Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

GIF Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 2694 gastric intrinsic factor (vitamin B synthesis) chr11 - 59612474 - 59617974 59612974 Transcription Factor Binding Sites   Download all TFBS in the GIF promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 59616781 59616796 8.0E-06 TTGTATTATAAATTAC 16 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 59616847 59616858 5.0E-06 TTAGTAAATAAT 12 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 59616619 59616633 1.0E-05 TAAATAACAAAATTA 15 ZNF435_C2H2_full_dimeric_18_1 SELEX + 59616980 59616997 3.0E-06 TTTGGTATCAAAGCACCT 18 HNF1B_MA0153.1 JASPAR - 59616920 59616931 1.0E-06 TCAATAGTTAAC 12 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 59616847 59616857 9.0E-06 TTAGTAAATAA 11 MAFF_bZIP_DBD_dimeric_15_1 SELEX - 59617044 59617058 2.0E-06 TTGCTGCCACAGCAA 15 Pax4_MA0068.1 JASPAR - 59617013 59617042 5.0E-06 GAATAATCACCACAAATAAACCTCACTTAT 30 POU4F3_POU_DBD_monomeric_16_1 SELEX + 59616781 59616796 8.0E-06 TTGTATTATAAATTAC 16 PROP1_homeodomain_full_dimeric_11_1 SELEX + 59616623 59616633 7.0E-06 TAACAAAATTA 11 POU3F3_POU_DBD_monomeric_13_1 SELEX - 59616790 59616802 6.0E-06 TAAATGGTAATTT 13 ELF3_ETS_full_monomeric_13_1 SELEX - 59616773 59616785 5.0E-06 TACAAGGAAGTGA 13 ELF3_ETS_full_monomeric_13_1 SELEX - 59616950 59616962 9.0E-06 AACAAGGAAATAA 13 HOXA5_MA0158.1 JASPAR - 59616629 59616636 7.0E-06 CACTAATT 8 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 59616919 59616933 7.0E-06 GGTTAACTATTGACT 15 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 59616919 59616933 4.0E-06 AGTCAATAGTTAACC 15 Mafb_bZIP_DBD_dimeric_17_1 SELEX + 59617043 59617059 2.0E-06 TTTGCTGTGGCAGCAAA 17 Mafb_bZIP_DBD_dimeric_17_1 SELEX - 59617043 59617059 2.0E-06 TTTGCTGCCACAGCAAA 17 MAFK_bZIP_full_dimeric_15_1 SELEX + 59617044 59617058 8.0E-06 TTGCTGTGGCAGCAA 15 SOX7_HMG_full_dimeric_17_1 SELEX + 59616623 59616639 8.0E-06 TAACAAAATTAGTGGTA 17 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 59617041 59617061 1.0E-05 TCTTTGCTGTGGCAGCAAAAG 21 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 59617041 59617061 4.0E-06 CTTTTGCTGCCACAGCAAAGA 21 HNF1B_homeodomain_full_dimeric_13_1 SELEX + 59616920 59616932 5.0E-06 GTTAACTATTGAC 13 HNF1B_homeodomain_full_dimeric_13_1 SELEX - 59616920 59616932 7.0E-06 GTCAATAGTTAAC 13 HESX1_homeodomain_DBD_dimeric_15_1 SELEX - 59616789 59616803 4.0E-06 GTAAATGGTAATTTA 15 LHX9_homeodomain_DBD_dimeric_13_1 SELEX + 59616790 59616802 8.0E-06 AAATTACCATTTA 13 MAFG_bZIP_full_dimeric_21_1 SELEX + 59617041 59617061 4.0E-06 TCTTTGCTGTGGCAGCAAAAG 21 MAFG_bZIP_full_dimeric_21_1 SELEX - 59617041 59617061 6.0E-06 CTTTTGCTGCCACAGCAAAGA 21 