Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CACNG4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 27092 calcium channel, voltage-dependent, gamma subunit 4 chr17 + 64955979 - 64961479 64960979 Transcription Factor Binding Sites   Download all TFBS in the CACNG4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HSF2_HSF_DBD_trimeric_13_1 SELEX - 64956804 64956816 9.0E-06 ATCTGGAAATTTC 13 VSX1_homeodomain_full_monomeric_11_1 SELEX + 64963256 64963266 9.0E-06 TGCTAATTAGG 11 Foxk1_forkhead_DBD_putatively-multimeric_11_1 SELEX + 64961536 64961546 7.0E-06 CAGACACAATG 11 EN2_homeodomain_full_monomeric_10_1 SELEX - 64963257 64963266 2.0E-06 CCTAATTAGC 10 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 64961758 64961768 1.0E-05 GCCCCGCCCCC 11 LHX6_homeodomain_full_dimeric_16_1 SELEX + 64963259 64963274 3.0E-06 TAATTAGGATTAATGC 16 HSF1_HSF_full_trimeric_13_1 SELEX - 64956804 64956816 8.0E-06 ATCTGGAAATTTC 13 PDX1_homeodomain_DBD_dimeric_18_1 SELEX + 64963258 64963275 9.0E-06 CTAATTAGGATTAATGCT 18 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 64963258 64963275 3.0E-06 AGCATTAATCCTAATTAG 18 LHX2_homeodomain_DBD_dimeric_15_1 SELEX - 64963259 64963273 9.0E-06 CATTAATCCTAATTA 15 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 64962106 64962119 4.0E-06 GACCACGCCCCTCC 14 Foxj3_forkhead_DBD_putatively-multimeric_11_1 SELEX + 64961535 64961545 1.0E-06 ACAGACACAAT 11 POU1F1_POU_DBD_monomeric_14_1 SELEX + 64963252 64963265 3.0E-06 CTCATGCTAATTAG 14 POU2F2_POU_DBD_monomeric_11_1 SELEX + 64963253 64963263 7.0E-06 TCATGCTAATT 11 IRF5_IRF_full_monomeric_11_1 SELEX + 64961552 64961562 5.0E-06 CACCGAAACTC 11 KLF13_C2H2_full_monomeric_18_1 SELEX - 64962103 64962120 6.0E-06 TGACCACGCCCCTCCCAG 18 ZNF238_C2H2_full_monomeric_13_1 SELEX - 64961141 64961153 9.0E-06 GTTGCAGATGTGC 13 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX - 64963258 64963271 5.0E-06 TTAATCCTAATTAG 14 FOXK1_forkhead_DBD_putatively-multimeric_10_1 SELEX + 64961536 64961545 8.0E-06 CAGACACAAT 10 RFX2_RFX_DBD_dimeric_15_1 SELEX - 64961692 64961706 0.0E+00 GGTTGCCAAGCAACC 15 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 64961718 64961733 8.0E-06 AGTTCCCATAGCAATA 16 POU3F3_POU_DBD_monomeric_13_1 SELEX + 64963252 64963264 8.0E-06 CTCATGCTAATTA 13 HSF4_HSF_DBD_trimeric_13_1 SELEX - 64956804 64956816 4.0E-06 ATCTGGAAATTTC 13 OTX2_homeodomain_DBD_monomeric_8_1 SELEX - 64963264 64963271 7.0E-06 TTAATCCT 8 EMX1_homeodomain_DBD_monomeric_10_1 SELEX - 64963257 64963266 5.0E-06 CCTAATTAGC 10 FOXG1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 64961535 64961546 2.0E-06 ACAGACACAATG 12 znf143_MA0088.1 