Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

HKR1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 284459 HKR1, GLI-Kruppel zinc finger family member chr19 + 37820579 - 37826079 37825579 Transcription Factor Binding Sites   Download all TFBS in the HKR1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 37824566 37824576 6.0E-06 GATGACTCACT 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 37824566 37824576 9.0E-06 AGTGAGTCATC 11 CTCF_MA0139.1 JASPAR - 37820771 37820789 3.0E-06 TAGCCACAGGATGGCACCA 19 SP3_C2H2_DBD_monomeric_11_1 SELEX - 37824499 37824509 5.0E-06 GCCACACCCAC 11 SOX10_HMG_full_dimeric_16_1 SELEX - 37825625 37825640 5.0E-06 AACAAGGTGCAGAGGT 16 MYF6_bHLH_full_dimeric_10_1 SELEX + 37824585 37824594 8.0E-06 AACAATTGTC 10 FLI1_ETS_full_monomeric_10_1 SELEX - 37825550 37825559 2.0E-06 ACCGGAAGTG 10 ETV5_ETS_DBD_monomeric_10_1 SELEX - 37825550 37825559 3.0E-06 ACCGGAAGTG 10 ERG_ETS_full_monomeric_10_1 SELEX - 37825550 37825559 1.0E-06 ACCGGAAGTG 10 ETV3_ETS_DBD_monomeric_10_1 SELEX - 37825550 37825559 1.0E-06 ACCGGAAGTG 10 SOX9_HMG_full_dimeric_16_1 SELEX - 37825625 37825640 6.0E-06 AACAAGGTGCAGAGGT 16 IRF8_IRF_full_dimeric_14_1 SELEX - 37825646 37825659 6.0E-06 CTGAAGCCGAAAGT 14 SOX8_HMG_DBD_dimeric_16_1 SELEX - 37825625 37825640 6.0E-06 AACAAGGTGCAGAGGT 16 FEV_ETS_DBD_monomeric_10_1 SELEX - 37825550 37825559 2.0E-06 ACCGGAAGTG 10 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX + 37825614 37825625 5.0E-06 GTCTTTCCCACA 12 ETV1_ETS_DBD_monomeric_10_1 SELEX - 37825550 37825559 2.0E-06 ACCGGAAGTG 10 NFYA_MA0060.1 JASPAR - 37825329 37825344 8.0E-06 GTAAACCAATGAGATC 16 SOX8_HMG_DBD_dimeric_14_1 SELEX - 37824572 37824585 8.0E-06 TGAATTGTCAGTGA 14 GCM1_GCM_full_dimeric_16_1 SELEX + 37820767 37820782 7.0E-06 GTGTTGGTGCCATCCT 16 IRF7_IRF_DBD_trimeric_17_1 SELEX - 37829660 37829676 1.0E-05 CAACAGAAACTCCTTTG 17 HOMEZ_HOMEZ_DBD_monomer-or-dimer_12_1 SELEX + 37829635 37829646 1.0E-05 TAAACGATTTGA 12 Klf4_MA0039.2 JASPAR + 37824500 37824509 2.0E-06 TGGGTGTGGC 10 ETV2_ETS_DBD_monomeric_11_1 SELEX - 37825550 37825560 1.0E-05 GACCGGAAGTG 11 ETS1_ETS_full_monomeric_10_1 SELEX - 37825550 37825559 3.0E-06 ACCGGAAGTG 10 ETV4_ETS_DBD_monomeric_10_1 SELEX - 37825550 37825559 4.0E-06 ACCGGAAGTG 10 ELK4_ETS_DBD_monomeric_10_1 SELEX - 37825550 37825559 2.0E-06 ACCGGAAGTG 10 ELK4_MA0076.1 JASPAR - 37825551 37825559 4.0E-06 ACCGGAAGT 9 SP1_C2H2_DBD_monomeric_11_1 SELEX - 37824499 37824509 7.0E-06 GCCACACCCAC 11 