Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

FBXW2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 26190 F-box and WD repeat domain containing 2 chr9 - 123555240 - 123560740 123555740 Transcription Factor Binding Sites   Download all TFBS in the FBXW2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX21_HMG_DBD_dimeric_15_1 SELEX + 123556320 123556334 5.0E-06 AGCAATTATAGTGAG 15 GABPA_MA0062.2 JASPAR - 123555744 123555754 3.0E-06 CCGGAAGTGCA 11 Pax6_MA0069.1 JASPAR + 123553718 123553731 1.0E-06 TTTAAGCTTCAGTT 14 FLI1_ETS_full_monomeric_10_1 SELEX - 123555746 123555755 2.0E-06 ACCGGAAGTG 10 ETV5_ETS_DBD_monomeric_10_1 SELEX - 123555746 123555755 3.0E-06 ACCGGAAGTG 10 ERG_ETS_full_monomeric_10_1 SELEX - 123555746 123555755 1.0E-06 ACCGGAAGTG 10 ETV3_ETS_DBD_monomeric_10_1 SELEX - 123555746 123555755 1.0E-06 ACCGGAAGTG 10 FEV_ETS_DBD_monomeric_10_1 SELEX - 123555746 123555755 2.0E-06 ACCGGAAGTG 10 SOX8_HMG_full_dimeric_15_1 SELEX + 123556320 123556334 7.0E-06 AGCAATTATAGTGAG 15 SOX8_HMG_full_dimeric_17_1 SELEX + 123556319 123556335 3.0E-06 TAGCAATTATAGTGAGG 17 ETV1_ETS_DBD_monomeric_10_1 SELEX - 123555746 123555755 2.0E-06 ACCGGAAGTG 10 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 123556432 123556445 5.0E-06 AAAAAATGTTGAGA 14 Pax4_MA0068.1 JASPAR - 123553620 123553649 9.0E-06 AAGTATTTTCATTTATCACATTCTGCCTCT 30 ZNF238_C2H2_full_monomeric_13_1 SELEX + 123553657 123553669 2.0E-06 TGGCCAGATGTTT 13 ETV2_ETS_DBD_monomeric_11_1 SELEX - 123555746 123555756 1.0E-05 GACCGGAAGTG 11 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 123556432 123556445 7.0E-06 AAAAAATGTTGAGA 14 ETS1_ETS_full_monomeric_10_1 SELEX - 123555746 123555755 3.0E-06 ACCGGAAGTG 10 ETV4_ETS_DBD_monomeric_10_1 SELEX - 123555746 123555755 4.0E-06 ACCGGAAGTG 10 ELK4_ETS_DBD_monomeric_10_1 SELEX - 123555746 123555755 2.0E-06 ACCGGAAGTG 10 ELK1_ETS_full_dimeric_17_1 SELEX + 123555725 123555741 4.0E-06 GGCTCCCGGCGGAAGCG 17 ELK1_ETS_full_dimeric_17_1 SELEX - 123555725 123555741 1.0E-06 CGCTTCCGCCGGGAGCC 17 Mafb_bZIP_DBD_dimeric_17_1 SELEX - 123556304 123556320 9.0E-06 TATGCAGATGAAGCAAA 17 ELK4_MA0076.1 JASPAR - 123555747 123555755 4.0E-06 ACCGGAAGT 9 SOX9_HMG_full_dimeric_16_3 SELEX - 123555271 123555286 9.0E-06 ATGAGTTAACAGTGAT 16 ERF_ETS_DBD_monomeric_10_1 SELEX - 123555746 123555755 1.0E-06 ACCGGAAGTG 10 ELK1_ETS_full_monomeric_10_1 SELEX - 123555746 123555755 2.0E-06 ACCGGAAGTG 10 Pou5f1_MA0142.1 JASPAR - 123556312 123556326 1.0E-05 AATTGCTATGCAGAT 15 GABPA_ETS_full_monomeric_10_1 SELEX - 123555746 123555755 2.0E-06 ACCGGAAGTG 10 Elk3_ETS_DBD_monomeric_10_1 SELEX - 123555746 123555755 2.0E-06 ACCGGAAGTG 10 ETV6_ETS_full_monomeric_10_1 SELEX - 123555746 123555755 3.0E-06 ACCGGAAGTG 10 ETV6_ETS_full_dimeric_15_1 SELEX - 123555746 123555760 7.0E-06 CGGGGACCGGAAGTG 15 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 123553634 123553646 2.0E-06 ATAAATGAAAATA 13 RREB1_MA0073.1 JASPAR - 123555763 123555782 8.0E-06 CCTCCCACCACCCACCTCCG 20 RREB1_MA0073.1 JASPAR + 123556465 123556484 7.0E-06 TCCCACAACAACCCCACAAG 20 V_ERG_03_M02062 TRANSFAC - 123555746 123555755 2.0E-06 ACCGGAAGTG 10 