JASPAR - 64960498 64960517 1.0E-06 TCTCTCCCAGAGTTCATTCA 20 RFX3_RFX_DBD_dimeric_15_1 SELEX + 64961692 64961706 6.0E-06 GGTTGCTTGGCAACC 15 RFX3_RFX_DBD_dimeric_15_1 SELEX - 64961692 64961706 0.0E+00 GGTTGCCAAGCAACC 15 SP4_C2H2_full_monomeric_17_1 SELEX - 64962105 64962121 4.0E-06 ATGACCACGCCCCTCCC 17 NOTO_homeodomain_DBD_monomeric_10_1 SELEX - 64963257 64963266 7.0E-06 CCTAATTAGC 10 SP1_C2H2_DBD_monomeric_11_1 SELEX - 64962108 64962118 1.0E-05 ACCACGCCCCT 11 EN1_homeodomain_DBD_monomeric_10_1 SELEX - 64963257 64963266 5.0E-06 CCTAATTAGC 10 PAX4_PAX_full_monomeric_8_1 SELEX + 64963258 64963265 7.0E-06 CTAATTAG 8 PAX4_PAX_full_monomeric_8_1 SELEX - 64963258 64963265 7.0E-06 CTAATTAG 8 GBX1_homeodomain_DBD_monomeric_10_1 SELEX - 64963257 64963266 4.0E-06 CCTAATTAGC 10 RFX2_RFX_DBD_dimeric_16_1 SELEX + 64961718 64961733 7.0E-06 TATTGCTATGGGAACT 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 64961718 64961733 8.0E-06 AGTTCCCATAGCAATA 16 RFX4_RFX_DBD_dimeric_15_1 SELEX - 64961692 64961706 0.0E+00 GGTTGCCAAGCAACC 15 LHX2_homeodomain_DBD_monomeric_10_1 SELEX + 64963257 64963266 8.0E-06 GCTAATTAGG 10 LHX2_homeodomain_DBD_monomeric_10_1 SELEX - 64963257 64963266 9.0E-06 CCTAATTAGC 10 RFX5_RFX_DBD_dimeric_16_3 SELEX + 64961718 64961733 1.0E-05 TATTGCTATGGGAACT 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 64961718 64961733 2.0E-06 AGTTCCCATAGCAATA 16 POU3F1_POU_DBD_monomeric_12_1 SELEX + 64963253 64963264 4.0E-06 TCATGCTAATTA 12 Klf12_C2H2_DBD_monomeric_15_1 SELEX - 64962105 64962119 4.0E-06 GACCACGCCCCTCCC 15 POU6F2_POU_full_monomeric_10_1 SELEX + 64963257 64963266 7.0E-06 GCTAATTAGG 10 RORA_nuclearreceptor_DBD_dimeric_20_1 SELEX - 64964048 64964067 7.0E-06 AAGAGGCTAAGACAAGGTCA 20 Lhx8_homeodomain_DBD_monomeric_8_1 SELEX + 64963258 64963265 7.0E-06 CTAATTAG 8 Lhx8_homeodomain_DBD_monomeric_8_1 SELEX - 64963258 64963265 7.0E-06 CTAATTAG 8 POU3F2_POU_DBD_monomeric_12_1 SELEX + 64963253 64963264 2.0E-06 TCATGCTAATTA 12 EMX2_homeodomain_DBD_monomeric_10_1 SELEX + 64963257 64963266 5.0E-06 GCTAATTAGG 10 EMX2_homeodomain_DBD_monomeric_10_1 SELEX - 64963257 64963266 9.0E-06 CCTAATTAGC 10 EN1_homeodomain_full_monomeric_8_1 SELEX + 64963258 64963265 7.0E-06 CTAATTAG 8 EN1_homeodomain_full_monomeric_8_1 SELEX - 64963258 64963265 7.0E-06 CTAATTAG 8 RREB1_MA0073.1 JASPAR + 64961273 64961292 6.0E-06 GCCCCACACACACACACACA 20 RREB1_MA0073.1 JASPAR + 64961275 64961294 7.0E-06 CCCACACACACACACACACA 20 LHX6_homeodomain_full_monomeric_10_1 SELEX - 64963257 64963266 8.0E-06 CCTAATTAGC 10 V_FOXP1_01_M00987 TRANSFAC - 64961284 64961303 5.0E-06 ATGTGTGTGTGTGTGTGTGT 20 V_FOXP1_01_M00987 TRANSFAC - 64961286 