Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

AMT Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 275 aminomethyltransferase chr3 - 49459611 - 49465111 49460111 Transcription Factor Binding Sites   Download all TFBS in the AMT promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP8_C2H2_DBD_monomeric_12_1 SELEX - 49459999 49460010 4.0E-06 CCCACGCCCCCT 12 HSF2_HSF_DBD_trimeric_13_1 SELEX - 49460196 49460208 4.0E-06 TTCCAGAACTTTG 13 MESP1_bHLH_DBD_dimeric_10_1 SELEX - 49458611 49458620 2.0E-06 AACACCTGTA 10 SP3_C2H2_DBD_monomeric_11_1 SELEX - 49460000 49460010 4.0E-06 CCCACGCCCCC 11 Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX + 49460191 49460204 8.0E-06 AGGGTCAAAGTTCT 14 Tp53_p53l_DBD_dimeric_18_1 SELEX - 49455138 49455155 6.0E-06 ACAGGTACTGTGACTAGT 18 THRA_nuclearreceptor_FL_dimeric_18_1 SELEX + 49455462 49455479 3.0E-06 AGGTCCTTATGAGGTCCT 18 THRA_nuclearreceptor_FL_dimeric_18_1 SELEX - 49455462 49455479 4.0E-06 AGGACCTCATAAGGACCT 18 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 49460000 49460010 6.0E-06 CCCACGCCCCC 11 NHLH1_MA0048.1 JASPAR - 49460523 49460534 6.0E-06 ACTCAGCTGCTT 12 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 49459998 49460011 6.0E-06 GCCCACGCCCCCTT 14 FOXL1_forkhead_full_dimeric_13_1 SELEX - 49460391 49460403 9.0E-06 GATCAATAAATAC 13 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX + 49460191 49460204 3.0E-06 AGGGTCAAAGTTCT 14 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX + 49460191 49460204 6.0E-06 AGGGTCAAAGTTCT 14 Tcfap2a_TFAP_DBD_dimeric_13_1 SELEX + 49460012 49460024 6.0E-06 AGCCCCAAGGGCA 13 Tcfap2a_TFAP_DBD_dimeric_13_1 SELEX - 49460012 49460024 1.0E-06 TGCCCTTGGGGCT 13 TFAP2C_TFAP_full_dimeric_13_1 SELEX + 49460012 49460024 3.0E-06 AGCCCCAAGGGCA 13 TFAP2C_TFAP_full_dimeric_13_1 SELEX - 49460012 49460024 5.0E-06 TGCCCTTGGGGCT 13 RARG_nuclearreceptor_full_dimeric_18_1 SELEX + 49460253 49460270 6.0E-06 AAGGTCAAGTGGGGGTGG 18 ONECUT1_CUT_full_monomeric_14_1 SELEX - 49460394 49460407 5.0E-06 GTAAGATCAATAAA 14 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 49460392 49460402 4.0E-06 ATCAATAAATA 11 TCF4_bHLH_full_dimeric_10_1 SELEX - 49458611 49458620 1.0E-06 AACACCTGTA 10 FIGLA_bHLH_DBD_dimeric_10_1 SELEX - 49458611 49458620 2.0E-06 AACACCTGTA 10 SP1_MA0079.2 JASPAR - 49455123 49455132 3.0E-06 CCCCTCCCCC 10 ONECUT2_CUT_DBD_monomeric_14_1 SELEX - 49460394 49460407 4.0E-06 GTAAGATCAATAAA 14 SP4_C2H2_full_monomeric_17_1 SELEX - 49459997 49460013 7.0E-06 