC + 16309727 16309742 7.0E-06 ATTTTATAAAAATGTC 16 V_CTCF_02_M01259 TRANSFAC + 16309746 16309765 0.0E+00 TATTTACCAGTAGGTGGCAC 20 V_OCT4_02_M01124 TRANSFAC - 16309714 16309728 6.0E-06 ATTCTGTTTAAAGTG 15 V_CTCF_01_M01200 TRANSFAC + 16309748 16309767 0.0E+00 TTTACCAGTAGGTGGCACTC 20 V_GATA4_Q3_M00632 TRANSFAC + 16308400 16308411 1.0E-05 AGAAAGCAGGAA 12 V_MTF1_06_M02882 TRANSFAC + 16309727 16309740 9.0E-06 ATTTTATAAAAATG 14 V_FOXL1_02_M02857 TRANSFAC + 16309783 16309798 4.0E-06 TTCACAAAATAAAATC 16 V_HEN1_02_M00058 TRANSFAC - 16308411 16308432 7.0E-06 ACTGGGCTCAGGTGTGACTCCT 22 V_LUN1_01_M00480 TRANSFAC + 16308301 16308317 0.0E+00 TGCCAGGTACTTTGGTA 17 V_NKX3A_02_M01383 TRANSFAC + 16309707 16309723 4.0E-06 TGGAAAGCACTTTAAAC 17 V_ERR1_Q2_M00511 TRANSFAC - 16306963 16306976 7.0E-06 GGCTCAAGGTCACT 14 V_ERR1_Q2_M00511 TRANSFAC - 16309737 16309750 6.0E-06 AAATAAAGGACATT 14 V_TCF7_04_M02921 TRANSFAC - 16309726 16309740 1.0E-05 CATTTTTATAAAATT 15 V_LMX1B_01_M01363 TRANSFAC + 16309676 16309692 9.0E-06 ATATTTTATTTAAAGGA 17 V_ZFP161_04_M02933 TRANSFAC - 16306533 16306546 1.0E-06 GCCGCGCAGGGCGG 14 V_FPM315_01_M01587 TRANSFAC + 16306138 16306149 6.0E-06 GCGGGAGGAGGA 12 V_FOXO3_01_M00477 TRANSFAC + 16308467 16308480 4.0E-06 TACTTGTTTACCAC 14 V_IRF6_04_M02874 TRANSFAC - 16306097 16306111 3.0E-06 AGCTCTCTCGGTAGG 15 V_OSR1_04_M02888 TRANSFAC + 16308461 16308476 8.0E-06 GTATACTACTTGTTTA 16 V_SRF_06_M02916 TRANSFAC - 16309674 16309690 1.0E-06 CTTTAAATAAAATATAA 17 V_E4F1_Q6_M00694 TRANSFAC + 16306694 16306703 2.0E-06 GCTACGTCAC 10 V_HNF3B_Q6_M02014 TRANSFAC + 16308324 16308332 1.0E-05 TTATTTATT 9 V_MEF2_01_M00006 TRANSFAC + 16309805 16309820 2.0E-06 TTTTAAAGAGAACTCC 16 V_FOXO4_01_M00472 TRANSFAC - 16308467 16308477 6.0E-06 GTAAACAAGTA 11 V_HMEF2_Q6_M00406 TRANSFAC - 16308358 16308373 6.0E-06 TTTTAACATTACCCAC 16 V_HOXD10_01_M01375 TRANSFAC - 16309674 16309690 3.0E-06 CTTTAAATAAAATATAA 17 V_HOXD10_01_M01375 TRANSFAC + 16309726 16309742 8.0E-06 AATTTTATAAAAATGTC 17 V_TCF3_05_M02920 TRANSFAC - 16308323 16308337 8.0E-06 AGAGGAATAAATAAA 15 V_ARID5A_04_M02840 TRANSFAC - 16309674 16309690 9.0E-06 CTTTAAATAAAATATAA 17 V_MIF1_01_M00279 TRANSFAC + 16306838 16306855 5.0E-06 CAGGTGCTAGGTAGCAGC 18 V_FOXK1_03_M02752 TRANSFAC - 16308466 16308482 8.0E-06 TAGTGGTAAACAAGTAG 17 V_PAX4_04_M00380 TRANSFAC - 16309809 16309838 5.0E-06 AAAAAAAAAAAAAAAAAAGGAGTTCTCTTT 30 V_RFX1_02_M00281 TRANSFAC - 16306269 16306286 1.0E-05 CCATCACCAAGGTAACTT 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.