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RPUSD2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 27079 RNA pseudouridylate synthase domain containing 2 chr15 + 40856536 - 40862036 40861536 Transcription Factor Binding Sites   Download all TFBS in the RPUSD2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints GABPA_MA0062.2 JASPAR + 40856848 40856858 6.0E-06 CCGGAAGTAAA 11 Arx_homeodomain_DBD_dimeric_13_1 SELEX - 40861401 40861413 6.0E-06 CGAATTAAATTAG 13 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 40861300 40861311 6.0E-06 TTTATAAATAAC 12 NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX - 40857509 40857517 2.0E-06 AAAAGTCAA 9 EBF1_EBF_full_dimeric_14_1 SELEX + 40861223 40861236 6.0E-06 AGACCCAAGGGACT 14 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 40857592 40857606 8.0E-06 TCGTTACCCAAATTA 15 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 40861393 40861407 1.0E-05 CAATTCACCTAATTT 15 TBX5_TBX_DBD_dimeric_20_1 SELEX + 40859568 40859587 7.0E-06 ATGTGAGAAATTCCCCACCC 20 TBX5_TBX_DBD_dimeric_20_1 SELEX - 40859568 40859587 6.0E-06 GGGTGGGGAATTTCTCACAT 20 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX - 40861587 40861603 8.0E-06 TAGGGCGCCTAAGGTCG 17 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 40856793 40856803 3.0E-06 TGCCTGAGGCA 11 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX - 40856793 40856803 1.0E-06 TGCCTCAGGCA 11 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX - 40857403 40857412 6.0E-06 GGCACGTGAC 10 EWSR1-FLI1_MA0149.1 JASPAR - 40857620 40857637 4.0E-06 GAGAGTAAGGAAAGAAGC 18 EBF1_MA0154.1 JASPAR + 40861225 40861234 1.0E-06 ACCCAAGGGA 10 NFYA_MA0060.1 JASPAR - 40857307 40857322 9.0E-06 CTCGACCAATCGACGC 16 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 40861300 40861311 3.0E-06 TTTATAAATAAC 12 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 40856793 40856803 4.0E-06 TGCCTGAGGCA 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX - 40856793 40856803 1.0E-06 TGCCTCAGGCA 11 MEF2A_MA0052.1 JASPAR - 40861301 40861310 4.0E-06 TTATTTATAA 10 BHLHE41_bHLH_full_dimeric_10_1 SELEX - 40857403 40857412 5.0E-06 GGCACGTGAC 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 40857178 40857187 5.0E-06 AACAGCTGCC 10 FOXB1_forkhead_DBD_putative-multimer_14_1 SELEX + 40856867 40856880 9.0E-06 CTATGACACGGCGG 14 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX - 40857403 40857412 8.0E-06 GGCACGTGAC 10 CREB3_bZIP_full_dimeric_14_1 SELEX + 40861485 40861498 8.0E-06 GAGTGACGTCCTCA 14 TBX4_TBX_DBD_dimeric_20_1 SELEX + 40859568 40859587 7.0E-06 ATGTGAGAAATTCCCCACCC 20 TBX4_TBX_DBD_dimeric_20_1 SELEX - 40859568 40859587 5.0E-06 GGGTGGGGAATTTCTCACAT 20 RFX4_RFX_DBD_dimeric_15_1 SELEX + 40857383 40857397 1.0E-06 GGTTGCCGGGAAACG 15 RFX4_RFX_DBD_dimeric_15_1 SELEX - 40857383 40857397 5.0E-06 CGTTTCCCGGCAACC 15 TEAD3_TEA_DBD_dimeric_17_1 SELEX - 40859564 40859580 7.0E-06 GAATTTCTCACATTTCA 17 PRRX1_homeodomain_full_dimeric_11_1 SELEX + 40861402 40861412 9.0E-06 TAATTTAATTC 11 Uncx_homeodomain_DBD_dimeric_13_1 SELEX + 40861401 