CTGCCCACGCCCCCTTC 17 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX + 49460191 49460204 4.0E-06 AGGGTCAAAGTTCT 14 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 49460392 49460402 4.0E-06 ATCAATAAATA 11 SCRT1_C2H2_DBD_monomeric_15_1 SELEX - 49458643 49458657 1.0E-05 ATTCAACATGTGGTC 15 TFAP2A_TFAP_DBD_dimeric_13_1 SELEX + 49460012 49460024 4.0E-06 AGCCCCAAGGGCA 13 TFAP2A_TFAP_DBD_dimeric_13_1 SELEX - 49460012 49460024 2.0E-06 TGCCCTTGGGGCT 13 TFAP2B_TFAP_DBD_dimeric_13_1 SELEX + 49460012 49460024 3.0E-06 AGCCCCAAGGGCA 13 TFAP2B_TFAP_DBD_dimeric_13_1 SELEX - 49460012 49460024 1.0E-06 TGCCCTTGGGGCT 13 HNF4A_MA0114.1 JASPAR + 49460192 49460204 2.0E-06 GGGTCAAAGTTCT 13 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX - 49460265 49460275 8.0E-06 CTTCCCCACCC 11 RORA_nuclearreceptor_DBD_dimeric_20_1 SELEX + 49460251 49460270 9.0E-06 GTAAGGTCAAGTGGGGGTGG 20 HNF4A_nuclearreceptor_full_dimeric_14_1 SELEX + 49460191 49460204 1.0E-06 AGGGTCAAAGTTCT 14 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 49460392 49460404 2.0E-06 AGATCAATAAATA 13 RXRA_nuclearreceptor_full_dimeric_14_1 SELEX + 49460191 49460204 4.0E-06 AGGGTCAAAGTTCT 14 RREB1_MA0073.1 JASPAR + 49455307 49455326 8.0E-06 TCACACATCAACCCCACACG 20 ONECUT3_CUT_DBD_monomeric_14_1 SELEX - 49460394 49460407 3.0E-06 GTAAGATCAATAAA 14 TCF3_bHLH_DBD_dimeric_10_1 SELEX - 49458611 49458620 1.0E-06 AACACCTGTA 10 V_CDX2_Q5_01_M01659 TRANSFAC - 49460391 49460401 3.0E-06 TCAATAAATAC 11 V_HOXA13_02_M01297 TRANSFAC + 49458909 49458917 9.0E-06 AAATAAAAG 9 V_ZFP740_03_M02834 TRANSFAC - 49460258 49460273 0.0E+00 TCCCCACCCCCACTTG 16 V_HNF4ALPHA_Q6_M00638 TRANSFAC - 49460193 49460205 1.0E-06 CAGAACTTTGACC 13 V_GCNF_Q3_M02009 TRANSFAC + 49460252 49460261 6.0E-06 TAAGGTCAAG 10 V_P50P50_Q3_M01223 TRANSFAC - 49458741 49458753 8.0E-06 AGGGGAATATCCC 13 V_PLAG1_02_M01973 TRANSFAC - 49460416 49460431 5.0E-06 CCCCATCTGAGGGCCT 16 V_SP1_03_M02281 TRANSFAC - 49455123 49455132 3.0E-06 CCCCTCCCCC 10 V_HNF4A_03_M02220 TRANSFAC + 49460192 49460204 2.0E-06 GGGTCAAAGTTCT 13 V_SPZ1_01_M00446 TRANSFAC + 49459822 49459836 8.0E-06 GCCGGGGGGAATGCC 15 V_PPAR_DR1_Q2_M00763 TRANSFAC - 49460192 49460204 0.0E+00 AGAACTTTGACCC 13 V_SOX13_03_M02797 TRANSFAC - 49460392 49460407 6.0E-06 GTAAGATCAATAAATA 16 V_SP4_03_M02810 TRANSFAC - 49459995 49460011 3.0E-06 GCCCACGCCCCCTTCAG 17 V_AP1_Q6_01_M00925 TRANSFAC + 49458780 49458788 7.0E-06 ATGACTCAG 9 V_E47_02_M00071 TRANSFAC + 49458608 49458623 5.0E-06 GATTACAGGTGTTTGA 16 