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CCDC66 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 285331 coiled-coil domain containing 66 chr3 + 56586183 - 56591683 56591183 Transcription Factor Binding Sites   Download all TFBS in the CCDC66 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 56591790 56591805 5.0E-06 GTGAATAAATAAAAAG 16 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 56592028 56592040 6.0E-06 ACCAACATAAACA 13 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 56590689 56590706 1.0E-06 AGAATTATTATGAAATTA 18 IRF7_IRF_DBD_dimeric_14_1 SELEX - 56591694 56591707 9.0E-06 CCTAAAACGAATTT 14 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 56590690 56590706 3.0E-06 GAATTATTATGAAATTA 17 SOX21_HMG_DBD_dimeric_13_2 SELEX - 56591493 56591505 1.0E-05 TTAATGCTAGTCA 13 POU3F3_POU_DBD_monomeric_12_1 SELEX + 56591790 56591801 4.0E-06 GTGAATAAATAA 12 Zfp652_C2H2_DBD_monomeric_13_1 SELEX + 56590813 56590825 0.0E+00 TTAAAGGGTTAAG 13 EMX2_homeodomain_DBD_dimeric_14_1 SELEX + 56590693 56590706 5.0E-06 TTATTATGAAATTA 14 EMX2_homeodomain_DBD_dimeric_14_1 SELEX - 56590693 56590706 4.0E-06 TAATTTCATAATAA 14 FOXF2_MA0030.1 JASPAR + 56592029 56592042 4.0E-06 CCAACATAAACACG 14 Arx_homeodomain_DBD_dimeric_13_1 SELEX + 56590695 56590707 5.0E-06 ATTATGAAATTAA 13 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 56591791 56591802 4.0E-06 TGAATAAATAAA 12 FOXL1_forkhead_full_dimeric_13_1 SELEX + 56591793 56591805 3.0E-06 AATAAATAAAAAG 13 FOXL1_forkhead_full_dimeric_13_1 SELEX + 56591927 56591939 3.0E-06 TGGAAATAAATAA 13 SOX9_HMG_full_dimeric_17_3 SELEX - 56591491 56591507 5.0E-06 TTTTAATGCTAGTCATT 17 POU3F4_POU_DBD_monomeric_11_1 SELEX + 56591791 56591801 1.0E-06 TGAATAAATAA 11 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 56591791 56591801 8.0E-06 TGAATAAATAA 11 POU1F1_POU_DBD_monomeric_14_1 SELEX + 56591923 56591936 7.0E-06 GATATGGAAATAAA 14 Alx1_homeodomain_DBD_dimeric_13_1 SELEX + 56590695 56590707 9.0E-06 ATTATGAAATTAA 13 Alx1_homeodomain_DBD_dimeric_13_1 SELEX - 56590695 56590707 9.0E-06 TTAATTTCATAAT 13 SOX7_HMG_full_dimeric_17_2 SELEX - 56591491 56591507 5.0E-06 TTTTAATGCTAGTCATT 17 NFYA_MA0060.1 JASPAR - 56591139 56591154 4.0E-06 GTGGACCAATCAGGGT 16 SOX15_HMG_full_dimeric_15_3 SELEX + 56591492 56591506 9.0E-06 ATGACTAGCATTAAA 15 POU2F2_POU_DBD_monomeric_11_1 SELEX + 56591924 56591934 6.0E-06 ATATGGAAATA 11 Pax4_MA0068.1 JASPAR + 56590634 56590663 9.0E-06 AATAAAATGCCTATAAGATATTCTTAGGAC 30 Klf4_MA0039.2 JASPAR - 56591134 56591143 1.0E-05 AGGGTGGGGC 10 POU4F3_POU_DBD_monomeric_16_1 SELEX + 56591790 56591805 3.0E-06 GTGAATAAATAAAAAG 16 NR4A2_nuclearreceptor_full_dimeric_17_1 SELEX + 56591261 56591277 2.0E-06 AGGTCAGGCCATGAACT 17 NR4A2_nuclearreceptor_full_dimeric_17_1 SELEX - 56591261 