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CDH19 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 28513 cadherin 19, type 2 chr18 - 64270875 - 64276375 64271375 Transcription Factor Binding Sites   Download all TFBS in the CDH19 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Foxa2_MA0047.2 JASPAR + 64266623 64266634 9.0E-06 TATTTACAGAGG 12 Sox1_HMG_DBD_dimeric_14_1 SELEX + 64271481 64271494 7.0E-06 GGAATTAAAATGCA 14 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX - 64266485 64266494 3.0E-06 ACAATTAAAA 10 ZNF713_C2H2_full_monomeric_17_1 SELEX - 64266473 64266489 1.0E-05 TAAAAAAAATCCCCAAA 17 POU3F3_POU_DBD_monomeric_12_1 SELEX + 64266465 64266476 8.0E-06 TTGCATATTTTG 12 En1_MA0027.1 JASPAR + 64266524 64266534 8.0E-06 AAGTAATATTC 11 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX + 64266663 64266676 1.0E-05 AAGGTCAAATCTCA 14 BARX1_homeodomain_DBD_monomeric_8_1 SELEX - 64266487 64266494 5.0E-06 ACAATTAA 8 SOX9_HMG_DBD_monomeric_9_1 SELEX + 64266587 64266595 9.0E-06 AAACAATGG 9 Pax4_MA0068.1 JASPAR - 64266466 64266495 9.0E-06 GACAATTAAAAAAAATCCCCAAAATATGCA 30 Pax4_MA0068.1 JASPAR - 64271508 64271537 2.0E-06 AAAAAAACAAAGATAATCAGCTCATACTAC 30 Pax4_MA0068.1 JASPAR - 64271513 64271542 1.0E-06 AAAAAAAAAAAACAAAGATAATCAGCTCAT 30 OTX2_homeodomain_DBD_dimeric_15_1 SELEX + 64266452 64266466 0.0E+00 TTTAATGCTATTATT 15 HMX3_homeodomain_DBD_monomeric_11_1 SELEX - 64266485 64266495 3.0E-06 GACAATTAAAA 11 POU6F2_POU_DBD_dimeric_16_1 SELEX + 64271510 64271525 1.0E-05 AGTATGAGCTGATTAT 16 SOX14_HMG_DBD_dimeric_13_1 SELEX - 64271388 64271400 1.0E-06 AAAATAGCATTGA 13 SRY_MA0084.1 JASPAR + 64266585 64266593 7.0E-06 TAAAACAAT 9 Otx1_homeodomain_DBD_dimeric_15_1 SELEX + 64266452 64266466 1.0E-06 TTTAATGCTATTATT 15 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX + 64266661 64266670 3.0E-06 TGAAGGTCAA 10 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX + 64266661 64266671 2.0E-06 TGAAGGTCAAA 11 HMX2_homeodomain_DBD_monomeric_11_1 SELEX - 64266485 64266495 4.0E-06 GACAATTAAAA 11 SOX9_MA0077.1 JASPAR + 64266587 64266595 2.0E-06 AAACAATGG 9 RORA_1_MA0071.1 JASPAR + 64266660 64266669 6.0E-06 ATGAAGGTCA 10 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX - 64266485 64266495 1.0E-05 GACAATTAAAA 11 Sox1_HMG_DBD_dimeric_15_2 SELEX - 64266615 64266629 1.0E-05 GTAAATACCAGTCTA 15 HMX1_homeodomain_DBD_monomeric_11_1 SELEX - 64266485 64266495 5.0E-06 GACAATTAAAA 11 V_HOXA9_01_M01351 TRANSFAC - 64266481 64266497 8.0E-06 CAGACAATTAAAAAAAA 17 V_AP1_Q2_M00173 TRANSFAC + 64266517 64266527 3.0E-06 AATGACTAAGT 11 V_DBX1_01_M01483 TRANSFAC + 64266386 64266402 9.0E-06 TATTTAATCATGAAAAG 17 