Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

OPTC Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 26254 opticin chr1 + 203458270 - 203463770 203463270 Transcription Factor Binding Sites   Download all TFBS in the OPTC promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP3_C2H2_DBD_monomeric_11_1 SELEX - 203461243 203461253 7.0E-06 GCCACACCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 203461243 203461253 4.0E-06 GCCACACCCCC 11 POU2F2_POU_DBD_monomeric_11_1 SELEX - 203461343 203461353 8.0E-06 AAATGCAAATG 11 POU3F4_POU_DBD_monomeric_9_1 SELEX - 203461344 203461352 7.0E-06 AATGCAAAT 9 ZNF238_C2H2_full_monomeric_13_1 SELEX - 203463168 203463180 7.0E-06 TGTCCAGCTGTTT 13 RARG_nuclearreceptor_full_dimeric_18_1 SELEX + 203460737 203460754 7.0E-06 AGGGTCATGTTCCGGTCA 18 RARA_nuclearreceptor_full_dimeric_17_1 SELEX + 203460738 203460754 7.0E-06 GGGTCATGTTCCGGTCA 17 SP1_C2H2_DBD_monomeric_11_1 SELEX - 203461243 203461253 8.0E-06 GCCACACCCCC 11 RORA_nuclearreceptor_DBD_dimeric_20_1 SELEX + 203460735 203460754 2.0E-06 AGAGGGTCATGTTCCGGTCA 20 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 203464788 203464798 9.0E-06 TTTGTAAACAA 11 RXR_RAR_DR5_MA0159.1 JASPAR + 203460738 203460754 4.0E-06 GGGTCATGTTCCGGTCA 17 V_XFD1_01_M00267 TRANSFAC + 203464788 203464801 5.0E-06 TTTGTAAACAAGGG 14 V_FOXA2_04_M02749 TRANSFAC + 203464786 203464802 8.0E-06 CGTTTGTAAACAAGGGG 17 V_FOXO4_02_M00476 TRANSFAC - 203464788 203464801 7.0E-06 CCCTTGTTTACAAA 14 V_RP58_01_M00532 TRANSFAC + 203463167 203463178 8.0E-06 GAAACAGCTGGA 12 V_POU2F3_01_M01476 TRANSFAC - 203461340 203461355 6.0E-06 AGAAATGCAAATGCGA 16 V_SPZ1_01_M00446 TRANSFAC + 203461269 203461283 1.0E-05 GCAGGAGCGTATGTC 15 V_OCT_C_M00210 TRANSFAC + 203461341 203461353 4.0E-06 CGCATTTGCATTT 13 V_E2A_Q2_M00804 TRANSFAC + 203460903 203460916 6.0E-06 CCACCTGCCGCCTC 14 V_GM497_04_M02864 TRANSFAC - 203464772 203464787 4.0E-06 CGAGGCACACACTGGT 16 V_NFY_C_M00209 TRANSFAC + 203463198 203463211 2.0E-06 TCTGATTGGTCGCA 14 V_TAL1_Q6_M00993 TRANSFAC - 203463169 203463178 7.0E-06 TCCAGCTGTT 10 V_COMP1_01_M00057 TRANSFAC + 203461217 203461240 1.0E-06 TGTATGCATTGGGGAGGAACGATG 24 V_POU3F2_01_M00463 TRANSFAC - 203461359 203461372 5.0E-06 ACACATTTATTCCT 14 V_FREAC3_01_M00291 TRANSFAC + 203464786 203464801 8.0E-06 CGTTTGTAAACAAGGG 16 V_FKLF_Q5_M01837 TRANSFAC + 203461373 203461382 2.0E-06 GGGGTGGGAG 10 V_OCT1_05_M00161 TRANSFAC + 203461341 203461354 1.0E-06 CGCATTTGCATTTC 14 V_XFD2_01_M00268 TRANSFAC + 203464788 203464801 5.0E-06 TTTGTAAACAAGGG 14 V_OCT1_B_M00342 TRANSFAC - 203461343 203461352 5.0E-06 AATGCAAATG 10 V_OCT_Q6_M00795 TRANSFAC + 203461342 203461352 8.0E-06 GCATTTGCATT 11 V_NFYC_Q5_M02107 TRANSFAC - 203463196 203463209 7.0E-06 CGACCAATCAGACT 14 V_E2F_Q6_01_M00920 TRANSFAC + 203461466 203461477 7.0E-06 AGCCCGCCAAAT 12 V_OCT2_01_M01368 TRANSFAC - 203461340 203461355 6.0E-06 AGAAATGCAAATGCGA 16 V_OCT1_Q6_M00195 TRANSFAC - 203461341 203461355 1.0E-06 AGAAATGCAAATGCG 15 V_FOXL1_04_M02753 TRANSFAC + 203464786 203464802 5.0E-06 CGTTTGTAAACAAGGGG 17 V_FOXO3_01_M00477 TRANSFAC - 203464788 203464801 1.0E-06 CCCTTGTTTACAAA 14 V_TITF1_Q3_M00432 TRANSFAC + 203464887 203464896 4.0E-06 ACTCAAGTGG 10 V_E2F_Q4_01_M00919 TRANSFAC + 203461467 203461477 6.0E-06 GCCCGCCAAAT 11 V_RXR_RAR_01_M02272 TRANSFAC + 203460738 203460754 4.0E-06 GGGTCATGTTCCGGTCA 17 V_UF1H3BETA_Q6_M01068 TRANSFAC + 203461240 203461253 3.0E-06 GGTGGGGGTGTGGC 14 V_SMAD_Q6_M00792 TRANSFAC - 203461547 203461555 3.0E-06 AGACACCAT 9 V_FOXK1_03_M02752 TRANSFAC + 203464786 203464802 3.0E-06 CGTTTGTAAACAAGGGG 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.