Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ZNF638 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 27332 zinc finger protein 638 chr2 + 71553884 - 71559384 71558884 Transcription Factor Binding Sites   Download all TFBS in the ZNF638 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX - 71558090 71558099 2.0E-06 ACAATAAAAA 10 SOX4_HMG_DBD_dimeric_16_1 SELEX + 71557945 71557960 2.0E-06 GAACAATGACTGGGTT 16 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX - 71558090 71558099 2.0E-06 ACAATAAAAA 10 SRY_HMG_DBD_dimeric_15_1 SELEX - 71558599 71558613 4.0E-06 AATAATAACATTATA 15 SOX2_HMG_full_dimeric_17_1 SELEX - 71558598 71558614 6.0E-06 CAATAATAACATTATAT 17 YY1_C2H2_full_monomeric_11_1 SELEX - 71559128 71559138 5.0E-06 GCCGCCATTTT 11 SOX8_HMG_full_dimeric_15_1 SELEX + 71557946 71557960 4.0E-06 AACAATGACTGGGTT 15 HLF_bZIP_full_dimeric_12_1 SELEX + 71558000 71558011 1.0E-05 CATTGCATAACA 12 EWSR1-FLI1_MA0149.1 JASPAR + 71559557 71559574 5.0E-06 GGGATGAAGGAGGGAATG 18 NFKB1_MA0105.1 JASPAR - 71559167 71559177 8.0E-06 GGGGGTCCCCC 11 Sox17_HMG_DBD_dimeric_15_1 SELEX - 71558599 71558613 8.0E-06 AATAATAACATTATA 15 ZNF238_C2H2_full_monomeric_13_1 SELEX + 71558978 71558990 8.0E-06 GATCCAGCTGTTA 13 OTX2_homeodomain_DBD_dimeric_15_1 SELEX + 71558599 71558613 9.0E-06 TATAATGTTATTATT 15 PROP1_homeodomain_full_dimeric_11_1 SELEX + 71558601 71558611 8.0E-06 TAATGTTATTA 11 PROP1_homeodomain_full_dimeric_11_1 SELEX - 71558601 71558611 1.0E-05 TAATAACATTA 11 NFATC1_NFAT_full_dimeric_14_1 SELEX + 71558040 71558053 2.0E-06 TTTTCCATGGGTAA 14 NFATC1_NFAT_full_dimeric_14_1 SELEX - 71558040 71558053 6.0E-06 TTACCCATGGAAAA 14 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX - 71558091 71558099 7.0E-06 ACAATAAAA 9 Alx4_homeodomain_DBD_dimeric_13_1 SELEX - 71558600 71558612 9.0E-06 ATAATAACATTAT 13 SOX18_HMG_full_dimeric_15_1 SELEX + 71557946 71557960 5.0E-06 AACAATGACTGGGTT 15 NFATC1_NFAT_full_dimeric_20_1 SELEX + 71560965 71560984 3.0E-06 TATGGAAAGCTCGTATTCCT 20 SOX9_HMG_full_dimeric_16_3 SELEX - 71557950 71557965 1.0E-06 ATGAAAACCCAGTCAT 16 SOX15_HMG_full_dimeric_15_1 SELEX - 71558599 71558613 7.0E-06 AATAATAACATTATA 15 YY2_C2H2_full_monomeric_11_1 SELEX - 71559128 71559138 1.0E-06 GCCGCCATTTT 11 SOX7_HMG_full_dimeric_17_1 SELEX + 71557945 71557961 1.0E-06 GAACAATGACTGGGTTT 17 Gata1_MA0035.2 JASPAR - 71560891 71560901 1.0E-06 AGAGATAAGGA 11 HOXA13_homeodomain_full_monomeric_10_1 SELEX - 71558090 71558099 2.0E-06 ACAATAAAAA 10 NFIL3_bZIP_DBD_dimeric_12_1 SELEX + 71558000 71558011 3.0E-06 CATTGCATAACA 12 CART1_homeodomain_DBD_dimeric_13_1 SELEX + 71558600 71558612 8.0E-06 ATAATGTTATTAT 13 Foxd3_MA0041.1 JASPAR + 71559740 71559751 7.0E-06 AATTGTTTTTGT 12 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX - 71558090 71558099 4.0E-06 ACAATAAAAA 10 CPEB1_RRM_full_monomeric_8_1 SELEX - 