V_DBX1_01_M01483 TRANSFAC - 64266481 64266497 1.0E-06 CAGACAATTAAAAAAAA 17 V_OBOX5_05_M03066 TRANSFAC + 64266473 64266489 7.0E-06 TTTGGGGATTTTTTTTA 17 V_ATF5_01_M01295 TRANSFAC - 64271596 64271606 4.0E-06 ATTCTCCCTTT 11 V_SOX14_05_M02902 TRANSFAC + 64266584 64266598 6.0E-06 CTAAAACAATGGAAC 15 V_MAFK_03_M02776 TRANSFAC + 64271485 64271499 7.0E-06 TTAAAATGCAGACAG 15 V_CEBP_Q3_M00770 TRANSFAC + 64271622 64271633 5.0E-06 GAATTTTGCAAG 12 V_SOX30_03_M02804 TRANSFAC + 64266584 64266599 1.0E-06 CTAAAACAATGGAACT 16 V_HMGIY_Q3_M01010 TRANSFAC + 64266475 64266489 3.0E-06 TGGGGATTTTTTTTA 15 V_RORA1_01_M00156 TRANSFAC + 64266658 64266670 1.0E-06 AAATGAAGGTCAA 13 V_NKX29_01_M01352 TRANSFAC - 64271567 64271583 1.0E-06 CAATAAGTACTTTATTT 17 V_NKX29_01_M01352 TRANSFAC + 64271568 64271584 5.0E-06 AATAAAGTACTTATTGG 17 V_HOXA13_02_M01297 TRANSFAC + 64266412 64266420 7.0E-06 ACATAAAAC 9 V_MAFB_03_M02879 TRANSFAC - 64271621 64271635 0.0E+00 TACTTGCAAAATTCT 15 V_IRF_Q6_01_M00972 TRANSFAC + 64266545 64266555 4.0E-06 GAAAGAGAAAT 11 V_SRY_02_M00160 TRANSFAC + 64266585 64266596 4.0E-06 TAAAACAATGGA 12 V_FOXJ1_03_M02750 TRANSFAC + 64266405 64266420 1.0E-05 ATTGTCAACATAAAAC 16 V_AFP1_Q6_M00616 TRANSFAC - 64266456 64266466 8.0E-06 AATAATAGCAT 11 V_PU1_Q4_M01172 TRANSFAC - 64266650 64266668 0.0E+00 GACCTTCATTTCCTCATCT 19 V_TCFAP2E_04_M02926 TRANSFAC - 64266480 64266493 2.0E-06 CAATTAAAAAAAAT 14 V_AP1_Q6_M00174 TRANSFAC + 64266517 64266527 5.0E-06 AATGACTAAGT 11 V_HMGA2_01_M01300 TRANSFAC + 64266471 64266485 1.0E-06 ATTTTGGGGATTTTT 15 V_ELF4_04_M02850 TRANSFAC - 64266476 64266492 9.0E-06 AATTAAAAAAAATCCCC 17 V_TST1_01_M00133 TRANSFAC + 64271479 64271493 2.0E-06 CTGGAATTAAAATGC 15 V_SOX7_03_M02807 TRANSFAC - 64266452 64266473 4.0E-06 AATATGCAATAATAGCATTAAA 22 V_SOX7_03_M02807 TRANSFAC + 64266581 64266602 0.0E+00 AATCTAAAACAATGGAACTCAT 22 V_OBOX5_02_M01480 TRANSFAC + 64266473 64266489 7.0E-06 TTTGGGGATTTTTTTTA 17 V_FOXA2_02_M02853 TRANSFAC + 64271441 64271455 9.0E-06 CAAAATATCATAAGG 15 V_OCT1_02_M00136 TRANSFAC - 64266462 64266476 4.0E-06 CAAAATATGCAATAA 15 V_OCT1_02_M00136 TRANSFAC + 64266525 64266539 7.0E-06 AGTAATATTCAGCCA 15 V_ZFP105_03_M02827 TRANSFAC - 64266481 64266495 1.0E-06 GACAATTAAAAAAAA 15 V_IRF5_04_M02873 TRANSFAC - 64271304 64271318 4.0E-06 CACATCGAGAGTTTG 15 V_NKX61_01_M00424 TRANSFAC + 64266484 64266496 1.0E-06 TTTTTAATTGTCT 13 V_XFD3_01_M00269 TRANSFAC + 64266405 64266418 1.0E-06 ATTGTCAACATAAA 14 V_CEBPB_02_M00117 TRANSFAC - 64271622 64271635 1.0E-05 TACTTGCAAAATTC 14 V_HOXD12_01_M01380 TRANSFAC + 64271413 64271429 6.0E-06 TAGAGTCATAAACACTG 17 V_AP1_Q4_M00188 TRANSFAC + 64266517 64266527 1.0E-06 AATGACTAAGT 11 