Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CXCR3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 2833 chemokine (C-X-C motif) receptor 3 chrX - 70837867 - 70843367 70838367 Transcription Factor Binding Sites   Download all TFBS in the CXCR3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX20_TBX_full_monomeric_11_1 SELEX - 70842627 70842637 2.0E-06 GAGGTGTGAAA 11 SP8_C2H2_DBD_monomeric_12_1 SELEX + 70837809 70837820 3.0E-06 ACCACGCCCCCC 12 PAX6_PAX_DBD_monomeric_19_1 SELEX + 70839238 70839256 4.0E-06 TTATCTGCATGGATGATTC 19 SP3_C2H2_DBD_monomeric_11_1 SELEX + 70837809 70837819 4.0E-06 ACCACGCCCCC 11 ESRRA_nuclearreceptor_DBD_dimeric_19_1 SELEX - 70838673 70838691 6.0E-06 AAAGATCAACTCAAGGCCA 19 TBR1_TBX_DBD_monomeric_10_1 SELEX + 70842569 70842578 6.0E-06 AGGTGCGAAA 10 TBR1_TBX_DBD_monomeric_10_1 SELEX - 70842627 70842636 1.0E-06 AGGTGTGAAA 10 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 70837809 70837819 2.0E-06 ACCACGCCCCC 11 KLF14_C2H2_DBD_monomeric_14_1 SELEX + 70837808 70837821 7.0E-06 CACCACGCCCCCCA 14 TBX1_TBX_DBD_dimeric_23_1 SELEX - 70842627 70842649 5.0E-06 AACCACAGCCCAGAGGTGTGAAA 23 TBX20_TBX_DBD_dimeric_19_1 SELEX + 70842569 70842587 2.0E-06 AGGTGCGAAATGTGCACCT 19 TBX20_TBX_DBD_dimeric_19_1 SELEX - 70842569 70842587 4.0E-06 AGGTGCACATTTCGCACCT 19 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 70842858 70842868 1.0E-05 AGCCCCAGGCT 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 70842858 70842868 9.0E-06 AGCCCCAGGCT 11 TBX1_TBX_DBD_dimeric_19_1 SELEX + 70842569 70842587 1.0E-06 AGGTGCGAAATGTGCACCT 19 TBX1_TBX_DBD_dimeric_19_1 SELEX - 70842569 70842587 1.0E-06 AGGTGCACATTTCGCACCT 19 RARG_nuclearreceptor_full_dimeric_18_1 SELEX - 70838433 70838450 2.0E-06 GAGGTCTGGTAGAGGTAA 18 EOMES_TBX_DBD_monomeric_13_1 SELEX + 70842568 70842580 3.0E-06 AAGGTGCGAAATG 13 EOMES_TBX_DBD_monomeric_13_1 SELEX - 70842625 70842637 0.0E+00 GAGGTGTGAAAAA 13 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX + 70839371 70839384 4.0E-06 AAGTGAATAAGCTA 14 Rarb_nuclearreceptor_DBD_dimeric_17_1 SELEX - 70838673 70838689 3.0E-06 AGATCAACTCAAGGCCA 17 SP1_MA0079.2 JASPAR + 70842603 70842612 3.0E-06 CCCCTCCCCC 10 TBR1_TBX_full_monomeric_11_1 SELEX + 70842568 70842578 3.0E-06 AAGGTGCGAAA 11 TBR1_TBX_full_monomeric_11_1 SELEX - 70842627 70842637 0.0E+00 GAGGTGTGAAA 