Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

BEST4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 266675 bestrophin 4 chr1 - 45252926 - 45258426 45253426 Transcription Factor Binding Sites   Download all TFBS in the BEST4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_monomeric_8_1 SELEX - 45257358 45257365 5.0E-06 ATAAACAA 8 Myc_MA0147.1 JASPAR - 45252143 45252152 7.0E-06 AGCACGTGGT 10 FOXF2_MA0030.1 JASPAR - 45257357 45257370 2.0E-06 GCACCATAAACAAA 14 MAX_bHLH_DBD_dimeric_10_1 SELEX + 45252143 45252152 1.0E-06 ACCACGTGCT 10 LEF1_HMG_DBD_monomeric_15_1 SELEX + 45256732 45256746 2.0E-06 TAAGATGAAAGACAT 15 MNT_bHLH_DBD_dimeric_10_1 SELEX + 45252143 45252152 2.0E-06 ACCACGTGCT 10 SP1_MA0079.2 JASPAR - 45249986 45249995 7.0E-06 CCCCGCCCCC 10 NFAT5_NFAT_DBD_dimeric_14_1 SELEX + 45256802 45256815 3.0E-06 CTGGAAAACTACTC 14 Tcf7_HMG_DBD_monomeric_12_1 SELEX + 45256732 45256743 7.0E-06 TAAGATGAAAGA 12 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 45252396 45252410 8.0E-06 AGGAAGGGAGAGTGG 15 TFAP4_bHLH_full_dimeric_10_1 SELEX - 45252296 45252305 3.0E-06 ACCAGCTGAT 10 TFAP4_bHLH_full_dimeric_10_1 SELEX - 45257337 45257346 9.0E-06 AACAGCTGAG 10 Foxj3_forkhead_DBD_monomeric_8_1 SELEX - 45257358 45257365 5.0E-06 ATAAACAA 8 Hic1_C2H2_DBD_dimeric_18_1 SELEX - 45249811 45249828 9.0E-06 GTGCCCGGTCCTGCCAGC 18 V_FOXP1_01_M00987 TRANSFAC + 45256902 45256921 4.0E-06 GTATGTGTGTGTGTGTGTGT 20 V_FOXP1_01_M00987 TRANSFAC + 45256904 45256923 5.0E-06 ATGTGTGTGTGTGTGTGTGT 20 V_MEIS1_02_M01419 TRANSFAC + 45256843 45256858 6.0E-06 TGGGAGATGTCAATAT 16 V_APOLYA_B_M00310 TRANSFAC - 45249455 45249469 7.0E-06 AATAACTTGCATTTC 15 V_ZFX_01_M01593 TRANSFAC - 45249932 45249947 4.0E-06 CCCGAGGCCGCAGCCC 16 V_GABP_B_M00341 TRANSFAC + 45249965 45249976 2.0E-06 CCCGGAAGCGCA 12 V_NFAT3_Q3_M01734 TRANSFAC + 45251871 45251880 6.0E-06 ACTTTTTCCT 10 V_AP4_Q6_M00176 TRANSFAC + 45252296 45252305 8.0E-06 ATCAGCTGGT 10 V_AP4_Q6_M00176 TRANSFAC + 45257337 45257346 8.0E-06 CTCAGCTGTT 10 V_AP2_Q6_01_M00915 TRANSFAC + 45257287 45257299 1.0E-06 CGGTCCCCAGGCC 13 V_FOXJ1_03_M02750 TRANSFAC - 45257353 45257368 4.0E-06 ACCATAAACAAAGGGA 16 V_SP1_03_M02281 TRANSFAC - 45249986 45249995 7.0E-06 CCCCGCCCCC 10 V_SP1_02_M01303 TRANSFAC + 45249987 45249997 3.0E-06 GGGGCGGGGGG 11 V_COUPTF_Q6_M01036 TRANSFAC + 45257252 45257274 4.0E-06 GTACGTGACCTGAAGCCTCTGCC 23 V_CMYC_02_M01154 TRANSFAC - 45252142 45252153 8.0E-06 GAGCACGTGGTG 12 V_FOXP3_01_M01599 TRANSFAC - 45257358 45257365 5.0E-06 ATAAACAA 8 V_MYC_01_M02250 TRANSFAC - 45252143 45252152 7.0E-06 AGCACGTGGT 10 V_ZNF219_01_M01122 TRANSFAC - 45249988 45249999 5.0E-06 CACCCCCCGCCC 12 V_MEIS2_01_M01488 TRANSFAC + 45256843 45256858 7.0E-06 TGGGAGATGTCAATAT 16 V_CMYC_01_M01145 TRANSFAC + 45252142 45252153 1.0E-06 CACCACGTGCTC 12 V_RFX1_01_M00280 TRANSFAC + 45252354 45252370 6.0E-06 GAGTCACATAGAAACCT 17 V_SP1_Q6_M00196 TRANSFAC + 45249985 45249997 6.0E-06 GGGGGGCGGGGGG 13 MYC_MAX_MA0059.1 JASPAR - 45252143 45252153 1.0E-06 GAGCACGTGGT 11 V_AP4_Q5_M00175 TRANSFAC + 45252296 45252305 3.0E-06 ATCAGCTGGT 10 V_AP4_Q5_M00175 TRANSFAC + 45257337 45257346 3.0E-06 CTCAGCTGTT 10 V_TCF7_03_M02817 TRANSFAC + 45256731 45256747 4.0E-06 TTAAGATGAAAGACATC 17 V_TAXCREB_02_M00115 TRANSFAC + 45252287 45252301 9.0E-06 ATGACGCACATCAGC 15 V_SOX11_03_M02795 TRANSFAC - 45257351 45257367 8.0E-06 CCATAAACAAAGGGACT 17 V_FOXO1_Q5_M01216 TRANSFAC - 45257357 45257365 2.0E-06 ATAAACAAA 9 V_TAL1BETAITF2_01_M00070 TRANSFAC - 45256739 45256754 2.0E-06 GGGACCAGATGTCTTT 16 V_SP4_Q5_M01273 TRANSFAC - 45249986 45249996 5.0E-06 CCCCCGCCCCC 11 V_FREAC2_01_M00290 TRANSFAC - 45257355 45257370 6.0E-06 GCACCATAAACAAAGG 16 V_OCT1_Q6_M00195 TRANSFAC + 45249454 45249468 1.0E-05 AGAAATGCAAGTTAT 15 V_HEN1_02_M00058 TRANSFAC - 45252124 45252145 3.0E-06 GGTGGACGCAGGTGCGCCGCCC 22 V_SOX4_01_M01308 TRANSFAC - 45257355 45257362 1.0E-05 AACAAAGG 8 V_PLAGL1_03_M02786 TRANSFAC + 45250037 45250052 2.0E-06 GGGAGGGCGCCCCTAC 16 V_FOXO1_01_M00473 TRANSFAC - 45257357 45257366 1.0E-06 CATAAACAAA 10 V_SP1_Q2_01_M00933 TRANSFAC - 45249986 45249995 4.0E-06 CCCCGCCCCC 10 V_SMAD1_01_M01590 TRANSFAC - 45257354 45257365 6.0E-06 ATAAACAAAGGG 12 V_SOX9_Q4_M01284 TRANSFAC - 45257353 45257363 0.0E+00 AAACAAAGGGA 11 V_T3RALPHA_Q6_M01724 TRANSFAC - 45257256 45257266 6.0E-06 CTTCAGGTCAC 11

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.