40861413 3.0E-06 CTAATTTAATTCG 13 TBX2_TBX_full_dimeric_18_1 SELEX - 40859569 40859586 5.0E-06 GGTGGGGAATTTCTCACA 18 ELK1_ETS_full_monomeric_10_1 SELEX + 40856847 40856856 7.0E-06 GCCGGAAGTA 10 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 40856793 40856803 3.0E-06 TGCCTGAGGCA 11 TFAP2C_TFAP_full_dimeric_11_1 SELEX - 40856793 40856803 1.0E-06 TGCCTCAGGCA 11 TEAD1_TEA_full_dimeric_17_1 SELEX - 40859564 40859580 2.0E-06 GAATTTCTCACATTTCA 17 GABPA_ETS_full_monomeric_10_1 SELEX + 40856847 40856856 5.0E-06 GCCGGAAGTA 10 PHOX2A_homeodomain_DBD_dimeric_11_1 SELEX + 40861402 40861412 8.0E-06 TAATTTAATTC 11 Elk3_ETS_DBD_monomeric_10_1 SELEX + 40856847 40856856 6.0E-06 GCCGGAAGTA 10 E2F1_E2F_DBD_dimeric_12_1 SELEX - 40861592 40861603 1.0E-05 TAGGGCGCCTAA 12 ARNTL_bHLH_DBD_dimeric_10_1 SELEX - 40857403 40857412 4.0E-06 GGCACGTGAC 10 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 40856793 40856803 6.0E-06 TGCCTGAGGCA 11 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX - 40856793 40856803 3.0E-06 TGCCTCAGGCA 11 BHLHB3_bHLH_full_dimeric_10_1 SELEX - 40857403 40857412 6.0E-06 GGCACGTGAC 10 V_CEBPG_Q6_M00622 TRANSFAC - 40856774 40856786 1.0E-05 CTGATTTCTAAGT 13 V_STAT3_01_M00225 TRANSFAC + 40857380 40857400 6.0E-06 TCTGGTTGCCGGGAAACGGTG 21 V_CDX2_Q5_01_M01659 TRANSFAC + 40861300 40861310 1.0E-06 TTTATAAATAA 11 V_EBF_Q6_M00977 TRANSFAC - 40861225 40861235 7.0E-06 GTCCCTTGGGT 11 V_ATF5_01_M01295 TRANSFAC + 40859541 40859551 8.0E-06 CTTCTACCTTT 11 V_STAT3STAT3_Q3_M01220 TRANSFAC + 40857385 40857398 1.0E-06 TTGCCGGGAAACGG 14 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC - 40857506 40857517 7.0E-06 AAAAGTCAAAAG 12 V_SATB1_Q3_M01723 TRANSFAC + 40861193 40861208 8.0E-06 TTAAATAAAGCTCCTT 16 V_PROP1_01_M01294 TRANSFAC + 40861402 40861412 2.0E-06 TAATTTAATTC 11 V_EGR_Q6_M00807 TRANSFAC + 40861520 40861530 6.0E-06 GTGGGGGCAGC 11 V_NFAT3_Q3_M01734 TRANSFAC - 40856654 40856663 1.0E-05 ATATTTTCCA 10 V_CEBP_01_M00159 TRANSFAC + 40856650 40856662 1.0E-06 TGTTTGGAAAATA 13 V_FOXO3A_Q1_M01137 TRANSFAC + 40861302 40861313 9.0E-06 TATAAATAACGT 12 V_P50P50_Q3_M01223 TRANSFAC - 40859572 40859584 1.0E-05 TGGGGAATTTCTC 13 V_ARNT_01_M00236 TRANSFAC + 40857400 40857415 1.0E-06 GGAGTCACGTGCCCTG 16 V_P50RELAP65_Q5_01_M01224 TRANSFAC + 40859574 40859585 3.0E-06 GAAATTCCCCAC 12 V_PRX2_Q2_M02115 TRANSFAC - 40861971 40861979 7.0E-06 TCAAAGTAA 9 V_AP4_Q6_01_M00927 TRANSFAC + 40857178 40857186 1.0E-05 AACAGCTGC 9 V_NFY_Q6_01_M00775 TRANSFAC - 40857311 40857323 5.0E-06 TCTCGACCAATCG 13 V_ZFP691_03_M02833 TRANSFAC - 40861907 40861923 9.0E-06 TGCAAAGTGCTCATCTC 17 V_MEF2A_Q6_M02024 TRANSFAC - 40861300 40861309 2.0E-06 TATTTATAAA 10 V_PEA3_01_M01991 TRANSFAC + 40856847 40856856 8.0E-06 GCCGGAAGTA 10 V_RPC155_01_M01798 TRANSFAC + 40857461 40857476 4.0E-06 TCCAGGGTTCCAGTCC 16 V_HOXB13_01_M01467 TRANSFAC + 40861398 40861413 9.0E-06 CACCTAATTTAATTCG 16 V_POLY_C_M00212 TRANSFAC + 40861195 40861212 3.0E-06 AAATAAAGCTCCTTTCAA 18 V_E2F1_01_M01250 TRANSFAC + 40861214 40861221 1.0E-05 CGTTTCTT 8 V_XFD3_01_M00269 TRANSFAC - 