11 SP4_C2H2_full_monomeric_17_1 SELEX + 70837806 70837822 1.0E-05 GTCACCACGCCCCCCAA 17 SP1_C2H2_DBD_monomeric_11_1 SELEX + 70837809 70837819 1.0E-06 ACCACGCCCCC 11 RFX4_RFX_DBD_dimeric_15_1 SELEX + 70842323 70842337 8.0E-06 GGTTGCTGTGTTACG 15 TBX21_TBX_full_monomeric_10_1 SELEX - 70842628 70842637 3.0E-06 GAGGTGTGAA 10 TBX15_TBX_DBD_dimeric_19_1 SELEX + 70842569 70842587 0.0E+00 AGGTGCGAAATGTGCACCT 19 TBX15_TBX_DBD_dimeric_19_1 SELEX - 70842569 70842587 2.0E-06 AGGTGCACATTTCGCACCT 19 TBX2_TBX_full_monomeric_11_1 SELEX + 70842568 70842578 9.0E-06 AAGGTGCGAAA 11 TBX2_TBX_full_monomeric_11_1 SELEX - 70842627 70842637 1.0E-06 GAGGTGTGAAA 11 INSM1_MA0155.1 JASPAR + 70838548 70838559 9.0E-06 TGGCTGGGGGCA 12 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 70842858 70842868 8.0E-06 AGCCCCAGGCT 11 TBX21_TBX_full_dimeric_19_1 SELEX + 70842629 70842647 5.0E-06 TCACACCTCTGGGCTGTGG 19 TBX21_TBX_full_dimeric_19_1 SELEX - 70842629 70842647 0.0E+00 CCACAGCCCAGAGGTGTGA 19 TBX20_TBX_DBD_monomeric_15_1 SELEX + 70842565 70842579 5.0E-06 GTCAAGGTGCGAAAT 15 TBX20_TBX_DBD_monomeric_15_1 SELEX - 70842626 70842640 2.0E-06 CCAGAGGTGTGAAAA 15 RORA_nuclearreceptor_DBD_dimeric_20_1 SELEX - 70838673 70838692 1.0E-06 CAAAGATCAACTCAAGGCCA 20 RUNX1_MA0002.2 JASPAR + 70842640 70842650 2.0E-06 GGCTGTGGTTT 11 TBX1_TBX_DBD_dimeric_20_1 SELEX - 70842617 70842636 3.0E-06 AGGTGTGAAAAAAAGAAAAA 20 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 70842858 70842868 6.0E-06 AGCCCCAGGCT 11 IRF2_MA0051.1 JASPAR + 70839124 70839141 6.0E-06 GGAAAAAGAAAGGGAACT 18 V_SPI1_01_M01203 TRANSFAC + 70839129 70839145 8.0E-06 AAGAAAGGGAACTACCA 17 V_E2A_Q6_01_M02088 TRANSFAC + 70842430 70842442 8.0E-06 GGACAGCTGCCTG 13 V_TCF3_01_M01594 TRANSFAC + 70842617 70842629 3.0E-06 TTTTTCTTTTTTT 13 V_AML_Q6_M00769 TRANSFAC + 70842638 70842652 6.0E-06 TGGGCTGTGGTTTGA 15 V_TBX15_01_M01263 TRANSFAC + 70842569 70842587 1.0E-06 AGGTGCGAAATGTGCACCT 19 V_TBX15_01_M01263 TRANSFAC - 70842569 70842587 1.0E-06 AGGTGCACATTTCGCACCT 19 V_AML3_Q6_M01856 TRANSFAC - 70838358 70838365 1.0E-05 AACCACAA 8 V_EOMES_03_M02747 TRANSFAC + 70842565 70842581 3.0E-06 GTCAAGGTGCGAAATGT 17 V_EOMES_03_M02747 TRANSFAC - 70842624 70842640 0.0E+00 CCAGAGGTGTGAAAAAA 17 V_TBR2_01_M01774 TRANSFAC - 70842628 70842636 3.0E-06 AGGTGTGAA 9 V_IRF_Q6_01_M00972 TRANSFAC + 70839125 