Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

FOXR1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 283150 chr11 + 118837416 - 118847416 0 Transcription Factor Binding Sites   Download all TFBS in the FOXR1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFIA_NFI_full_dimeric_15_1 SELEX - 118847206 118847220 3.0E-06 TTGGCTGCTGGCCAG 15 POU3F4_POU_DBD_monomeric_11_1 SELEX + 118846792 118846802 5.0E-06 TGCATAAATGA 11 NFIX_NFI_full_dimeric_15_2 SELEX + 118847206 118847220 7.0E-06 CTGGCCAGCAGCCAA 15 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX - 118846519 118846536 2.0E-06 AAGGTGATAGGATCAATG 18 RUNX3_RUNX_full_monomeric_10_1 SELEX + 118846651 118846660 7.0E-06 AAACCACAAC 10 RUNX2_RUNX_DBD_monomeric_9_1 SELEX + 118846651 118846659 8.0E-06 AAACCACAA 9 Lhx3_MA0135.1 JASPAR + 118846570 118846582 5.0E-06 TATTTAACTAACT 13 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX - 118846782 118846790 9.0E-06 CACATAAAA 9 NFIB_NFI_full_dimeric_15_1 SELEX - 118847206 118847220 4.0E-06 TTGGCTGCTGGCCAG 15 RUNX1_MA0002.2 JASPAR - 118846651 118846661 3.0E-06 GGTTGTGGTTT 11 THRB_nuclearreceptor_DBD_dimeric_19_1 SELEX + 118846718 118846736 2.0E-06 GTGACCTCAGTGGGATCAT 19 THRB_nuclearreceptor_DBD_dimeric_19_1 SELEX - 118846718 118846736 3.0E-06 ATGATCCCACTGAGGTCAC 19 V_GEN_INI_B_M00315 TRANSFAC - 118846797 118846804 1.0E-05 CCTCATTT 8 V_AML_Q6_M00769 TRANSFAC - 118846649 118846663 2.0E-06 AGGGTTGTGGTTTGG 15 V_CDX2_Q5_01_M01659 TRANSFAC + 118846792 118846802 8.0E-06 TGCATAAATGA 11 V_ISL1_Q6_M01127 TRANSFAC - 118846599 118846607 4.0E-06 GCGTAATAT 9 V_NF1_Q6_01_M00806 TRANSFAC + 118847206 118847222 3.0E-06 CTGGCCAGCAGCCAAGA 17 V_HNF1_02_M01379 TRANSFAC + 118846567 118846583 1.0E-06 CCTTATTTAACTAACTT 17 V_AML3_Q6_M01856 TRANSFAC + 118846652 118846659 1.0E-05 AACCACAA 8 V_GEN_INI3_B_M00314 TRANSFAC - 118846797 118846804 1.0E-05 CCTCATTT 8 V_RUNX1_01_M02257 TRANSFAC - 118846651 118846661 3.0E-06 GGTTGTGGTTT 11 V_GATA3_05_M02859 TRANSFAC + 118846516 118846537 2.0E-06 GTCCATTGATCCTATCACCTTT 22 V_TEF_Q6_M00672 TRANSFAC - 118846569 118846580 7.0E-06 TTAGTTAAATAA 12 V_AML2_01_M01759 TRANSFAC + 118846652 118846659 1.0E-05 AACCACAA 8 V_LMO2COM_01_M00277 TRANSFAC - 118847200 118847211 6.0E-06 GGCCAGGTGCAG 12 V_GATA4_Q3_M00632 TRANSFAC + 118847220 118847231 7.0E-06 AGATTTAAGGCA 12 V_ZFP105_04_M02931 TRANSFAC + 118846541 118846557 8.0E-06 CTGTTTCAATCACTTGA 17 V_T3R_01_M00239 TRANSFAC - 118846714 118846729 6.0E-06 CACTGAGGTCACCAGT 16 V_CAAT_C_M00200 TRANSFAC + 118846648 118846672 6.0E-06 GCCAAACCACAACCCTGACTAAATC 25 V_CPHX_01_M01478 TRANSFAC - 118846520 118846533 3.0E-06 GTGATAGGATCAAT 14 V_GEN_INI2_B_M00313 TRANSFAC - 118846797 118846804 1.0E-05 CCTCATTT 8 V_TCF1_06_M02815 TRANSFAC + 118846567 118846583 2.0E-06 CCTTATTTAACTAACTT 17 V_LMX1B_01_M01363 TRANSFAC + 118846568 118846584 8.0E-06 CTTATTTAACTAACTTG 17 V_LXRA_RXRA_Q3_M00647 TRANSFAC - 118846714 118846728 2.0E-06 ACTGAGGTCACCAGT 15 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 118846651 118846658 1.0E-05 TGTGGTTT 8 V_CTF1_01_M01196 TRANSFAC - 118847206 118847219 9.0E-06 TGGCTGCTGGCCAG 14 V_CTF1_01_M01196 TRANSFAC + 118847207 118847220 7.0E-06 TGGCCAGCAGCCAA 14 V_SOX5_04_M02910 TRANSFAC + 118846698 118846712 6.0E-06 AACCATAATTCAGTG 15 TLX1_NFIC_MA0119.1 JASPAR - 118847206 118847219 9.0E-06 TGGCTGCTGGCCAG 14 TLX1_NFIC_MA0119.1 JASPAR + 118847207 118847220 7.0E-06 TGGCCAGCAGCCAA 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.