40859612 40859625 2.0E-06 TCTGTAAACATCCA 14 V_CEBPD_Q6_M00621 TRANSFAC - 40859559 40859570 9.0E-06 CATTTCATTACT 12 V_NFKB_Q6_M00194 TRANSFAC - 40859571 40859584 3.0E-06 TGGGGAATTTCTCA 14 V_ER81_02_M02065 TRANSFAC + 40856847 40856856 8.0E-06 GCCGGAAGTA 10 V_MEF2_03_M00232 TRANSFAC + 40857568 40857589 9.0E-06 TTGTCTTCTAAAAATTTCACCC 22 V_ASCL2_03_M02737 TRANSFAC + 40857175 40857191 7.0E-06 CGTAACAGCTGCCCAGT 17 V_GADP_01_M01258 TRANSFAC - 40856845 40856856 8.0E-06 TACTTCCGGCCT 12 V_TEL2_Q6_M00678 TRANSFAC - 40856848 40856857 4.0E-06 TTACTTCCGG 10 V_XFD2_01_M00268 TRANSFAC - 40859612 40859625 5.0E-06 TCTGTAAACATCCA 14 V_XFD2_01_M00268 TRANSFAC + 40861300 40861313 4.0E-06 TTTATAAATAACGT 14 V_MEF2_Q6_01_M00941 TRANSFAC - 40861193 40861204 1.0E-06 AGCTTTATTTAA 12 V_EBF1_01_M02267 TRANSFAC + 40861225 40861234 1.0E-06 ACCCAAGGGA 10 V_ARID3A_04_M02735 TRANSFAC - 40856624 40856640 6.0E-06 GTATTTGATAAAAACAT 17 V_SP1_01_M00008 TRANSFAC - 40861445 40861454 7.0E-06 GAGGCGGGGT 10 V_TBP_06_M02814 TRANSFAC + 40861298 40861313 2.0E-06 CCTTTATAAATAACGT 16 V_TBP_06_M02814 TRANSFAC - 40861298 40861313 8.0E-06 ACGTTATTTATAAAGG 16 V_PEA3_02_M02066 TRANSFAC + 40856847 40856856 8.0E-06 GCCGGAAGTA 10 V_STAT3_03_M01595 TRANSFAC + 40857384 40857399 9.0E-06 GTTGCCGGGAAACGGT 16 V_ELK1_01_M00007 TRANSFAC + 40856844 40856859 5.0E-06 AAGGCCGGAAGTAAAA 16 V_NET_01_M01982 TRANSFAC + 40856847 40856856 7.0E-06 GCCGGAAGTA 10 V_GATA4_Q3_M00632 TRANSFAC + 40856778 40856789 7.0E-06 AGAAATCAGGAA 12 V_TBP_01_M00471 TRANSFAC + 40861302 40861309 4.0E-06 TATAAATA 8 V_MAZR_01_M00491 TRANSFAC - 40857420 40857432 5.0E-06 AGGGGAGGGGCAA 13 V_HIF1_Q3_M00797 TRANSFAC - 40862021 40862034 7.0E-06 GAAGACGTGCAGCA 14 V_E2F6_01_M01252 TRANSFAC + 40861214 40861221 1.0E-05 CGTTTCTT 8 V_ZBTB12_04_M02928 TRANSFAC - 40857715 40857729 4.0E-06 AATGCTTAGAACACA 15 V_NFY_01_M00287 TRANSFAC - 40857307 40857322 1.0E-05 CTCGACCAATCGACGC 16 V_BDP1_01_M01796 TRANSFAC - 40857465 40857476 8.0E-06 GGACTGGAACCC 12 V_STAT1STAT1_Q3_M01212 TRANSFAC - 40857384 40857396 5.0E-06 GTTTCCCGGCAAC 13 V_STAT6_02_M00500 TRANSFAC - 40857227 40857234 1.0E-05 GATTTCCT 8 V_RSRFC4_01_M00026 TRANSFAC - 40861298 40861313 8.0E-06 ACGTTATTTATAAAGG 16 V_SAP1A_03_M02058 TRANSFAC + 40856847 40856856 9.0E-06 GCCGGAAGTA 10 V_SOX14_04_M02901 TRANSFAC - 40859576 40859592 0.0E+00 CTTTTGGGTGGGGAATT 17 V_HSF2_02_M01244 TRANSFAC - 40857573 40857585 4.0E-06 GAAATTTTTAGAA 13 V_EWSR1FLI1_01_M02252 TRANSFAC - 40857620 40857637 4.0E-06 GAGAGTAAGGAAAGAAGC 18 V_EFC_Q6_M00626 TRANSFAC - 40857247 40857260 7.0E-06 CGTCACTAGGGGAC 14 V_SOX15_04_M02903 TRANSFAC + 40861400 40861414 6.0E-06 CCTAATTTAATTCGA 15 V_MEF2_01_M00006 TRANSFAC + 40861299 40861314 2.0E-06 CTTTATAAATAACGTC 16 V_HMEF2_Q6_M00406 TRANSFAC + 40861299 40861314 1.0E-06 CTTTATAAATAACGTC 16 V_TCFAP2E_03_M02822 TRANSFAC + 40856791 40856805 2.0E-06 GCTGCCTGAGGCAAG 15 V_RORA2_01_M00157 TRANSFAC - 40861396 40861408 9.0E-06 TAAATTAGGTGAA 13 V_NANOG_02_M01247 TRANSFAC - 40861180 40861199 3.0E-06 TATTTAAGACAAAACAAAAA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.