64961305 1.0E-06 ATATGTGTGTGTGTGTGTGT 20 V_FOXP1_01_M00987 TRANSFAC - 64961288 64961307 4.0E-06 GTATATGTGTGTGTGTGTGT 20 V_OBOX6_01_M01445 TRANSFAC + 64963259 64963273 3.0E-06 TAATTAGGATTAATG 15 V_AP2ALPHA_Q6_M01857 TRANSFAC + 64960776 64960786 2.0E-06 AGCCCCCGGCC 11 V_AP2ALPHA_Q6_M01857 TRANSFAC - 64961754 64961764 6.0E-06 CGCCCCCGGCC 11 V_KLF15_Q2_M01714 TRANSFAC + 64961680 64961693 7.0E-06 GAGGGGGGGAGGGG 14 V_BTEB3_Q5_M01865 TRANSFAC + 64960766 64960778 7.0E-06 GAGAGGGAGGAGC 13 V_ZFP410_04_M02936 TRANSFAC + 64961266 64961282 9.0E-06 CCTCGCCGCCCCACACA 17 V_SP1_Q6_01_M00931 TRANSFAC + 64961743 64961752 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 64961759 64961768 4.0E-06 GGGGCGGGGC 10 V_EGR_Q6_M00807 TRANSFAC + 64961378 64961388 1.0E-05 GTGGGCGCGGC 11 V_GBX2_01_M01382 TRANSFAC - 64963253 64963269 7.0E-06 AATCCTAATTAGCATGA 17 V_OCT1_01_M00135 TRANSFAC + 64963249 64963267 8.0E-06 TTCCTCATGCTAATTAGGA 19 V_POU2F3_01_M01476 TRANSFAC + 64963251 64963266 7.0E-06 CCTCATGCTAATTAGG 16 V_HOXD1_01_M01448 TRANSFAC - 64963253 64963269 3.0E-06 AATCCTAATTAGCATGA 17 V_OCT_C_M00210 TRANSFAC - 64963253 64963265 3.0E-06 CTAATTAGCATGA 13 V_SP1_02_M01303 TRANSFAC - 64961180 64961190 8.0E-06 GGGGCGGGGGC 11 V_SP1_02_M01303 TRANSFAC + 64961839 64961849 8.0E-06 GGGGCGGGGGC 11 V_GM497_04_M02864 TRANSFAC - 64961226 64961241 4.0E-06 TGCAGCACACCCGCCA 16 V_GM497_04_M02864 TRANSFAC + 64961330 64961345 8.0E-06 ACACACACACACGCGC 16 V_EVX1_01_M01475 TRANSFAC - 64963253 64963269 4.0E-06 AATCCTAATTAGCATGA 17 V_PAX7_01_M01339 TRANSFAC - 64963253 64963269 3.0E-06 AATCCTAATTAGCATGA 17 V_PAX7_01_M01339 TRANSFAC + 64963254 64963270 2.0E-06 CATGCTAATTAGGATTA 17 V_LHX8_01_M01440 TRANSFAC - 64963253 64963269 1.0E-06 AATCCTAATTAGCATGA 17 V_PAX_Q6_M00808 TRANSFAC + 64962325 64962335 8.0E-06 CTTGAACTAAC 11 V_WT1_Q6_01_M02036 TRANSFAC - 64961841 64961850 4.0E-06 CGCCCCCGCC 10 V_EVX2_01_M01386 TRANSFAC + 64963253 64963269 1.0E-06 TCATGCTAATTAGGATT 17 V_LHX61_01_M01314 TRANSFAC + 64963253 64963269 9.0E-06 TCATGCTAATTAGGATT 17 V_CART1_01_M00416 TRANSFAC - 64963256 64963273 1.0E-06 CATTAATCCTAATTAGCA 18 V_GFI1_01_M00250 TRANSFAC + 64964071 64964094 3.0E-06 ACCCCTCAAATCAAAGTCTCTCCC 24 V_HIC1_03_M01073 TRANSFAC - 64961604 64961621 8.0E-06 CGGGGGTGCCGGCGCGGC 18 V_RFX1_01_M00280 TRANSFAC + 64961691 64961707 2.0E-06 GGGTTGCTTGGCAACCG 17 V_RFX1_01_M00280 TRANSFAC - 64961691 64961707 8.0E-06 CGGTTGCCAAGCAACCC 17 V_SP4_03_M02810 TRANSFAC - 64961637 64961653 7.0E-06 CCTCCCGCCCCCTCGCC 17 V_KROX_Q6_M00982 TRANSFAC - 64961637 64961650 3.0E-06 CCCGCCCCCTCGCC 14 V_KROX_Q6_M00982 TRANSFAC - 64961809 64961822 7.0E-06 TCTGCCCCCACCCC 14 V_KROX_Q6_M00982 