71558090 71558097 4.0E-06 AATAAAAA 8 Sox3_HMG_DBD_dimeric_17_1 SELEX + 71557945 71557961 9.0E-06 GAACAATGACTGGGTTT 17 Sox3_HMG_DBD_dimeric_17_1 SELEX + 71558598 71558614 6.0E-06 ATATAATGTTATTATTG 17 Sox3_HMG_DBD_dimeric_17_1 SELEX - 71558598 71558614 4.0E-06 CAATAATAACATTATAT 17 NRF1_NRF_full_dimeric_12_1 SELEX + 71558891 71558902 3.0E-06 CGCGCATGCGTG 12 NRF1_NRF_full_dimeric_12_1 SELEX - 71558891 71558902 3.0E-06 CACGCATGCGCG 12 CDX2_homeodomain_DBD_monomeric_9_1 SELEX - 71558091 71558099 6.0E-06 ACAATAAAA 9 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 71558735 71558747 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 71558736 71558748 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 71558737 71558749 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 71558739 71558751 5.0E-06 GCAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 71559526 71559538 6.0E-06 CCAAACACAAACA 13 CDX1_homeodomain_DBD_monomeric_9_1 SELEX - 71558091 71558099 6.0E-06 ACAATAAAA 9 RREB1_MA0073.1 JASPAR - 71559522 71559541 9.0E-06 ACCCCAAACACAAACACGCT 20 RREB1_MA0073.1 JASPAR - 71559532 71559551 4.0E-06 CCCCTCCCCAACCCCAAACA 20 HNF1A_MA0046.1 JASPAR + 71563740 71563753 4.0E-06 AGTTAATCTTCACA 14 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX - 71558090 71558099 6.0E-06 ACAATAAAAA 10 SOX9_HMG_full_dimeric_17_1 SELEX + 71557945 71557961 3.0E-06 GAACAATGACTGGGTTT 17 Zfx_MA0146.1 JASPAR - 71559335 71559348 5.0E-06 GCCGCCTCGGCCTC 14 V_DMRT4_01_M01149 TRANSFAC - 71555282 71555294 7.0E-06 AATGTTTCAAACT 13 V_HOXA9_01_M01351 TRANSFAC - 71558738 71558754 8.0E-06 GCGGCAAAAAAAAAAAA 17 V_FOXP1_01_M00987 TRANSFAC - 71558052 71558071 2.0E-06 ATATTTGTAATCTCCATTTT 20 V_HNF3B_01_M00131 TRANSFAC - 71557992 71558006 1.0E-05 TGCAATGTTTTATCT 15 V_TST1_02_M01316 TRANSFAC + 71560857 71560873 8.0E-06 GGTAAATTATTTTAGTC 17 V_OBOX5_05_M03066 TRANSFAC - 71563737 71563753 9.0E-06 TGTGAAGATTAACTAAA 17 V_GATA1_Q6_M02004 TRANSFAC - 71560890 71560904 2.0E-06 TTTAGAGATAAGGAA 15 V_GATA2_02_M00348 TRANSFAC - 71560892 71560901 7.0E-06 AGAGATAAGG 10 V_DMRT3_01_M01148 TRANSFAC + 71555282 71555296 3.0E-06 AGTTTGAAACATTTC 15 V_HNF1_02_M01379 TRANSFAC - 71563735 71563751 5.0E-06 TGAAGATTAACTAAAAT 17 V_ZFX_01_M01593 TRANSFAC + 71559332 71559347 8.0E-06 GGCGAGGCCGAGGCGG 16 V_EVI1_04_M00081 TRANSFAC - 71558735 71558749 6.0E-06 AAAAAAAAAAAAAAA 15 V_FOXD3_01_M00130 TRANSFAC + 71559740 71559751 4.0E-06 AATTGTTTTTGT 12 V_BCL6_01_M01183 TRANSFAC + 71558134 71558149 5.0E-06 TTAGCTGAATAGCTTT 16 V_PROP1_01_M01294 TRANSFAC + 71558601 71558611 8.0E-06 TAATGTTATTA 11 V_PROP1_01_M01294 TRANSFAC - 71558601 71558611 9.0E-06 TAATAACATTA 11 V_SRY_02_M00160 TRANSFAC - 71559738 71559749 1.0E-05 AAAAACAATTCA 12 V_AP4_Q6_M00176 TRANSFAC + 71561314 71561323 2.0E-06 CTCAGCTGGT 10 V_GATA1_03_M00127 TRANSFAC + 71558055 71558068 3.0E-06 ATGGAGATTACAAA 14 