70839135 6.0E-06 GAAAAAGAAAG 11 V_IRF_Q6_01_M00972 TRANSFAC - 70842618 70842628 6.0E-06 AAAAAAGAAAA 11 V_IRF2_Q6_M01882 TRANSFAC + 70839123 70839138 1.0E-06 GGGAAAAAGAAAGGGA 16 V_IRF2_Q6_M01882 TRANSFAC - 70842615 70842630 4.0E-06 GAAAAAAAGAAAAAAA 16 V_HNF4ALPHA_Q6_M00638 TRANSFAC - 70837165 70837177 4.0E-06 CTGAACTTCGACC 13 V_IRF3_05_M02767 TRANSFAC + 70839129 70839142 7.0E-06 AAGAAAGGGAACTA 14 V_SP1_03_M02281 TRANSFAC + 70842603 70842612 3.0E-06 CCCCTCCCCC 10 V_PU1_Q4_M01172 TRANSFAC + 70842611 70842629 9.0E-06 CCTGTTTTTTTCTTTTTTT 19 V_TCFAP2E_04_M02926 TRANSFAC - 70842614 70842627 4.0E-06 AAAAAGAAAAAAAC 14 V_LHX8_01_M01440 TRANSFAC - 70839108 70839124 5.0E-06 CCCACTGATTAGCAGGG 17 V_ETS_Q4_M00771 TRANSFAC - 70838383 70838394 9.0E-06 TCCCACTTCCTC 12 V_SPI1_03_M02078 TRANSFAC + 70838382 70838391 1.0E-06 AGAGGAAGTG 10 V_TBX18_01_M01262 TRANSFAC + 70842569 70842587 0.0E+00 AGGTGCGAAATGTGCACCT 19 V_TBX18_01_M01262 TRANSFAC - 70842569 70842587 2.0E-06 AGGTGCACATTTCGCACCT 19 V_RUNX1_01_M02257 TRANSFAC + 70842640 70842650 2.0E-06 GGCTGTGGTTT 11 V_AML2_01_M01759 TRANSFAC - 70838358 70838365 1.0E-05 AACCACAA 8 V_SP1_Q6_M00196 TRANSFAC - 70842601 70842613 8.0E-06 AGGGGGAGGGGTG 13 V_IRF_Q6_M00772 TRANSFAC - 70839125 70839139 1.0E-06 TTCCCTTTCTTTTTC 15 V_IRF_Q6_M00772 TRANSFAC + 70842614 70842628 5.0E-06 GTTTTTTTCTTTTTT 15 V_PAX6_Q2_M00979 TRANSFAC - 70841682 70841695 7.0E-06 CAGGGCTGGAACTC 14 V_OCT1_04_M00138 TRANSFAC - 70838681 70838703 4.0E-06 TTACAATCATGCAAAGATCAACT 23 V_MUSCLE_INI_B_M00321 TRANSFAC - 70838317 70838337 0.0E+00 GCAGCACACCACCCAGCAGCC 21 V_GRE_C_M00205 TRANSFAC + 70838395 70838410 8.0E-06 GTTTCAGGCAGTTCTC 16 V_SPIB_01_M01204 TRANSFAC + 70839129 70839145 5.0E-06 AAGAAAGGGAACTACCA 17 V_TCF7_03_M02817 TRANSFAC - 70839361 70839377 9.0E-06 TTCACTTAAAAGAAACT 17 V_STAT4_Q5_M02117 TRANSFAC - 70839363 70839372 2.0E-06 TTAAAAGAAA 10 V_ISGF3G_03_M02771 TRANSFAC - 70839359 70839373 6.0E-06 CTTAAAAGAAACTGA 15 V_BRACH_01_M00150 TRANSFAC + 70842557 70842580 7.0E-06 CACCTGTGGTCAAGGTGCGAAATG 24 V_SP1_01_M00008 TRANSFAC - 70837809 70837818 1.0E-05 GGGGCGTGGT 10 V_TBX5_01_M01019 TRANSFAC - 70842627 70842638 2.0E-06 AGAGGTGTGAAA 12 V_INSM1_01_M02268 TRANSFAC + 70838548 70838559 9.0E-06 TGGCTGGGGGCA 12 V_ELK1_01_M00007 TRANSFAC + 70842518 70842533 4.0E-06 TGAGGAGGAAGTTAGT 16 V_ELF1_Q6_M00746 