Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

NKPD1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 284353 NTPase, KAP family P-loop domain containing 1 chr19 - 45662908 - 45668408 45663408 Transcription Factor Binding Sites   Download all TFBS in the NKPD1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 45665466 45665484 2.0E-06 TGGACACTAGGGGGAGCAG 19 NF-kappaB_MA0061.1 JASPAR + 45668039 45668048 9.0E-06 GGGGATTCCC 10 Tp53_p53l_DBD_dimeric_18_1 SELEX + 45668161 45668178 7.0E-06 ACAGGTCTTTGCACAAGA 18 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX - 45667992 45668003 7.0E-06 AGCTTTCCCACA 12 NFKB1_MA0105.1 JASPAR + 45668038 45668048 9.0E-06 GGGGGATTCCC 11 NFKB1_MA0105.1 JASPAR + 45668039 45668049 0.0E+00 GGGGATTCCCC 11 NFKB1_MA0105.1 JASPAR - 45668039 45668049 1.0E-06 GGGGAATCCCC 11 NFKB2_NFAT_DBD_dimeric_13_1 SELEX + 45668038 45668050 0.0E+00 GGGGGATTCCCCT 13 NFKB2_NFAT_DBD_dimeric_13_1 SELEX - 45668038 45668050 0.0E+00 AGGGGAATCCCCC 13 SP1_MA0079.2 JASPAR - 45667466 45667475 9.0E-06 CCCCTCCTCC 10 CTCF_C2H2_full_monomeric_17_1 SELEX - 45665467 45665483 3.0E-06 TGCTCCCCCTAGTGTCC 17 MZF1_5-13_MA0057.1 JASPAR + 45667469 45667478 4.0E-06 GGAGGGGGAA 10 NFKB1_NFAT_DBD_dimeric_13_1 SELEX + 45668038 45668050 0.0E+00 GGGGGATTCCCCT 13 NFKB1_NFAT_DBD_dimeric_13_1 SELEX - 45668038 45668050 0.0E+00 AGGGGAATCCCCC 13 HNF4A_MA0114.1 JASPAR + 45667447 45667459 8.0E-06 AGGCCAGAGGCCA 13 V_ZSCAN4_03_M02838 TRANSFAC - 45665947 45665963 8.0E-06 GCGATGTGCACAGAACG 17 V_OCT1_Q5_01_M00930 TRANSFAC - 45665398 45665408 2.0E-06 TCATTTACATT 11 V_P50P50_Q3_M01223 TRANSFAC - 45668038 45668050 1.0E-06 AGGGGAATCCCCC 13 V_SP1_03_M02281 TRANSFAC - 45667466 45667475 9.0E-06 CCCCTCCTCC 10 V_P50RELAP65_Q5_01_M01224 TRANSFAC + 45668040 45668051 7.0E-06 GGGATTCCCCTC 12 V_HNF4A_03_M02220 TRANSFAC + 45667447 45667459 8.0E-06 AGGCCAGAGGCCA 13 V_SP1_02_M01303 TRANSFAC - 45664310 45664320 8.0E-06 GGGGCGGGGAC 11 V_TAL1_Q6_M00993 TRANSFAC + 45668133 45668142 1.0E-06 TCCATCTGCT 10 V_MAZ_Q6_01_M02023 TRANSFAC + 45667463 45667476 3.0E-06 GGAGGAGGAGGGGG 14 V_MATH1_Q2_M01716 TRANSFAC + 45668107 45668116 9.0E-06 CCACCTGGTG 10 V_ASCL2_03_M02737 TRANSFAC - 45664217 45664233 2.0E-06 TGTGGCAGCTGCTCGTG 17 V_PAX6_Q2_M00979 TRANSFAC - 45660177 45660190 4.0E-06 CAGAGCTGGAATTA 14 V_SP1SP3_Q4_M01219 TRANSFAC - 45667466 45667476 1.0E-05 CCCCCTCCTCC 11 V_ZBRK1_01_M01105 TRANSFAC + 45665476 45665490 0.0E+00 GGGGAGCAGGCGTTT 15 V_NFKAPPAB50_01_M00051 TRANSFAC + 45668039 45668048 2.0E-06 GGGGATTCCC 10 V_CTCF_02_M01259 TRANSFAC + 45665463 45665482 4.0E-06 TGCTGGACACTAGGGGGAGC 20 V_CTCF_01_M01200 TRANSFAC + 45665465 45665484 5.0E-06 CTGGACACTAGGGGGAGCAG 20 V_MZF1_02_M00084 TRANSFAC + 45667466 45667478 2.0E-06 GGAGGAGGGGGAA 13 V_OCT_Q6_M00795 TRANSFAC - 45665398 45665408 4.0E-06 TCATTTACATT 11 V_GLI3_01_M01596 TRANSFAC + 45660199 45660209 5.0E-06 CTGGGTGGCCC 11 V_TCFE2A_03_M02823 TRANSFAC - 45668102 45668118 6.0E-06 ATCACCAGGTGGGAGCA 17 V_FPM315_01_M01587 TRANSFAC + 45667463 45667474 4.0E-06 GGAGGAGGAGGG 12 V_ASCL2_04_M02841 TRANSFAC + 45664308 45664323 7.0E-06 CTGTCCCCGCCCCTTC 16 V_ZFP281_01_M01597 TRANSFAC + 45667842 45667852 9.0E-06 TGGGGGTAGGG 11 V_NFKAPPAB_01_M00054 TRANSFAC + 45668039 45668048 9.0E-06 GGGGATTCCC 10 V_SMAD3_Q6_M00701 TRANSFAC - 45665521 45665529 1.0E-05 TGTCTGCCT 9 V_SP1_Q2_01_M00933 TRANSFAC + 45664312 45664321 7.0E-06 CCCCGCCCCT 10 V_SP1_Q4_01_M00932 TRANSFAC - 45664310 45664322 5.0E-06 AAGGGGCGGGGAC 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.