V_SOX11_04_M02899 TRANSFAC + 71559738 71559751 7.0E-06 TGAATTGTTTTTGT 14 V_SOX11_04_M02899 TRANSFAC + 71560859 71560872 6.0E-06 TAAATTATTTTAGT 14 V_CEBP_Q2_M00190 TRANSFAC + 71557999 71558012 2.0E-06 ACATTGCATAACAC 14 V_GATA_C_M00203 TRANSFAC - 71560889 71560899 3.0E-06 AGATAAGGAAA 11 V_AREB6_04_M00415 TRANSFAC - 71563794 71563802 8.0E-06 CTGTTTCAT 9 V_AFP1_Q6_M00616 TRANSFAC - 71558603 71558613 6.0E-06 AATAATAACAT 11 V_SP100_04_M02913 TRANSFAC + 71559213 71559227 7.0E-06 TCCGTCGTTTATTCA 15 V_PU1_Q4_M01172 TRANSFAC + 71560881 71560899 5.0E-06 AGCTTTTGTTTCCTTATCT 19 V_TCFAP2E_04_M02926 TRANSFAC - 71558734 71558747 7.0E-06 AAAAAAAAAAAAAC 14 V_TCFAP2E_04_M02926 TRANSFAC - 71558735 71558748 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 71558736 71558749 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 71558737 71558750 2.0E-06 CAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 71558739 71558752 5.0E-06 GGCAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 71558742 71558755 6.0E-06 TGCGGCAAAAAAAA 14 V_PAX6_02_M01391 TRANSFAC + 71560856 71560871 7.0E-06 TGGTAAATTATTTTAG 16 V_CEBPB_01_M00109 TRANSFAC - 71557999 71558012 0.0E+00 GTGTTATGCAATGT 14 V_CEBPB_01_M00109 TRANSFAC + 71558093 71558106 6.0E-06 TTATTGTGAAATGA 14 V_BCL6_02_M01185 TRANSFAC + 71560871 71560884 4.0E-06 GTCTTTCTTGAGCT 14 V_WT1_Q6_01_M02036 TRANSFAC - 71559147 71559156 4.0E-06 CGCCCCCGCC 10 V_ELF4_04_M02850 TRANSFAC - 71558731 71558747 1.0E-05 AAAAAAAAAAAAACTCC 17 V_ELF4_04_M02850 TRANSFAC - 71558732 71558748 2.0E-06 AAAAAAAAAAAAAACTC 17 V_ELF4_04_M02850 TRANSFAC - 71558734 71558750 6.0E-06 CAAAAAAAAAAAAAAAC 17 V_ELF4_04_M02850 TRANSFAC - 71558735 71558751 1.0E-06 GCAAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 71558736 71558752 1.0E-06 GGCAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 71558737 71558753 3.0E-06 CGGCAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 71558738 71558754 1.0E-05 GCGGCAAAAAAAAAAAA 17 V_TST1_01_M00133 TRANSFAC + 71563724 71563738 3.0E-06 CAGGATTTACAATTT 15 V_HMBOX1_01_M01456 TRANSFAC + 71563733 71563749 5.0E-06 CAATTTTAGTTAATCTT 17 V_TAL1_Q6_M00993 TRANSFAC + 71558980 71558989 7.0E-06 TCCAGCTGTT 10 V_SOX13_03_M02797 TRANSFAC - 71559736 71559751 6.0E-06 ACAAAAACAATTCACT 16 V_OBOX5_02_M01480 TRANSFAC - 71563737 71563753 9.0E-06 TGTGAAGATTAACTAAA 17 V_ETV7_01_M02071 TRANSFAC - 71559589 71559598 7.0E-06 CCCGGAAAAG 10 V_CEBPE_Q6_M01868 TRANSFAC + 71557997 71558010 1.0E-06 AAACATTGCATAAC 14 V_ZFP105_03_M02827 TRANSFAC - 71558733 71558747 2.0E-06 AAAAAAAAAAAAACT 15 V_ZFP105_03_M02827 TRANSFAC - 71558734 71558748 2.0E-06 AAAAAAAAAAAAAAC 15 V_ZFP105_03_M02827 TRANSFAC - 71558735 71558749 0.0E+00 AAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 71558736 71558750 1.0E-06 CAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 71558737 71558751 8.0E-06 GCAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 71558738 71558752 2.0E-06 GGCAAAAAAAAAAAA 15 V_FOXK1_04_M02856 TRANSFAC - 71558601 71558615 1.0E-06 TCAATAATAACATTA 15 V_EGR1_Q6_M01873 TRANSFAC + 71559148 71559157 4.0E-06 GCGGGGGCGG 10 V_SOX18_03_M02801 TRANSFAC - 71557940 71557955 7.0E-06 AGTCATTGTTCAAAAT 16 V_ELF5_01_M01197 TRANSFAC - 71560887 71560897 8.0E-06 ATAAGGAAACA 11 V_YY1_Q6_02_M01035 TRANSFAC - 71558052 71558062 3.0E-06 ATCTCCATTTT 11 V_YY1_Q6_02_M01035 TRANSFAC - 71559128 71559138 0.0E+00 GCCGCCATTTT 11 V_REX1_03_M01744 TRANSFAC + 71559128 71559139 1.0E-06 AAAATGGCGGCG 12 V_PIT1_01_M01465 TRANSFAC + 71560857 71560873 7.0E-06 GGTAAATTATTTTAGTC 17 V_AP4_Q5_M00175 TRANSFAC + 71561314 71561323 1.0E-06 CTCAGCTGGT 10 V_GATA1_09_M02254 TRANSFAC - 71560891 71560901 1.0E-06 AGAGATAAGGA 11 V_RREB1_01_M00257 TRANSFAC - 71559527 71559540 2.0E-06 CCCCAAACACAAAC 14 V_RREB1_01_M00257 TRANSFAC - 71559533 71559546 5.0E-06 CCCCAACCCCAAAC 14 V_NKX23_01_M01457 TRANSFAC + 71560992 71561007 1.0E-05 TACTAGGTGCTTAATG 16 V_NKX23_01_M01457 TRANSFAC - 71560992 71561007 8.0E-06 CATTAAGCACCTAGTA 16 V_YY1_03_M02044 TRANSFAC - 71559127 71559138 0.0E+00 GCCGCCATTTTG 12 V_SOX15_03_M02799 TRANSFAC - 71559735 71559751 9.0E-06 ACAAAAACAATTCACTA 17 V_MTF1_06_M02882 TRANSFAC - 71558734 71558747 1.0E-06 AAAAAAAAAAAAAC 14 V_MTF1_06_M02882 TRANSFAC - 71558735 71558748 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 71558736 71558749 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 71558737 71558750 8.0E-06 CAAAAAAAAAAAAA 14 V_GABPBETA_Q3_M01876 TRANSFAC - 71559072 71559082 7.0E-06 ACAGGAAGGGC 11 V_EHF_06_M02745 TRANSFAC - 71560917 71560931 3.0E-06 CCAAGCAGGAAGTAA 15 V_FAC1_01_M00456 TRANSFAC - 71558735 71558748 3.0E-06 AAAAAAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC - 71558736 71558749 3.0E-06 AAAAAAAAAAAAAA 14 V_TAL1_01_M01591 TRANSFAC + 71560889 71560901 0.0E+00 TTTCCTTATCTCT 13 V_BRN4_01_M01473 TRANSFAC + 71560857 71560873 4.0E-06 GGTAAATTATTTTAGTC 17 V_HNF1_01_M00132 TRANSFAC + 71563740 71563754 6.0E-06 AGTTAATCTTCACAG 15 V_FOXL1_02_M02857 TRANSFAC - 71558089 71558104 4.0E-06 ATTTCACAATAAAAAG 16 V_NKX3A_02_M01383 TRANSFAC + 71560992 71561008 7.0E-06 TACTAGGTGCTTAATGT 17 V_ZFP206_01_M01742 TRANSFAC + 71558846 71558856 8.0E-06 TACGCAGGCGC 11 V_ZFP206_01_M01742 TRANSFAC + 71558891 71558901 8.0E-06 CGCGCATGCGT 11 V_LMX1B_01_M01363 TRANSFAC + 71563733 71563749 7.0E-06 CAATTTTAGTTAATCTT 17 V_SRF_01_M00152 TRANSFAC - 71558592 71558609 5.0E-06 ATAACATTATATGGCCAG 18 V_NRF1_Q6_M00652 TRANSFAC - 71558891 71558900 4.0E-06 CGCATGCGCG 10 V_LMO2COM_02_M00278 TRANSFAC + 71558080 71558088 7.0E-06 CAGATAGGG 9 V_PLZF_02_M01075 TRANSFAC - 71563724 71563752 7.0E-06 GTGAAGATTAACTAAAATTGTAAATCCTG 29 V_CEBPB_Q6_M01896 TRANSFAC - 71558000 71558009 7.0E-06 TTATGCAATG 10 V_SOX21_04_M02907 TRANSFAC + 71559736 