V_ARID3A_02_M02839 TRANSFAC + 64266550 64266564 4.0E-06 AGAAATATCACATTT 15 V_HOXC11_01_M01329 TRANSFAC + 64271413 64271428 5.0E-06 TAGAGTCATAAACACT 16 V_SOX18_03_M02801 TRANSFAC - 64266582 64266597 0.0E+00 TTCCATTGTTTTAGAT 16 V_HOXD11_01_M01434 TRANSFAC + 64271413 64271429 3.0E-06 TAGAGTCATAAACACTG 17 V_NKX52_01_M01315 TRANSFAC - 64266482 64266498 2.0E-06 GCAGACAATTAAAAAAA 17 V_OCT1_04_M00138 TRANSFAC + 64266387 64266409 5.0E-06 ATTTAATCATGAAAAGGTATTGT 23 V_HMX1_02_M01481 TRANSFAC - 64266482 64266498 4.0E-06 GCAGACAATTAAAAAAA 17 V_HOXC12_01_M01437 TRANSFAC + 64271413 64271429 7.0E-06 TAGAGTCATAAACACTG 17 V_DAX1_01_M01248 TRANSFAC + 64266656 64266675 3.0E-06 GGAAATGAAGGTCAAATCTC 20 V_RREB1_01_M00257 TRANSFAC - 64266635 64266648 9.0E-06 CCCCACCCCACCAG 14 V_NKX3A_01_M00451 TRANSFAC - 64271572 64271583 3.0E-06 CAATAAGTACTT 12 V_NCX_02_M01420 TRANSFAC - 64266481 64266497 1.0E-06 CAGACAATTAAAAAAAA 17 V_HB24_01_M01399 TRANSFAC - 64266384 64266398 6.0E-06 TCATGATTAAATACT 15 V_GATA5_04_M02860 TRANSFAC + 64266547 64266563 8.0E-06 AAGAGAAATATCACATT 17 V_HOXA11_01_M01378 TRANSFAC + 64271413 64271428 4.0E-06 TAGAGTCATAAACACT 16 V_SOX11_03_M02795 TRANSFAC + 64266583 64266599 1.0E-06 TCTAAAACAATGGAACT 17 V_NR1B1_Q6_M02110 TRANSFAC + 64266662 64266671 1.0E-05 GAAGGTCAAA 10 V_SOX9_B1_M00410 TRANSFAC + 64266584 64266597 0.0E+00 CTAAAACAATGGAA 14 V_NKX23_01_M01457 TRANSFAC + 64271568 64271583 2.0E-06 AATAAAGTACTTATTG 16 V_NKX23_01_M01457 TRANSFAC - 64271568 64271583 2.0E-06 CAATAAGTACTTTATT 16 V_ELF1_Q6_M00746 TRANSFAC + 64266650 64266661 3.0E-06 AGATGAGGAAAT 12 V_SOX15_03_M02799 TRANSFAC + 64266583 64266599 5.0E-06 TCTAAAACAATGGAACT 17 V_MTF1_06_M02882 TRANSFAC - 64266479 64266492 0.0E+00 AATTAAAAAAAATC 14 V_TAL1_01_M01591 TRANSFAC - 64266648 64266660 6.0E-06 TTTCCTCATCTGC 13 V_HOXB8_01_M01451 TRANSFAC - 64266483 64266498 9.0E-06 GCAGACAATTAAAAAA 16 V_BARHL1_01_M01332 TRANSFAC - 64266484 64266499 9.0E-06 AGCAGACAATTAAAAA 16 V_FOXL1_04_M02753 TRANSFAC + 64266403 64266419 8.0E-06 GTATTGTCAACATAAAA 17 V_NKX3A_02_M01383 TRANSFAC - 64271567 64271583 0.0E+00 CAATAAGTACTTTATTT 17 V_NKX3A_02_M01383 TRANSFAC + 64271568 64271584 2.0E-06 AATAAAGTACTTATTGG 17 V_ERR1_Q2_M00511 TRANSFAC + 64266658 64266671 1.0E-06 AAATGAAGGTCAAA 14 V_NKX22_01_M00485 TRANSFAC - 64271572 64271581 3.0E-06 ATAAGTACTT 10 V_OTX2_01_M01387 TRANSFAC + 64266473 64266489 9.0E-06 TTTGGGGATTTTTTTTA 17 V_FOXA2_03_M02260 TRANSFAC + 64266623 64266634 9.0E-06 TATTTACAGAGG 12 V_ESRRA_03_M02748 TRANSFAC + 64266658 64266674 4.0E-06 AAATGAAGGTCAAATCT 17 V_OCT1_06_M00162 TRANSFAC - 64266553 64266566 0.0E+00 CAAAATGTGATATT 14 V_OCT1_07_M00248 TRANSFAC - 64271483 