ZNF143_C2H2_DBD_monomeric_16_1 SELEX - 37824490 37824505 7.0E-06 CACCCACAAGGCACCT 16 Foxd3_MA0041.1 JASPAR - 37824580 37824591 1.0E-05 AATTGTTGAATT 12 ERF_ETS_DBD_monomeric_10_1 SELEX - 37825550 37825559 1.0E-06 ACCGGAAGTG 10 ELK1_ETS_full_monomeric_10_1 SELEX - 37825550 37825559 2.0E-06 ACCGGAAGTG 10 JDP2_bZIP_full_dimeric_9_1 SELEX + 37824567 37824575 7.0E-06 ATGACTCAC 9 GABPA_ETS_full_monomeric_10_1 SELEX - 37825550 37825559 2.0E-06 ACCGGAAGTG 10 Elk3_ETS_DBD_monomeric_10_1 SELEX - 37825550 37825559 2.0E-06 ACCGGAAGTG 10 ETV6_ETS_full_monomeric_10_1 SELEX - 37825500 37825509 1.0E-06 AGCGGAAGTG 10 ETV6_ETS_full_monomeric_10_1 SELEX - 37825550 37825559 3.0E-06 ACCGGAAGTG 10 V_MINI20_B_M00324 TRANSFAC - 37824606 37824626 9.0E-06 CTAGGGCATCAAGCAGCCAGA 21 V_CEBPG_Q6_M00622 TRANSFAC + 37825537 37825549 7.0E-06 TTGACGTCAGAAA 13 V_ERG_03_M02062 TRANSFAC - 37825550 37825559 2.0E-06 ACCGGAAGTG 10 V_ERM_01_M01992 TRANSFAC - 37825550 37825559 3.0E-06 ACCGGAAGTG 10 V_SAP1A_01_M01167 TRANSFAC - 37825550 37825560 3.0E-06 GACCGGAAGTG 11 V_ELK1_04_M01165 TRANSFAC - 37825550 37825560 1.0E-06 GACCGGAAGTG 11 V_EBF_Q6_M00977 TRANSFAC - 37824593 37824603 7.0E-06 GTCCCTTAGGA 11 V_ATF_01_M00017 TRANSFAC - 37825535 37825548 8.0E-06 TTCTGACGTCAACG 14 V_GABPA_02_M02074 TRANSFAC - 37825550 37825559 8.0E-06 ACCGGAAGTG 10 V_BACH2_01_M00490 TRANSFAC - 37824566 37824576 4.0E-06 AGTGAGTCATC 11 V_SOX30_03_M02804 TRANSFAC + 37824581 37824596 1.0E-06 ATTCAACAATTGTCCT 16 V_CETS1_01_M01986 TRANSFAC - 37825550 37825559 4.0E-06 ACCGGAAGTG 10 V_LMAF_Q2_M01139 TRANSFAC + 37825321 37825329 6.0E-06 GGTCAGCAG 9 V_ETV3_01_M01990 TRANSFAC - 37825550 37825559 3.0E-06 ACCGGAAGTG 10 V_GABP_B_M00341 TRANSFAC - 37825548 37825559 8.0E-06 ACCGGAAGTGTT 12 V_HNF3_Q6_01_M01012 TRANSFAC + 37829670 37829687 1.0E-06 TCTGTTGTTTGCTTTGGT 18 V_HFH4_01_M00742 TRANSFAC - 37829631 37829643 5.0E-06 AATCGTTTACTTA 13 V_GKLF_02_M01588 TRANSFAC - 37824498 37824509 7.0E-06 GCCACACCCACA 12 V_HNF4A_04_M02764 TRANSFAC - 37820809 37820825 4.0E-06 GACTAGGGGTCAAAACA 17 V_CETS2_02_M02064 TRANSFAC - 37825550 37825559 6.0E-06 ACCGGAAGTG 10 V_PEA3_01_M01991 TRANSFAC - 37825550 37825559 2.0E-06 ACCGGAAGTG 10 V_AP1_Q6_M00174 TRANSFAC + 37824566 37824576 2.0E-06 GATGACTCACT 11 V_SPIC_01_M02042 TRANSFAC - 37825500 37825509 9.0E-06 AGCGGAAGTG 10 V_BACH1_01_M00495 TRANSFAC - 37824564 37824578 7.0E-06 TCAGTGAGTCATCTT 15 V_FLI1_01_M02038 TRANSFAC - 37825550 37825559 2.0E-06 ACCGGAAGTG 10 V_SOX7_03_M02807 TRANSFAC + 37829651 