TRANSFAC - 70842753 70842764 7.0E-06 GGAGGAGGAAAT 12 V_MTF1_06_M02882 TRANSFAC - 70842615 70842628 0.0E+00 AAAAAAGAAAAAAA 14 V_GABPBETA_Q3_M01876 TRANSFAC + 70838382 70838392 1.0E-05 AGAGGAAGTGG 11 V_EOMES_04_M02851 TRANSFAC + 70837047 70837062 6.0E-06 AGGAAGGTGTCGGTGC 16 V_FOXJ3_06_M02855 TRANSFAC + 70833668 70833684 7.0E-06 GTTGCCACAACAAATTA 17 V_MYOGNF1_01_M00056 TRANSFAC + 70838352 70838380 3.0E-06 TGGTGCTTGTGGTTGGAAACCTGCAGTCA 29 V_NCX_01_M00484 TRANSFAC - 70833678 70833687 2.0E-06 TGGTAATTTG 10 V_NANOG_01_M01123 TRANSFAC + 70842747 70842758 1.0E-06 AGGGCCATTTCC 12 V_SPIC_02_M02077 TRANSFAC + 70838382 70838391 3.0E-06 AGAGGAAGTG 10 V_STAT1STAT1_Q3_M01212 TRANSFAC - 70842932 70842944 2.0E-06 ATTTCACGTAAGA 13 V_E47_01_M00002 TRANSFAC - 70842428 70842442 9.0E-06 CAGGCAGCTGTCCCC 15 V_ETS1_B_M00339 TRANSFAC + 70842521 70842535 7.0E-06 GGAGGAAGTTAGTCA 15 V_ZFP281_01_M01597 TRANSFAC - 70842603 70842613 3.0E-06 AGGGGGAGGGG 11 V_MEF3_B_M00319 TRANSFAC - 70842511 70842523 3.0E-06 TCCTCAGGCTTCC 13 V_IRF1_Q6_01_M01881 TRANSFAC - 70839124 70839137 9.0E-06 CCCTTTCTTTTTCC 14 V_IRF1_Q6_01_M01881 TRANSFAC + 70842616 70842629 8.0E-06 TTTTTTCTTTTTTT 14 V_TBX22_01_M01195 TRANSFAC + 70842569 70842587 0.0E+00 AGGTGCGAAATGTGCACCT 19 V_TBX22_01_M01195 TRANSFAC - 70842569 70842587 0.0E+00 AGGTGCACATTTCGCACCT 19 V_SRF_06_M02916 TRANSFAC - 70842613 70842629 6.0E-06 AAAAAAAGAAAAAAACA 17 V_SRF_06_M02916 TRANSFAC - 70842614 70842630 4.0E-06 GAAAAAAAGAAAAAAAC 17 V_SRF_06_M02916 TRANSFAC - 70842616 70842632 2.0E-06 GTGAAAAAAAGAAAAAA 17 V_PAX4_02_M00377 TRANSFAC + 70833676 70833686 6.0E-06 AACAAATTACC 11 V_ARP1_01_M00155 TRANSFAC + 70843102 70843117 4.0E-06 TGCAGCTCTGAGCCCT 16 V_AP2ALPHA_03_M01047 TRANSFAC + 70842856 70842870 1.0E-05 CCAGCCCCAGGCTGT 15 V_AP2ALPHA_03_M01047 TRANSFAC - 70842856 70842870 1.0E-05 ACAGCCTGGGGCTGG 15 V_SP1_Q4_01_M00932 TRANSFAC - 70842601 70842613 8.0E-06 AGGGGGAGGGGTG 13 V_SMAD1_01_M01590 TRANSFAC + 70839126 70839137 3.0E-06 AAAAAGAAAGGG 12 V_SMAD1_01_M01590 TRANSFAC - 70842616 70842627 3.0E-06 AAAAAGAAAAAA 12 V_SPIB_03_M02076 TRANSFAC + 70838382 70838391 3.0E-06 AGAGGAAGTG 10 V_NANOG_02_M01247 TRANSFAC + 70839122 70839141 8.0E-06 GGGGAAAAAGAAAGGGAACT 20 V_NANOG_02_M01247 TRANSFAC - 70842612 70842631 0.0E+00 TGAAAAAAAGAAAAAAACAG 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.