56591277 3.0E-06 AGTTCATGGCCTGACCT 17 POU6F2_POU_DBD_dimeric_16_1 SELEX + 56590692 56590707 2.0E-06 ATTATTATGAAATTAA 16 POU6F2_POU_DBD_dimeric_16_1 SELEX - 56590692 56590707 2.0E-06 TTAATTTCATAATAAT 16 ONECUT1_CUT_full_monomeric_14_1 SELEX + 56591735 56591748 7.0E-06 AAGAAATCGATGTA 14 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 56591794 56591804 2.0E-06 ATAAATAAAAA 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 56591928 56591938 9.0E-06 GGAAATAAATA 11 ALX3_homeodomain_full_dimeric_13_1 SELEX + 56590695 56590707 8.0E-06 ATTATGAAATTAA 13 ALX3_homeodomain_full_dimeric_13_1 SELEX - 56590695 56590707 6.0E-06 TTAATTTCATAAT 13 SOX2_HMG_full_dimeric_15_1 SELEX + 56591492 56591506 7.0E-06 ATGACTAGCATTAAA 15 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX - 56591485 56591498 6.0E-06 TAGTCATTAAGTGA 14 ONECUT2_CUT_DBD_monomeric_14_1 SELEX + 56591735 56591748 4.0E-06 AAGAAATCGATGTA 14 FOXI1_MA0042.1 JASPAR - 56591930 56591941 1.0E-06 TCTTATTTATTT 12 DRGX_homeodomain_DBD_dimeric_13_1 SELEX - 56590695 56590707 8.0E-06 TTAATTTCATAAT 13 Alx4_homeodomain_DBD_dimeric_13_1 SELEX + 56590695 56590707 6.0E-06 ATTATGAAATTAA 13 Alx4_homeodomain_DBD_dimeric_13_1 SELEX - 56590695 56590707 1.0E-05 TTAATTTCATAAT 13 SOX14_HMG_DBD_dimeric_15_1 SELEX + 56591492 56591506 7.0E-06 ATGACTAGCATTAAA 15 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 56591794 56591804 1.0E-06 ATAAATAAAAA 11 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX + 56590809 56590824 1.0E-05 AATGTTAAAGGGTTAA 16 TEAD3_TEA_DBD_dimeric_17_1 SELEX - 56590797 56590813 7.0E-06 ACATTGCAGACATTGTA 17 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 56590689 56590706 1.0E-06 AGAATTATTATGAAATTA 18 POU3F1_POU_DBD_monomeric_12_1 SELEX + 56591924 56591935 3.0E-06 ATATGGAAATAA 12 Uncx_homeodomain_DBD_dimeric_13_1 SELEX - 56590695 56590707 7.0E-06 TTAATTTCATAAT 13 EN1_homeodomain_full_dimeric_14_1 SELEX - 56590693 56590706 6.0E-06 TAATTTCATAATAA 14 POU3F1_POU_DBD_monomeric_12_2 SELEX + 56591790 56591801 4.0E-06 GTGAATAAATAA 12 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 56591489 56591505 7.0E-06 TTAATGACTAGCATTAA 17 TBX21_TBX_full_dimeric_19_1 SELEX + 56590858 56590876 6.0E-06 TGACCCCAAAAAGGTGTGT 19 SOX18_HMG_full_dimeric_15_3 SELEX + 56591492 56591506 4.0E-06 ATGACTAGCATTAAA 15 SOX18_HMG_full_dimeric_15_3 SELEX - 56591492 56591506 1.0E-05 TTTAATGCTAGTCAT 15 Sox3_HMG_DBD_dimeric_17_3 SELEX - 56591491 56591507 2.0E-06 TTTTAATGCTAGTCATT 17 CPEB1_RRM_full_monomeric_8_1 SELEX + 56591797 56591804 4.0E-06 AATAAAAA 8 EMX1_homeodomain_DBD_dimeric_14_1 SELEX - 56590693 56590706 6.0E-06 TAATTTCATAATAA 14 POU3F3_POU_DBD_dimeric_12_1 SELEX + 56590692 56590703 5.0E-06 ATTATTATGAAA 12 POU3F3_POU_DBD_dimeric_12_1 SELEX - 56590692 56590703 8.0E-06 TTTCATAATAAT 