TRANSFAC - 64961839 64961852 0.0E+00 CGCGCCCCCGCCCC 14 V_PXRRXR_02_M01153 TRANSFAC - 64960502 64960509 1.0E-05 AGAGTTCA 8 V_SP1_Q6_M00196 TRANSFAC + 64961683 64961695 9.0E-06 GGGGGGAGGGGTT 13 V_SP1_Q6_M00196 TRANSFAC + 64961757 64961769 2.0E-06 CGGGGGCGGGGCG 13 V_MAZ_Q6_01_M02023 TRANSFAC + 64960537 64960550 0.0E+00 CGGGGAGGGGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 64960552 64960565 1.0E-06 AAGGGAGGGGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 64961679 64961692 4.0E-06 GGAGGGGGGGAGGG 14 V_ZF5_B_M00333 TRANSFAC + 64960431 64960443 1.0E-06 TGGAGACGCGCTT 13 V_AP2BETA_Q3_M01858 TRANSFAC + 64961797 64961812 3.0E-06 GGCTCGGGCTGAGGGG 16 V_OCT1_05_M00161 TRANSFAC - 64963252 64963265 4.0E-06 CTAATTAGCATGAG 14 V_LHX2_01_M01325 TRANSFAC - 64963253 64963269 6.0E-06 AATCCTAATTAGCATGA 17 V_PAX4_05_M01385 TRANSFAC - 64963253 64963269 9.0E-06 AATCCTAATTAGCATGA 17 V_HOX13_01_M00023 TRANSFAC - 64963246 64963275 1.0E-06 AGCATTAATCCTAATTAGCATGAGGAATTA 30 V_NFE4_Q5_M02105 TRANSFAC - 64960581 64960592 7.0E-06 CCCCCTCGCCTC 12 V_NFE4_Q5_M02105 TRANSFAC - 64961635 64961646 1.0E-06 CCCCCTCGCCAG 12 V_OCT1_08_M01354 TRANSFAC + 64963253 64963268 4.0E-06 TCATGCTAATTAGGAT 16 V_SOX12_04_M02900 TRANSFAC + 64961401 64961416 6.0E-06 CGAGACACAAAGGAGC 16 V_RREB1_01_M00257 TRANSFAC + 64961274 64961287 4.0E-06 CCCCACACACACAC 14 V_KLF7_03_M02773 TRANSFAC - 64962106 64962121 4.0E-06 ATGACCACGCCCCTCC 16 V_STAF_02_M00264 TRANSFAC - 64960496 64960516 2.0E-06 CTCTCCCAGAGTTCATTCACA 21 V_SP1_01_M00008 TRANSFAC + 64962109 64962118 1.0E-05 GGGGCGTGGT 10 V_OCT4_02_M01124 TRANSFAC + 64963249 64963263 2.0E-06 TTCCTCATGCTAATT 15 V_TFIII_Q6_M00706 TRANSFAC + 64960767 64960775 6.0E-06 AGAGGGAGG 9 V_BCL6B_04_M02844 TRANSFAC + 64961267 64961282 5.0E-06 CTCGCCGCCCCACACA 16 V_SP4_Q5_M01273 TRANSFAC + 64961181 64961191 7.0E-06 CCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC - 64961758 64961768 1.0E-06 GCCCCGCCCCC 11 V_S8_01_M00099 TRANSFAC - 64963255 64963270 2.0E-06 TAATCCTAATTAGCAT 16 V_HAND1E47_01_M00222 TRANSFAC - 64956807 64956822 2.0E-06 ATTTAAATCTGGAAAT 16 V_POU6F1_02_M01462 TRANSFAC - 64963253 64963269 1.0E-05 AATCCTAATTAGCATGA 17 V_MAZR_01_M00491 TRANSFAC + 64962343 64962355 2.0E-06 TGGGGAGGGGCCA 13 V_ISX_01_M01331 TRANSFAC + 64963254 64963269 2.0E-06 CATGCTAATTAGGATT 16 V_ISX_01_M01331 TRANSFAC - 64963254 64963269 9.0E-06 AATCCTAATTAGCATG 16 V_OCT2_01_M01368 TRANSFAC + 64963251 64963266 5.0E-06 CCTCATGCTAATTAGG 16 V_CNOT3_01_M01253 TRANSFAC + 64961603 64961612 4.0E-06 GGCCGCGCCG 10 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC + 64961374 64961382 8.0E-06 GAGGGTGGG 9 V_PLAG1_01_M01778 