Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C18orf62 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 284274 small integral membrane protein 21 chr18 - 73139089 - 73144589 73139589 Transcription Factor Binding Sites   Download all TFBS in the C18orf62 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 73141981 73141996 2.0E-06 ATGGATAACTAATGAG 16 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX - 73142119 73142128 8.0E-06 ATCATAAAAA 10 HOXA10_homeodomain_DBD_monomeric_12_1 SELEX - 73142118 73142129 3.0E-06 CATCATAAAAAT 12 HNF1B_MA0153.1 JASPAR - 73142246 73142257 1.0E-05 CCACTGATTAAT 12 EWSR1-FLI1_MA0149.1 JASPAR + 73134590 73134607 8.0E-06 AAAAGGAGTGAAGGTAGA 18 STAT1_MA0137.2 JASPAR + 73141918 73141932 8.0E-06 TGTTTCCTATAAACT 15 HOXD11_homeodomain_DBD_monomeric_10_1 SELEX - 73142119 73142128 3.0E-06 ATCATAAAAA 10 Creb5_bZIP_DBD_dimeric_12_1 SELEX - 73142123 73142134 8.0E-06 CATGACATCATA 12 JDP2_bZIP_full_dimeric_12_1 SELEX - 73142123 73142134 8.0E-06 CATGACATCATA 12 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX - 73142119 73142128 1.0E-06 ATCATAAAAA 10 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX + 73142237 73142254 9.0E-06 AGGATTAAGATTAATCAG 18 SRY_MA0084.1 JASPAR + 73142098 73142106 5.0E-06 TTTAACAAT 9 POU1F1_POU_DBD_monomeric_17_1 SELEX + 73141978 73141994 6.0E-06 GACATGGATAACTAATG 17 Hoxa11_homeodomain_DBD_monomeric_12_1 SELEX - 73142118 73142129 7.0E-06 CATCATAAAAAT 12 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX - 73142119 73142128 2.0E-06 ATCATAAAAA 10 Hoxd9_homeodomain_DBD_monomeric_9_2 SELEX - 73142120 73142128 8.0E-06 ATCATAAAA 9 HMBOX1_homeodomain_DBD_monomeric_10_1 SELEX + 73142272 73142281 6.0E-06 CTTAGTTAAA 10 NFE2L2_MA0150.1 JASPAR - 73142212 73142222 9.0E-06 GTGACTCAGCC 11 V_BTEB3_Q5_M01865 TRANSFAC - 73142159 73142171 1.0E-05 GTGTGGGAGGAGC 13 V_ZFP410_04_M02936 TRANSFAC - 73134753 73134769 6.0E-06 TCCTTCCTCCCCATTCT 17 V_HNF1_02_M01379 TRANSFAC - 73142270 73142286 6.0E-06 ATTCATTTAACTAAGAC 17 V_HNF1_02_M01379 TRANSFAC + 73142271 73142287 8.0E-06 TCTTAGTTAAATGAATC 17 V_MYB_03_M02883 TRANSFAC - 73142146 73142161 4.0E-06 AGCCCAACTGACATAA 16 V_ETS_B_M00340 TRANSFAC + 73134726 73134739 8.0E-06 AACAGGATGTGGTT 14 V_SOX5_01_M00042 TRANSFAC + 73142099 73142108 7.0E-06 TTAACAATGC 10 V_MEIS1AHOXA9_01_M00420 TRANSFAC - 73141923 73141936 6.0E-06 TGAGAGTTTATAGG 14 V_JUNDM2_03_M02772 TRANSFAC - 73142121 73142136 9.0E-06 GGCATGACATCATAAA 16 V_AREB6_04_M00415 TRANSFAC - 73134722 73134730 8.0E-06 CTGTTTCTA 9 V_CMYB_Q5_M01821 TRANSFAC - 73142149 73142159 5.0E-06 CCCAACTGACA 11 V_MYBL1_04_M02884 TRANSFAC - 73142147 73142161 7.0E-06 AGCCCAACTGACATA 15 V_ETS_Q4_M00771 TRANSFAC - 73134728 73134739 1.0E-06 AACCACATCCTG 12 V_HOXB9_01_M01426 TRANSFAC - 73142116 73142131 6.0E-06 GACATCATAAAAATCA 16 V_HNF1B_04_M02266 TRANSFAC - 73142246 73142257 1.0E-05 CCACTGATTAAT 12 V_PAX8_B_M00328 TRANSFAC - 73141951 73141968 7.0E-06 TCACAAATGCGTTAGTCA 18 V_SOX17_04_M02904 TRANSFAC - 73142276 73142292 8.0E-06 GAGCAGATTCATTTAAC 17 V_CETS1P54_03_M01078 TRANSFAC + 73134724 73134739 9.0E-06 GAAACAGGATGTGGTT 16 V_VJUN_01_M00036 TRANSFAC + 73142121 73142136 6.0E-06 TTTATGATGTCATGCC 16 V_TCF1_06_M02815 TRANSFAC - 73142270 73142286 1.0E-06 ATTCATTTAACTAAGAC 17 V_HNF1B_01_M01425 TRANSFAC - 73142269 73142285 5.0E-06 TTCATTTAACTAAGACT 17 V_ETS1_B_M00339 TRANSFAC + 73134727 73134741 5.0E-06 ACAGGATGTGGTTGT 15 V_BBX_03_M02739 TRANSFAC + 73142274 73142288 2.0E-06 TAGTTAAATGAATCT 15 V_BBX_03_M02739 TRANSFAC - 73142274 73142288 5.0E-06 AGATTCATTTAACTA 15 V_EWSR1FLI1_01_M02252 TRANSFAC + 73134590 73134607 8.0E-06 AAAAGGAGTGAAGGTAGA 18 V_NFE2L2_01_M02263 TRANSFAC - 73142212 73142222 9.0E-06 GTGACTCAGCC 11 V_HOXA10_01_M01464 TRANSFAC - 73142116 73142131 1.0E-06 GACATCATAAAAATCA 16 V_OTX3_01_M01403 TRANSFAC + 73142232 73142248 9.0E-06 TTTGTAGGATTAAGATT 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.