12 POU3F2_POU_DBD_monomeric_12_1 SELEX + 56591924 56591935 4.0E-06 ATATGGAAATAA 12 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 56590689 56590706 1.0E-06 AGAATTATTATGAAATTA 18 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 56591792 56591804 0.0E+00 GAATAAATAAAAA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 56591926 56591938 5.0E-06 ATGGAAATAAATA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 56592028 56592040 1.0E-06 ACCAACATAAACA 13 Sox1_HMG_DBD_dimeric_15_2 SELEX + 56591492 56591506 7.0E-06 ATGACTAGCATTAAA 15 POU4F1_POU_DBD_monomeric_14_1 SELEX + 56591790 56591803 6.0E-06 GTGAATAAATAAAA 14 ONECUT3_CUT_DBD_monomeric_14_1 SELEX + 56591735 56591748 8.0E-06 AAGAAATCGATGTA 14 V_HOXA9_01_M01351 TRANSFAC - 56590698 56590714 5.0E-06 AAGATCATTAATTTCAT 17 V_MEQ_01_M02049 TRANSFAC - 56591345 56591353 9.0E-06 GACACACAT 9 V_HNF3B_01_M00131 TRANSFAC - 56591791 56591805 7.0E-06 CTTTTTATTTATTCA 15 V_TST1_02_M01316 TRANSFAC - 56590697 56590713 7.0E-06 AGATCATTAATTTCATA 17 V_TST1_02_M01316 TRANSFAC + 56590698 56590714 6.0E-06 ATGAAATTAATGATCTT 17 V_DBX1_01_M01483 TRANSFAC + 56590697 56590713 8.0E-06 TATGAAATTAATGATCT 17 V_FREAC7_01_M00293 TRANSFAC + 56591789 56591804 8.0E-06 GGTGAATAAATAAAAA 16 V_FREAC7_01_M00293 TRANSFAC + 56591927 56591942 1.0E-06 TGGAAATAAATAAGAT 16 V_FREAC7_01_M00293 TRANSFAC + 56592029 56592044 9.0E-06 CCAACATAAACACGAA 16 V_CDX2_Q5_01_M01659 TRANSFAC + 56591791 56591801 1.0E-05 TGAATAAATAA 11 V_EVI1_05_M00082 TRANSFAC + 56591934 56591944 2.0E-06 AAATAAGATAG 11 V_SRY_07_M02813 TRANSFAC + 56590688 56590703 3.0E-06 GAGAATTATTATGAAA 16 V_SRY_07_M02813 TRANSFAC - 56590688 56590703 7.0E-06 TTTCATAATAATTCTC 16 V_HMGIY_Q3_M01010 TRANSFAC - 56590632 56590646 6.0E-06 TAGGCATTTTATTTA 15 V_EVI1_04_M00081 TRANSFAC + 56591929 56591943 5.0E-06 GAAATAAATAAGATA 15 V_FOXD3_01_M00130 TRANSFAC - 56591792 56591803 6.0E-06 TTTTATTTATTC 12 V_HOXA13_02_M01297 TRANSFAC + 56590633 56590641 4.0E-06 AAATAAAAT 9 V_HOXA13_02_M01297 TRANSFAC + 56591796 56591804 4.0E-06 AAATAAAAA 9 V_CBF_02_M01080 TRANSFAC + 56590727 56590742 3.0E-06 TGTACTGCGGTTATGT 16 V_MAFB_03_M02879 TRANSFAC - 56590692 56590706 4.0E-06 TAATTTCATAATAAT 15 V_PROP1_01_M01294 TRANSFAC - 56590696 56590706 6.0E-06 TAATTTCATAA 11 V_OCT1_Q5_01_M00930 TRANSFAC - 56591925 56591935 3.0E-06 TTATTTCCATA 11 V_MEIS1AHOXA9_01_M00420 TRANSFAC - 56591500 56591513 6.0E-06 TGGCAGTTTTAATG 14 V_CEBP_C_M00201 TRANSFAC + 56591677 56591694 7.0E-06 AGAATGTTGAAACGCCCA 18 V_POU1F1_Q6_M00744 TRANSFAC + 56591790 56591799 8.0E-06 GTGAATAAAT 10 V_GATA1_03_M00127 TRANSFAC + 56591955 56591968 4.0E-06 AAGGAGATTACAGT 14 V_FOXO3A_Q1_M01137 TRANSFAC + 56590630 56590641 4.0E-06 TCTAAATAAAAT 12 V_FOXO3A_Q1_M01137 TRANSFAC + 56591793 56591804 3.0E-06 AATAAATAAAAA 12 V_FOXO3A_Q1_M01137 