64271494 6.0E-06 TGCATTTTAATT 12 V_IRF1_Q6_01_M01881 TRANSFAC - 64266544 64266557 4.0E-06 ATATTTCTCTTTCC 14 V_SOX8_03_M02808 TRANSFAC - 64266583 64266599 6.0E-06 AGTTCCATTGTTTTAGA 17 V_DMRT2_01_M01147 TRANSFAC - 64266589 64266604 1.0E-05 CTATGAGTTCCATTGT 16 V_SRF_06_M02916 TRANSFAC - 64266475 64266491 4.0E-06 ATTAAAAAAAATCCCCA 17 V_SRF_06_M02916 TRANSFAC - 64266476 64266492 8.0E-06 AATTAAAAAAAATCCCC 17 V_SOX2_Q6_M01272 TRANSFAC - 64266584 64266599 1.0E-05 AGTTCCATTGTTTTAG 16 V_HOXC10_01_M01361 TRANSFAC + 64271413 64271428 3.0E-06 TAGAGTCATAAACACT 16 V_BSX_01_M01442 TRANSFAC - 64266482 64266497 1.0E-05 CAGACAATTAAAAAAA 16 V_BARHL2_01_M01446 TRANSFAC - 64266484 64266499 6.0E-06 AGCAGACAATTAAAAA 16 V_PIT1_Q6_M00802 TRANSFAC - 64266384 64266401 0.0E+00 TTTTCATGATTAAATACT 18 V_SOX15_04_M02903 TRANSFAC - 64271607 64271621 9.0E-06 TTGTATGTAAGTTGA 15 V_RXRLXRB_01_M01198 TRANSFAC + 64266664 64266676 7.0E-06 AGGTCAAATCTCA 13 V_CEBP_Q2_01_M00912 TRANSFAC - 64271622 64271633 8.0E-06 CTTGCAAAATTC 12 V_HMX3_02_M01413 TRANSFAC - 64266482 64266498 1.0E-06 GCAGACAATTAAAAAAA 17 V_MAFK_04_M02880 TRANSFAC - 64266463 64266477 3.0E-06 CCAAAATATGCAATA 15 V_GFI1_Q6_01_M02010 TRANSFAC - 64266668 64266677 7.0E-06 CTGAGATTTG 10 V_HOXD10_01_M01375 TRANSFAC - 64266481 64266497 1.0E-06 CAGACAATTAAAAAAAA 17 V_TCF11MAFG_01_M00284 TRANSFAC + 64266513 64266534 1.0E-06 GAAGAATGACTAAGTAATATTC 22 V_SOX5_04_M02910 TRANSFAC - 64266386 64266400 4.0E-06 TTTCATGATTAAATA 15 V_DTYPEPA_B_M00334 TRANSFAC - 64266451 64266460 5.0E-06 AGCATTAAAC 10 V_OTX1_01_M01366 TRANSFAC + 64266473 64266489 7.0E-06 TTTGGGGATTTTTTTTA 17 V_CEBPG_Q6_01_M01869 TRANSFAC - 64266560 64266571 5.0E-06 GATGACAAAATG 12 V_CEBPG_Q6_01_M01869 TRANSFAC + 64266651 64266662 6.0E-06 GATGAGGAAATG 12 V_FOXK1_03_M02752 TRANSFAC + 64266403 64266419 9.0E-06 GTATTGTCAACATAAAA 17 V_PAX4_04_M00380 TRANSFAC - 64266458 64266487 9.0E-06 AAAAAAATCCCCAAAATATGCAATAATAGC 30 V_PAX4_04_M00380 TRANSFAC - 64271510 64271539 0.0E+00 AAAAAAAAACAAAGATAATCAGCTCATACT 30 V_PAX4_04_M00380 TRANSFAC - 64271513 64271542 7.0E-06 AAAAAAAAAAAACAAAGATAATCAGCTCAT 30 V_SMAD1_01_M01590 TRANSFAC + 64266585 64266596 8.0E-06 TAAAACAATGGA 12 V_SOX9_Q4_M01284 TRANSFAC + 64266587 64266597 7.0E-06 AAACAATGGAA 11 V_RORA2_01_M00157 TRANSFAC + 64266658 64266670 1.0E-05 AAATGAAGGTCAA 13 V_CEBPA_Q6_M01866 TRANSFAC + 64271622 64271634 6.0E-06 GAATTTTGCAAGT 13 V_TR4_03_M01782 TRANSFAC + 64266664 64266676 8.0E-06 AGGTCAAATCTCA 13 V_NANOG_02_M01247 TRANSFAC + 64266581 64266600 5.0E-06 AATCTAAAACAATGGAACTC 20 V_OCT4_01_M01125 TRANSFAC + 64271483 64271497 4.0E-06 AATTAAAATGCAGAC 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.