TRANSFAC + 64961815 64961830 1.0E-06 GGGGCAGAAGTAGGGG 16 V_FPM315_01_M01587 TRANSFAC + 64960768 64960779 9.0E-06 GAGGGAGGAGCC 12 V_T3RBETA_Q6_01_M02119 TRANSFAC - 64964047 64964063 9.0E-06 GGCTAAGACAAGGTCAG 17 V_ZFP281_01_M01597 TRANSFAC + 64961683 64961693 2.0E-06 GGGGGGAGGGG 11 V_LHX61_02_M01422 TRANSFAC - 64963253 64963269 2.0E-06 AATCCTAATTAGCATGA 17 V_TITF1_Q3_M00432 TRANSFAC + 64964130 64964139 1.0E-06 ACTCAAGTGT 10 V_OCT1_07_M00248 TRANSFAC + 64963252 64963263 5.0E-06 CTCATGCTAATT 12 V_CHX10_01_M00437 TRANSFAC - 64963254 64963267 4.0E-06 TCCTAATTAGCATG 14 V_MYF6_03_M02781 TRANSFAC + 64962329 64962344 2.0E-06 AACTAACAGGTGGCTG 16 V_ESX1_01_M01474 TRANSFAC + 64963253 64963269 9.0E-06 TCATGCTAATTAGGATT 17 V_ZFP281_04_M02831 TRANSFAC - 64960748 64960762 4.0E-06 TCGCCCTCCCCCCTC 15 V_ZFP281_04_M02831 TRANSFAC - 64961680 64961694 2.0E-06 ACCCCTCCCCCCCTC 15 V_HSF2_02_M01244 TRANSFAC + 64956804 64956816 3.0E-06 GAAATTTCCAGAT 13 V_POU6F1_03_M01479 TRANSFAC - 64963253 64963269 7.0E-06 AATCCTAATTAGCATGA 17 V_POU6F1_03_M01479 TRANSFAC + 64963254 64963270 7.0E-06 CATGCTAATTAGGATTA 17 V_ZIC3_04_M02837 TRANSFAC - 64961613 64961627 2.0E-06 CTCCCCCGGGGGTGC 15 V_ZIC3_04_M02837 TRANSFAC + 64961614 64961628 2.0E-06 CACCCCCGGGGGAGG 15 V_ZIC1_04_M02835 TRANSFAC - 64961614 64961627 1.0E-06 CTCCCCCGGGGGTG 14 V_HOXB3_01_M01330 TRANSFAC - 64963253 64963269 7.0E-06 AATCCTAATTAGCATGA 17 V_S8_02_M01376 TRANSFAC - 64963253 64963269 2.0E-06 AATCCTAATTAGCATGA 17 V_SP1_Q2_01_M00933 TRANSFAC - 64961758 64961767 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC - 64961838 64961847 7.0E-06 CCCCGCCCCT 10 V_LHX4_01_M01421 TRANSFAC - 64963253 64963269 2.0E-06 AATCCTAATTAGCATGA 17 V_LHX4_01_M01421 TRANSFAC + 64963254 64963270 2.0E-06 CATGCTAATTAGGATTA 17 V_UF1H3BETA_Q6_M01068 TRANSFAC + 64960707 64960720 2.0E-06 GGCGGGGGAGGCGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC + 64962340 64962353 2.0E-06 GGCTGGGGAGGGGC 14 V_OG2_02_M01441 TRANSFAC + 64963254 64963270 2.0E-06 CATGCTAATTAGGATTA 17 V_SP1_Q4_01_M00932 TRANSFAC + 64961757 64961769 3.0E-06 CGGGGGCGGGGCG 13 V_OBOX6_02_M03068 TRANSFAC + 64963259 64963273 3.0E-06 TAATTAGGATTAATG 15 V_ZIC2_04_M02836 TRANSFAC + 64961614 64961628 3.0E-06 CACCCCCGGGGGAGG 15 V_ZIC2_04_M02836 TRANSFAC + 64961615 64961629 9.0E-06 ACCCCCGGGGGAGGT 15 V_AR_Q6_M00962 TRANSFAC - 64956822 64956830 6.0E-06 TGAGCACAA 9 V_MIF1_01_M00279 TRANSFAC + 64961691 64961708 0.0E+00 GGGTTGCTTGGCAACCGG 18 V_HOX13_02_M01452 TRANSFAC + 64963255 64963270 8.0E-06 ATGCTAATTAGGATTA 16 V_OTX3_01_M01403 TRANSFAC + 64963259 64963275 0.0E+00 TAATTAGGATTAATGCT 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.