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 59616919 59616933 6.0E-06 GGTTAACTATTGACT 15 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 59616919 59616933 3.0E-06 AGTCAATAGTTAACC 15 ELF5_MA0136.1 JASPAR + 59616951 59616959 2.0E-06 TATTTCCTT 9 ELF5_MA0136.1 JASPAR - 59617059 59617067 9.0E-06 AACTTCCTT 9 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 59616943 59616955 3.0E-06 AAATAAATGAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 59616941 59616953 1.0E-05 ATAAATGAACACA 13 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 59616847 59616857 7.0E-06 TTAGTAAATAA 11 HNF1A_MA0046.1 JASPAR + 59616849 59616862 9.0E-06 AGTAAATAATTCCC 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 59616850 59616863 9.0E-06 GTAAATAATTCCCA 14 V_FOXP1_01_M00987 TRANSFAC + 59617024 59617043 0.0E+00 TTATTTGTGGTGATTATTCT 20 V_HNF3B_01_M00131 TRANSFAC - 59616847 59616861 2.0E-06 GGAATTATTTACTAA 15 V_DBX1_01_M01483 TRANSFAC + 59616786 59616802 5.0E-06 TTATAAATTACCATTTA 17 V_TCF3_01_M01594 TRANSFAC - 59616619 59616631 5.0E-06 ATTTTGTTATTTA 13 V_FLI1_Q6_M01208 TRANSFAC - 59616772 59616782 9.0E-06 AAGGAAGTGAG 11 V_OSF2_Q6_M00731 TRANSFAC - 59617027 59617034 1.0E-05 ACCACAAA 8 V_XFD1_01_M00267 TRANSFAC + 59616847 59616860 1.0E-06 TTAGTAAATAATTC 14 V_SOX14_05_M02902 TRANSFAC + 59616829 59616843 4.0E-06 GTGACACAATTGTTG 15 V_SRY_07_M02813 TRANSFAC + 59616781 59616796 9.0E-06 TTGTATTATAAATTAC 16 V_FOXA2_04_M02749 TRANSFAC + 59616845 59616861 2.0E-06 AGTTAGTAAATAATTCC 17 V_HNF1_02_M01379 TRANSFAC + 59616915 59616931 3.0E-06 CCTTGGTTAACTATTGA 17 V_TCF4_Q5_01_M02033 TRANSFAC + 59616986 59616995 2.0E-06 ATCAAAGCAC 10 V_HOXA13_02_M01297 TRANSFAC - 59617021 59617029 3.0E-06 AAATAAACC 9 V_PROP1_01_M01294 TRANSFAC - 59616623 59616633 3.0E-06 TAATTTTGTTA 11 V_NERF_Q2_M00531 TRANSFAC - 59616768 59616785 8.0E-06 TACAAGGAAGTGAGTGGT 18 V_SOX21_03_M02803 TRANSFAC + 59616781 59616796 3.0E-06 TTGTATTATAAATTAC 16 V_CETS1P54_02_M00074 TRANSFAC + 59617056 59617068 5.0E-06 CAAAAGGAAGTTT 13 V_ELF4_04_M02850 TRANSFAC + 59616616 59616632 9.0E-06 TCTTAAATAACAAAATT 17 V_FOXA2_02_M02853 TRANSFAC + 59616618 59616632 1.0E-06 TTAAATAACAAAATT 15 V_FREAC3_01_M00291 TRANSFAC + 59616845 59616860 5.0E-06 AGTTAGTAAATAATTC 16 V_LMX1_01_M01409 TRANSFAC - 59616845 59616861 8.0E-06 GGAATTATTTACTAACT 17 V_ZFP105_03_M02827 TRANSFAC + 59616617 59616631 1.0E-06 CTTAAATAACAAAAT 15 V_ARID5A_03_M02736 TRANSFAC + 59616973 59616986 9.0E-06 CTAATATTTTGGTA 14 V_HNF1_Q6_M00790 TRANSFAC + 59616848 59616865 2.0E-06 TAGTAAATAATTCCCAGA 18 V_HNF1B_04_M02266 TRANSFAC - 59616920 59616931 1.0E-06 TCAATAGTTAAC 12 V_FOXK1_04_M02856 TRANSFAC + 59616619 59616633 6.0E-06 TAAATAACAAAATTA 15 V_HNF1_Q6_01_M01011 TRANSFAC - 59616916 59616936 