V_LEF1_03_M02878 TRANSFAC - 49460391 49460406 2.0E-06 TAAGATCAATAAATAC 16 V_PBX1_01_M00096 TRANSFAC - 49460394 49460402 5.0E-06 ATCAATAAA 9 V_SP1SP3_Q4_M01219 TRANSFAC + 49460161 49460171 8.0E-06 CCGCCCCCTGC 11 V_PPARG_03_M00528 TRANSFAC + 49460188 49460204 6.0E-06 CAGAGGGTCAAAGTTCT 17 V_DAX1_01_M01248 TRANSFAC - 49460542 49460561 1.0E-06 CATCTGCAAGGTCACTTACA 20 V_AP1_C_M00199 TRANSFAC + 49458780 49458788 6.0E-06 ATGACTCAG 9 V_HNF4A_Q6_01_M02016 TRANSFAC + 49460193 49460207 4.0E-06 GGTCAAAGTTCTGGA 15 V_HNF4_DR1_Q3_M00764 TRANSFAC - 49460192 49460204 3.0E-06 AGAACTTTGACCC 13 V_PAX3_01_M00360 TRANSFAC + 49460508 49460520 0.0E+00 TCGTCACGCTTTC 13 V_STAF_02_M00264 TRANSFAC - 49459927 49459947 4.0E-06 ATCTCCCGGCGTGCCTGGCAG 21 V_SP4_Q5_M01273 TRANSFAC - 49455123 49455133 5.0E-06 GCCCCTCCCCC 11 V_AP1_Q4_01_M00926 TRANSFAC - 49458780 49458787 1.0E-05 TGAGTCAT 8 V_AREB6_02_M00413 TRANSFAC - 49458610 49458621 4.0E-06 AAACACCTGTAA 12 V_DR1_Q3_M00762 TRANSFAC + 49460192 49460204 1.0E-06 GGGTCAAAGTTCT 13 V_HNF4_Q6_01_M01031 TRANSFAC + 49460192 49460205 5.0E-06 GGGTCAAAGTTCTG 14 V_TCF7L2_04_M02922 TRANSFAC - 49460391 49460406 7.0E-06 TAAGATCAATAAATAC 16 V_FRA1_Q5_M01267 TRANSFAC - 49458780 49458787 1.0E-05 TGAGTCAT 8 V_ASCL2_04_M02841 TRANSFAC - 49458655 49458670 0.0E+00 TTAACCCCTCTCTATT 16 V_ESRRA_03_M02748 TRANSFAC - 49460543 49460559 5.0E-06 TCTGCAAGGTCACTTAC 17 V_ZFP281_01_M01597 TRANSFAC + 49455122 49455132 3.0E-06 AGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 49460262 49460272 1.0E-06 TGGGGGTGGGG 11 V_SOX8_03_M02808 TRANSFAC + 49460391 49460407 2.0E-06 GTATTTATTGATCTTAC 17 V_HSF2_02_M01244 TRANSFAC + 49460196 49460208 8.0E-06 CAAAGTTCTGGAA 13 V_FOXJ2_01_M00422 TRANSFAC - 49460387 49460404 4.0E-06 AGATCAATAAATACTTGT 18 V_SMAD3_Q6_M00701 TRANSFAC - 49460353 49460361 1.0E-05 TGTCTGCCT 9 V_UF1H3BETA_Q6_M01068 TRANSFAC + 49460260 49460273 5.0E-06 AGTGGGGGTGGGGA 14 V_RXRLXRB_01_M01198 TRANSFAC + 49460192 49460204 4.0E-06 GGGTCAAAGTTCT 13 V_HNF4_01_M00134 TRANSFAC + 49460189 49460207 0.0E+00 AGAGGGTCAAAGTTCTGGA 19 V_SP1_Q4_01_M00932 TRANSFAC + 49455122 49455134 8.0E-06 AGGGGGAGGGGCA 13 V_TCF11MAFG_01_M00284 TRANSFAC - 49460498 49460519 2.0E-06 AAAGCGTGACGAAGCAGTAGTC 22 V_COUP_DR1_Q6_M00765 TRANSFAC - 49460192 49460204 1.0E-06 AGAACTTTGACCC 13 V_CDPCR3_01_M00105 TRANSFAC + 49460386 49460400 1.0E-06 CACAAGTATTTATTG 15 V_DMRT1_01_M01146 TRANSFAC - 49458941 49458955 7.0E-06 TGGAGACATTGCAGA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.