37829672 4.0E-06 ACTAAGTAACAAAGGAGTTTCT 22 V_ELK1_06_M02059 TRANSFAC - 37825550 37825559 3.0E-06 ACCGGAAGTG 10 V_ELK1_05_M01981 TRANSFAC - 37825550 37825559 5.0E-06 ACCGGAAGTG 10 V_SAP1A_02_M01983 TRANSFAC - 37825550 37825559 3.0E-06 ACCGGAAGTG 10 V_FLI1_02_M02073 TRANSFAC - 37825550 37825559 5.0E-06 ACCGGAAGTG 10 V_PET1_02_M02072 TRANSFAC - 37825550 37825559 6.0E-06 ACCGGAAGTG 10 V_RXRA_03_M02791 TRANSFAC + 37820809 37820825 2.0E-06 TGTTTTGACCCCTAGTC 17 V_HIC1_06_M02867 TRANSFAC - 37825784 37825799 2.0E-06 GGAGGTGCCCAAAGGA 16 V_PAX9_B_M00329 TRANSFAC - 37825702 37825725 0.0E+00 GACACGCAGAGGGGCATGCTGACT 24 V_MRF2_01_M00454 TRANSFAC + 37825472 37825485 7.0E-06 AACTACAATCCCCA 14 V_RFX1_01_M00280 TRANSFAC + 37829646 37829662 1.0E-06 AAGGAACTAAGTAACAA 17 V_ERF_01_M01984 TRANSFAC - 37825550 37825559 3.0E-06 ACCGGAAGTG 10 V_OLF1_01_M00261 TRANSFAC + 37824587 37824608 8.0E-06 CAATTGTCCTAAGGGACTTTCT 22 V_ER81_02_M02065 TRANSFAC - 37825550 37825559 2.0E-06 ACCGGAAGTG 10 V_ERG_01_M01752 TRANSFAC - 37825551 37825559 4.0E-06 ACCGGAAGT 9 V_GABPA_01_M02039 TRANSFAC - 37825550 37825559 3.0E-06 ACCGGAAGTG 10 V_CETS2_01_M01989 TRANSFAC - 37825550 37825559 3.0E-06 ACCGGAAGTG 10 V_GADP_01_M01258 TRANSFAC + 37825550 37825561 2.0E-06 CACTTCCGGTCG 12 V_JUNDM2_04_M02876 TRANSFAC + 37824563 37824578 4.0E-06 AAAGATGACTCACTGA 16 V_PET1_01_M02037 TRANSFAC - 37825550 37825559 3.0E-06 ACCGGAAGTG 10 V_IRF4_03_M02768 TRANSFAC + 37825464 37825478 1.0E-05 AGCTCCGAAACTACA 15 V_PBX1_05_M01967 TRANSFAC - 37825414 37825427 9.0E-06 GGTGACTGACATCT 14 V_ELK1_02_M00025 TRANSFAC - 37825549 37825562 6.0E-06 CCGACCGGAAGTGT 14 V_ATF3_Q6_M00513 TRANSFAC - 37825535 37825548 0.0E+00 TTCTGACGTCAACG 14 V_CETS1P54_01_M00032 TRANSFAC - 37825550 37825559 5.0E-06 ACCGGAAGTG 10 V_AP1_01_M00517 TRANSFAC - 37824565 37824577 3.0E-06 CAGTGAGTCATCT 13 V_CTCF_02_M01259 TRANSFAC - 37820773 37820792 2.0E-06 CTATAGCCACAGGATGGCAC 20 V_PEA3_02_M02066 TRANSFAC - 37825550 37825559 2.0E-06 ACCGGAAGTG 10 V_ERF_02_M02061 TRANSFAC - 37825550 37825559 3.0E-06 ACCGGAAGTG 10 V_SOX11_03_M02795 TRANSFAC + 37829653 37829669 1.0E-06 TAAGTAACAAAGGAGTT 17 V_CTCF_01_M01200 TRANSFAC - 37820771 37820790 5.0E-06 ATAGCCACAGGATGGCACCA 20 V_ISGF4G_04_M02875 TRANSFAC - 37820803 37820816 8.0E-06 TCAAAACACAACCT 14 V_PAX8_B_M00328 TRANSFAC + 37820840 37820857 9.0E-06 TCTCACATGCGTGGATTT 18 V_ER71_01_M01988 TRANSFAC - 37825550 37825559 5.0E-06 ACCGGAAGTG 10 V_NET_01_M01982 TRANSFAC - 37825550 37825559 3.0E-06 ACCGGAAGTG 