6.0E-06 CCCAGTCAATAGTTAACCAAG 21 V_ELF5_01_M01197 TRANSFAC - 59616951 59616961 2.0E-06 ACAAGGAAATA 11 V_ELF5_01_M01197 TRANSFAC + 59617057 59617067 1.0E-06 AAAAGGAAGTT 11 V_OCT1_04_M00138 TRANSFAC - 59616779 59616801 7.0E-06 AAATGGTAATTTATAATACAAGG 23 V_OCT1_04_M00138 TRANSFAC - 59616785 59616807 7.0E-06 GGTTGTAAATGGTAATTTATAAT 23 V_SPIB_01_M01204 TRANSFAC + 59617054 59617070 3.0E-06 AGCAAAAGGAAGTTTCT 17 V_HOXA5_03_M02271 TRANSFAC - 59616629 59616636 7.0E-06 CACTAATT 8 V_NCX_02_M01420 TRANSFAC - 59616844 59616860 3.0E-06 GAATTATTTACTAACTG 17 V_HB24_01_M01399 TRANSFAC + 59616783 59616797 8.0E-06 GTATTATAAATTACC 15 V_TBP_06_M02814 TRANSFAC - 59616781 59616796 4.0E-06 GTAATTTATAATACAA 16 V_TBP_06_M02814 TRANSFAC + 59616783 59616798 9.0E-06 GTATTATAAATTACCA 16 V_MTF1_06_M02882 TRANSFAC + 59616620 59616633 4.0E-06 AAATAACAAAATTA 14 V_TBP_01_M00471 TRANSFAC + 59616787 59616794 8.0E-06 TATAAATT 8 V_HOXB8_01_M01451 TRANSFAC - 59616785 59616800 3.0E-06 AATGGTAATTTATAAT 16 V_HNF1_01_M00132 TRANSFAC + 59616849 59616863 7.0E-06 AGTAAATAATTCCCA 15 V_FOXJ3_06_M02855 TRANSFAC - 59616972 59616988 7.0E-06 GATACCAAAATATTAGG 17 V_CBF_01_M01079 TRANSFAC + 59616628 59616643 7.0E-06 AAATTAGTGGTAATCT 16 V_TCF7_04_M02921 TRANSFAC + 59616781 59616795 0.0E+00 TTGTATTATAAATTA 15 V_TCF1_06_M02815 TRANSFAC - 59616914 59616930 3.0E-06 CAATAGTTAACCAAGGA 17 V_TCF1_06_M02815 TRANSFAC + 59616915 59616931 1.0E-06 CCTTGGTTAACTATTGA 17 V_ETS1_B_M00339 TRANSFAC - 59616769 59616783 8.0E-06 CAAGGAAGTGAGTGG 15 V_HOXC5_01_M01454 TRANSFAC - 59616845 59616861 7.0E-06 GGAATTATTTACTAACT 17 V_OCT1_07_M00248 TRANSFAC - 59616791 59616802 2.0E-06 TAAATGGTAATT 12 V_SRF_06_M02916 TRANSFAC + 59616617 59616633 8.0E-06 CTTAAATAACAAAATTA 17 V_HNF1A_Q5_M02013 TRANSFAC + 59616849 59616859 5.0E-06 AGTAAATAATT 11 V_SATB1_01_M01232 TRANSFAC + 59616784 59616795 9.0E-06 TATTATAAATTA 12 V_HNF3B_Q6_M02014 TRANSFAC - 59616849 59616857 6.0E-06 TTATTTACT 9 V_MEF2_01_M00006 TRANSFAC - 59616898 59616913 7.0E-06 CTGTCAAAATATCCCT 16 V_HMEF2_Q6_M00406 TRANSFAC + 59616784 59616799 4.0E-06 TATTATAAATTACCAT 16 V_ELF5_04_M02241 TRANSFAC + 59616951 59616959 2.0E-06 TATTTCCTT 9 V_ELF5_04_M02241 TRANSFAC - 59617059 59617067 9.0E-06 AACTTCCTT 9 V_HNF1A_01_M02162 TRANSFAC + 59616849 59616862 9.0E-06 AGTAAATAATTCCC 14 V_GLIS2_04_M02863 TRANSFAC - 59616616 59616629 3.0E-06 TTTGTTATTTAAGA 14 V_PAX4_04_M00380 TRANSFAC - 59616934 59616963 3.0E-06 AAACAAGGAAATAAATGAACACATCATCCC 30 V_SOX14_03_M02798 TRANSFAC + 59616781 59616796 8.0E-06 TTGTATTATAAATTAC 16 V_SOX14_03_M02798 TRANSFAC - 59616781 59616796 7.0E-06 GTAATTTATAATACAA 16 V_OCT4_01_M01125 TRANSFAC - 59616616 59616630 8.0E-06 TTTTGTTATTTAAGA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.