71559752 9.0E-06 AGTGAATTGTTTTTGTG 17 V_SOX8_03_M02808 TRANSFAC + 71559735 71559751 6.0E-06 TAGTGAATTGTTTTTGT 17 V_SRF_06_M02916 TRANSFAC - 71558731 71558747 1.0E-06 AAAAAAAAAAAAACTCC 17 V_SRF_06_M02916 TRANSFAC - 71558732 71558748 0.0E+00 AAAAAAAAAAAAAACTC 17 V_SRF_06_M02916 TRANSFAC - 71558733 71558749 0.0E+00 AAAAAAAAAAAAAAACT 17 V_SRF_06_M02916 TRANSFAC - 71558734 71558750 0.0E+00 CAAAAAAAAAAAAAAAC 17 V_SRF_06_M02916 TRANSFAC - 71558735 71558751 0.0E+00 GCAAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 71558736 71558752 0.0E+00 GGCAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 71558737 71558753 1.0E-06 CGGCAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 71558738 71558754 8.0E-06 GCGGCAAAAAAAAAAAA 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 71559557 71559574 5.0E-06 GGGATGAAGGAGGGAATG 18 V_HNF1A_Q5_M02013 TRANSFAC + 71563740 71563750 7.0E-06 AGTTAATCTTC 11 V_HLF_01_M00260 TRANSFAC - 71558001 71558010 1.0E-05 GTTATGCAAT 10 V_SOX1_03_M02802 TRANSFAC - 71559732 71559747 7.0E-06 AAACAATTCACTAACG 16 V_FOXO1_01_M00473 TRANSFAC - 71559741 71559750 5.0E-06 CAAAAACAAT 10 V_SOX2_Q6_M01272 TRANSFAC - 71558101 71558116 6.0E-06 AATCCTTTTGTCATTT 16 V_SOX12_03_M02796 TRANSFAC - 71557940 71557953 1.0E-06 TCATTGTTCAAAAT 14 V_SRY_05_M02917 TRANSFAC + 71557940 71557956 1.0E-06 ATTTTGAACAATGACTG 17 V_GATA5_03_M02756 TRANSFAC - 71560888 71560904 4.0E-06 TTTAGAGATAAGGAAAC 17 V_FOXO4_01_M00472 TRANSFAC - 71559739 71559749 3.0E-06 AAAAACAATTC 11 V_CEBP_Q2_01_M00912 TRANSFAC + 71558001 71558012 9.0E-06 ATTGCATAACAC 12 V_CEBP_Q2_01_M00912 TRANSFAC - 71558093 71558104 3.0E-06 ATTTCACAATAA 12 V_LPOLYA_B_M00318 TRANSFAC - 71555222 71555229 7.0E-06 CAATAAAG 8 V_GATA1_02_M00126 TRANSFAC - 71560890 71560903 3.0E-06 TTAGAGATAAGGAA 14 V_GATA6_04_M02757 TRANSFAC - 71560888 71560904 2.0E-06 TTTAGAGATAAGGAAAC 17 V_HNF1A_01_M02162 TRANSFAC + 71563740 71563753 4.0E-06 AGTTAATCTTCACA 14 V_OBOX5_01_M01381 TRANSFAC - 71563737 71563753 8.0E-06 TGTGAAGATTAACTAAA 17 V_TCF3_05_M02920 TRANSFAC - 71558738 71558752 4.0E-06 GGCAAAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC - 71558739 71558753 1.0E-06 CGGCAAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC - 71558740 71558754 3.0E-06 GCGGCAAAAAAAAAA 15 V_OTX1_01_M01366 TRANSFAC - 71563737 71563753 1.0E-05 TGTGAAGATTAACTAAA 17 V_OBOX6_06_M03067 TRANSFAC + 71563737 71563753 8.0E-06 TTTAGTTAATCTTCACA 17 V_PAX4_04_M00380 TRANSFAC - 71558714 71558743 0.0E+00 AAAAAAAAACTCCAGCGCCGTCTTCACTCT 30 V_SMAD1_01_M01590 TRANSFAC + 71558102 71558113 8.0E-06 AATGACAAAAGG 12 V_DMRT5_01_M01150 TRANSFAC + 71559098 71559112 1.0E-06 TATTGTATCTGTGTC 15 V_NANOG_02_M01247 TRANSFAC + 71558098 71558117 3.0E-06 GTGAAATGACAAAAGGATTT 20 V_NANOG_02_M01247 TRANSFAC - 71560878 71560897 7.0E-06 ATAAGGAAACAAAAGCTCAA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.