TRANSFAC + 56591931 56591942 4.0E-06 AATAAATAAGAT 12 V_PLAG1_02_M01973 TRANSFAC - 56591055 56591070 9.0E-06 TCCCCTTTTGTGCCCC 16 V_SOX11_04_M02899 TRANSFAC + 56590689 56590702 0.0E+00 AGAATTATTATGAA 14 V_CEBP_Q2_M00190 TRANSFAC - 56590693 56590706 8.0E-06 TAATTTCATAATAA 14 V_HNF3_Q6_01_M01012 TRANSFAC - 56591788 56591805 2.0E-06 CTTTTTATTTATTCACCC 18 V_FOXJ1_03_M02750 TRANSFAC + 56591791 56591806 6.0E-06 TGAATAAATAAAAAGG 16 V_STAT6_01_M00494 TRANSFAC - 56591927 56591934 7.0E-06 TATTTCCA 8 V_DLX2_01_M01468 TRANSFAC - 56590717 56590732 4.0E-06 AGTACAATTATTATAC 16 V_AFP1_Q6_M00616 TRANSFAC + 56591932 56591942 9.0E-06 ATAAATAAGAT 11 V_AIRE_02_M01000 TRANSFAC - 56592032 56592056 6.0E-06 GGTTATGAACAGTTCGTGTTTATGT 25 V_PU1_Q4_M01172 TRANSFAC - 56590678 56590696 5.0E-06 ATAATTCTCTTCCCGATTT 19 V_PU1_Q4_M01172 TRANSFAC - 56591062 56591080 7.0E-06 TGCCGTTTGTTCCCCTTTT 19 V_SOX21_03_M02803 TRANSFAC + 56590688 56590703 5.0E-06 GAGAATTATTATGAAA 16 V_SOX21_03_M02803 TRANSFAC - 56590688 56590703 6.0E-06 TTTCATAATAATTCTC 16 V_SOX21_03_M02803 TRANSFAC + 56590715 56590730 6.0E-06 AGGTATAATAATTGTA 16 V_NFAT2_01_M01748 TRANSFAC + 56591926 56591934 6.0E-06 ATGGAAATA 9 V_TCFAP2E_04_M02926 TRANSFAC - 56590556 56590569 2.0E-06 CTCAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 56590558 56590571 2.0E-06 GTCTCAAAAAAAAA 14 V_NKX62_Q2_M00489 TRANSFAC + 56591929 56591940 3.0E-06 GAAATAAATAAG 12 V_KLF7_04_M02877 TRANSFAC + 56591682 56591698 5.0E-06 GTTGAAACGCCCAAATT 17 V_ELF4_04_M02850 TRANSFAC - 56590553 56590569 3.0E-06 CTCAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 56590554 56590570 0.0E+00 TCTCAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 56590555 56590571 1.0E-06 GTCTCAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 56590627 56590643 5.0E-06 CTTTCTAAATAAAATGC 17 V_CRX_Q4_M00623 TRANSFAC - 56590698 56590710 2.0E-06 TCATTAATTTCAT 13 V_FOXA2_02_M02853 TRANSFAC - 56591833 56591847 6.0E-06 CAAAATATCAAACTT 15 V_FREAC3_01_M00291 TRANSFAC - 56591530 56591545 6.0E-06 CTGAGGTAAATAAGGG 16 V_ZFP105_03_M02827 TRANSFAC - 56590555 56590569 1.0E-06 CTCAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 56591793 56591807 0.0E+00 AATAAATAAAAAGGG 15 V_RXRA_03_M02791 TRANSFAC + 56590853 56590869 4.0E-06 AATGGTGACCCCAAAAA 17 V_POLY_C_M00212 TRANSFAC + 56591995 56592012 8.0E-06 CATTGAAGCTCTTTTCTT 18 V_ZBTB7B_04_M02930 TRANSFAC - 56591315 56591331 6.0E-06 CTGACGACCACCTTGCT 17 V_XFD3_01_M00269 TRANSFAC + 56591791 56591804 7.0E-06 TGAATAAATAAAAA 14 V_HIC1_03_M01073 TRANSFAC - 56591161 56591178 6.0E-06 TAGGGGTGCCGGCGAGCT 18 V_CEBPD_Q6_M00621 TRANSFAC - 56590694 56590705 6.0E-06 AATTTCATAATA 12 V_SOX18_03_M02801 TRANSFAC + 56590688 56590703 1.0E-05 GAGAATTATTATGAAA 16 V_ELF5_01_M01197 TRANSFAC + 56591924 56591934 1.0E-05 