10 V_CETS1P54_03_M01078 TRANSFAC - 37825547 37825562 9.0E-06 CCGACCGGAAGTGTTT 16 V_ER81_01_M01987 TRANSFAC - 37825550 37825559 3.0E-06 ACCGGAAGTG 10 V_TFIII_Q6_M00706 TRANSFAC - 37825601 37825609 6.0E-06 AGAGGGAGG 9 V_AP1_Q4_01_M00926 TRANSFAC - 37824567 37824574 1.0E-05 TGAGTCAT 8 V_ATF1_Q6_M00691 TRANSFAC + 37825535 37825545 5.0E-06 CGTTGACGTCA 11 V_ERM_02_M02069 TRANSFAC - 37825550 37825559 3.0E-06 ACCGGAAGTG 10 V_ALPHACP1_01_M00687 TRANSFAC - 37825332 37825342 2.0E-06 AAACCAATGAG 11 V_GABPBETA_Q3_M01876 TRANSFAC - 37825499 37825509 1.0E-06 AGCGGAAGTGA 11 V_ATF1_03_M02738 TRANSFAC + 37825534 37825549 9.0E-06 GCGTTGACGTCAGAAA 16 V_ESRRA_04_M02852 TRANSFAC - 37820809 37820825 1.0E-06 GACTAGGGGTCAAAACA 17 V_NFY_01_M00287 TRANSFAC - 37825329 37825344 3.0E-06 GTAAACCAATGAGATC 16 V_FRA1_Q5_M01267 TRANSFAC - 37824567 37824574 1.0E-05 TGAGTCAT 8 V_NRF2_01_M00108 TRANSFAC - 37825550 37825559 2.0E-06 ACCGGAAGTG 10 V_TBX15_02_M01264 TRANSFAC - 37825619 37825636 9.0E-06 AGGTGCAGAGGTGTGGGA 18 V_FOX_Q2_M00809 TRANSFAC + 37829672 37829684 4.0E-06 TGTTGTTTGCTTT 13 V_SAP1A_03_M02058 TRANSFAC - 37825550 37825559 2.0E-06 ACCGGAAGTG 10 V_CETS1_02_M02063 TRANSFAC - 37825550 37825559 3.0E-06 ACCGGAAGTG 10 V_HFH3_01_M00289 TRANSFAC + 37829672 37829684 4.0E-06 TGTTGTTTGCTTT 13 V_FOXJ2_01_M00422 TRANSFAC - 37829670 37829687 5.0E-06 ACCAAAGCAAACAACAGA 18 V_SOX4_01_M01308 TRANSFAC + 37829658 37829665 1.0E-05 AACAAAGG 8 V_SOX1_03_M02802 TRANSFAC + 37824576 37824591 3.0E-06 TGACAATTCAACAATT 16 V_HOMEZ_01_M01429 TRANSFAC - 37829631 37829647 6.0E-06 TTCAAATCGTTTACTTA 17 V_NET_02_M02060 TRANSFAC - 37825550 37825559 4.0E-06 ACCGGAAGTG 10 V_SOX2_Q6_M01272 TRANSFAC - 37829654 37829669 3.0E-06 AACTCCTTTGTTACTT 16 V_ERG_02_M01985 TRANSFAC - 37825550 37825559 2.0E-06 ACCGGAAGTG 10 V_PIT1_Q6_M00802 TRANSFAC - 37824535 37824552 2.0E-06 ACTTCCTTAATATCCACA 18 V_FREAC4_01_M00292 TRANSFAC + 37829629 37829644 8.0E-06 CTTAAGTAAACGATTT 16 V_BARX1_01_M01340 TRANSFAC - 37824581 37824596 7.0E-06 AGGACAATTGTTGAAT 16 V_ELK1_03_M01163 TRANSFAC - 37825550 37825560 1.0E-06 GACCGGAAGTG 11 V_ATF_B_M00338 TRANSFAC - 37825535 37825546 2.0E-06 CTGACGTCAACG 12 V_BRCA_01_M01082 TRANSFAC + 37829669 37829676 1.0E-05 TTCTGTTG 8 V_ER71_02_M02067 TRANSFAC - 37825550 37825559 3.0E-06 ACCGGAAGTG 10 V_ETV3_02_M02068 TRANSFAC - 37825550 37825559 2.0E-06 ACCGGAAGTG 10 V_NANOG_02_M01247 TRANSFAC + 37829651 37829670 4.0E-06 ACTAAGTAACAAAGGAGTTT 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.