ATATGGAAATA 11 V_PIT1_01_M01465 TRANSFAC - 56590697 56590713 9.0E-06 AGATCATTAATTTCATA 17 V_XFD2_01_M00268 TRANSFAC + 56591791 56591804 4.0E-06 TGAATAAATAAAAA 14 V_NCX_02_M01420 TRANSFAC + 56590697 56590713 8.0E-06 TATGAAATTAATGATCT 17 V_OCT_Q6_M00795 TRANSFAC - 56591925 56591935 8.0E-06 TTATTTCCATA 11 V_FOXO1_Q5_M01216 TRANSFAC - 56591658 56591666 8.0E-06 AAAAACAAG 9 V_TFIII_Q6_M00706 TRANSFAC + 56591335 56591343 6.0E-06 AGAGGGAGG 9 V_FREAC2_01_M00290 TRANSFAC + 56592029 56592044 3.0E-06 CCAACATAAACACGAA 16 V_HFH8_01_M00294 TRANSFAC - 56591791 56591803 9.0E-06 TTTTATTTATTCA 13 V_BRN4_01_M01473 TRANSFAC - 56590697 56590713 7.0E-06 AGATCATTAATTTCATA 17 V_BRN4_01_M01473 TRANSFAC + 56590698 56590714 7.0E-06 ATGAAATTAATGATCTT 17 V_FOXL1_02_M02857 TRANSFAC - 56590689 56590704 8.0E-06 ATTTCATAATAATTCT 16 V_CBF_01_M01079 TRANSFAC + 56590727 56590742 9.0E-06 TGTACTGCGGTTATGT 16 V_PLAG1_01_M01778 TRANSFAC + 56591055 56591070 3.0E-06 GGGGCACAAAAGGGGA 16 V_ZBTB4_04_M02929 TRANSFAC - 56591505 56591520 2.0E-06 GGATCACTGGCAGTTT 16 V_NFY_01_M00287 TRANSFAC - 56591139 56591154 3.0E-06 GTGGACCAATCAGGGT 16 V_FOXO3_01_M00477 TRANSFAC - 56592031 56592044 8.0E-06 TTCGTGTTTATGTT 14 V_CEBPB_Q6_M01896 TRANSFAC + 56590696 56590705 7.0E-06 TTATGAAATT 10 V_DMRT2_01_M01147 TRANSFAC + 56590821 56590836 1.0E-06 TTAAGTGTTACAATGT 16 V_SRF_06_M02916 TRANSFAC - 56590553 56590569 0.0E+00 CTCAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 56590554 56590570 0.0E+00 TCTCAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 56590555 56590571 2.0E-06 GTCTCAAAAAAAAAAAA 17 V_HFH3_01_M00289 TRANSFAC - 56591929 56591941 6.0E-06 TCTTATTTATTTC 13 V_FOXJ2_01_M00422 TRANSFAC + 56591926 56591943 8.0E-06 ATGGAAATAAATAAGATA 18 V_HOXD8_01_M01432 TRANSFAC + 56590697 56590713 6.0E-06 TATGAAATTAATGATCT 17 V_EKLF_Q5_M01874 TRANSFAC + 56591135 56591144 9.0E-06 CCCCACCCTG 10 V_HOMEZ_01_M01429 TRANSFAC - 56591734 56591750 1.0E-06 ACTACATCGATTTCTTG 17 V_FOXO1_01_M00473 TRANSFAC - 56591658 56591667 9.0E-06 CAAAAACAAG 10 V_HNF3B_Q6_M02014 TRANSFAC - 56591793 56591801 1.0E-05 TTATTTATT 9 V_HNF3B_Q6_M02014 TRANSFAC - 56591931 56591939 1.0E-05 TTATTTATT 9 V_CEBP_Q2_01_M00912 TRANSFAC - 56590693 56590704 2.0E-06 ATTTCATAATAA 12 V_SOX5_07_M02909 TRANSFAC + 56590686 56590702 7.0E-06 AAGAGAATTATTATGAA 17 V_CEBPE_01_M01772 TRANSFAC + 56590695 56590704 8.0E-06 ATTATGAAAT 10 V_TCF3_05_M02920 TRANSFAC - 56590556 56590570 4.0E-06 TCTCAAAAAAAAAAA 15 V_GLIS2_04_M02863 TRANSFAC + 56590692 56590705 6.0E-06 ATTATTATGAAATT 14 V_EVI1_03_M00080 TRANSFAC + 56591934 56591944 8.0E-06 AAATAAGATAG 11 V_SOX14_03_M02798 TRANSFAC + 56590688 56590703 2.0E-06 GAGAATTATTATGAAA 16 V_SOX14_03_M02798 TRANSFAC - 56590688 56590703 6.0E-06 TTTCATAATAATTCTC 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.