V_ERM_01_M01992 TRANSFAC - 123555746 123555755 3.0E-06 ACCGGAAGTG 10 V_SAP1A_01_M01167 TRANSFAC - 123555678 123555688 8.0E-06 CACCGGAAGCC 11 V_SAP1A_01_M01167 TRANSFAC - 123555746 123555756 3.0E-06 GACCGGAAGTG 11 V_ELK1_04_M01165 TRANSFAC - 123555746 123555756 1.0E-06 GACCGGAAGTG 11 V_GEN_INI_B_M00315 TRANSFAC + 123555981 123555988 1.0E-05 CCTCATTT 8 V_GABPA_02_M02074 TRANSFAC - 123555746 123555755 8.0E-06 ACCGGAAGTG 10 V_DLX3_01_M01400 TRANSFAC - 123556317 123556333 9.0E-06 TCACTATAATTGCTATG 17 V_BCL6_01_M01183 TRANSFAC + 123553635 123553650 8.0E-06 TAAATGAAAATACTTT 16 V_BCL6_01_M01183 TRANSFAC - 123555544 123555559 9.0E-06 TTGGCTGTTTTTCTTT 16 V_CETS1_01_M01986 TRANSFAC - 123555746 123555755 4.0E-06 ACCGGAAGTG 10 V_LMAF_Q2_M01139 TRANSFAC + 123555569 123555577 6.0E-06 GGTCAGCAG 9 V_POU5F1_02_M02245 TRANSFAC - 123556312 123556326 1.0E-05 AATTGCTATGCAGAT 15 V_ETV3_01_M01990 TRANSFAC - 123555746 123555755 3.0E-06 ACCGGAAGTG 10 V_GABP_B_M00341 TRANSFAC - 123555744 123555755 0.0E+00 ACCGGAAGTGCA 12 V_RP58_01_M00532 TRANSFAC - 123553659 123553670 1.0E-06 AAAACATCTGGC 12 V_FOXJ1_03_M02750 TRANSFAC - 123556439 123556454 4.0E-06 ATGGTACACAAAAAAT 16 V_SP1_02_M01303 TRANSFAC + 123555799 123555809 5.0E-06 GGGGTGGGGAG 11 V_HTF_01_M00538 TRANSFAC - 123556018 123556041 1.0E-06 GAATTTGGACACGTCTCTTAACTT 24 V_CETS2_02_M02064 TRANSFAC - 123555746 123555755 6.0E-06 ACCGGAAGTG 10 V_PEA3_01_M01991 TRANSFAC - 123555746 123555755 2.0E-06 ACCGGAAGTG 10 RXRA_VDR_MA0074.1 JASPAR - 123555209 123555223 3.0E-06 GGTTTATGAAGTACA 15 V_FLI1_01_M02038 TRANSFAC - 123555746 123555755 2.0E-06 ACCGGAAGTG 10 V_ELK1_06_M02059 TRANSFAC - 123555746 123555755 3.0E-06 ACCGGAAGTG 10 V_GEN_INI3_B_M00314 TRANSFAC + 123555981 123555988 1.0E-05 CCTCATTT 8 V_ELK1_05_M01981 TRANSFAC - 123555746 123555755 5.0E-06 ACCGGAAGTG 10 V_SAP1A_02_M01983 TRANSFAC - 123555746 123555755 3.0E-06 ACCGGAAGTG 10 V_FLI1_02_M02073 TRANSFAC - 123555746 123555755 5.0E-06 ACCGGAAGTG 10 V_PET1_02_M02072 TRANSFAC - 123555746 123555755 6.0E-06 ACCGGAAGTG 10 V_GFI1_01_M00250 TRANSFAC + 123553526 123553549 6.0E-06 AGCTTTTAAATCTCAGCGCTTTCC 24 V_HIC1_03_M01073 TRANSFAC - 123555860 123555877 8.0E-06 CTAGGTTGCACCCAGCCT 18 V_ERF_01_M01984 TRANSFAC - 123555746 123555755 3.0E-06 ACCGGAAGTG 10 V_ER81_02_M02065 TRANSFAC - 123555746 123555755 2.0E-06 ACCGGAAGTG 10 V_EVI1_01_M00078 TRANSFAC + 123556014 123556029 1.0E-06 AGAGAAGTTAAGAGAC 16 V_MAZ_Q6_01_M02023 TRANSFAC + 123555989 123556002 6.0E-06 TACGGAGGAGAGGG 14 V_ERG_01_M01752 TRANSFAC - 123555747 123555755 4.0E-06 ACCGGAAGT 9 V_GABPA_01_M02039 TRANSFAC - 123555746 123555755 3.0E-06 ACCGGAAGTG 10 V_CETS2_01_M01989 TRANSFAC - 123555746 123555755 3.0E-06 ACCGGAAGTG 10 V_GADP_01_M01258 TRANSFAC + 123555746 123555757 1.0E-06 CACTTCCGGTCC 12 V_NFE4_Q5_M02105 TRANSFAC - 123555993 123556004 5.0E-06 CTCCCTCTCCTC 12 V_OCT1_04_M00138 TRANSFAC - 123556305 123556327 1.0E-05 TAATTGCTATGCAGATGAAGCAA 23 V_PET1_01_M02037 TRANSFAC - 123555746 123555755 3.0E-06 ACCGGAAGTG 10 V_TAL1BETAE47_01_M00065 TRANSFAC + 123553656 123553671 1.0E-05 TTGGCCAGATGTTTTA 16 V_BBX_04_M02843 TRANSFAC - 123555271 123555287 5.0E-06 AATGAGTTAACAGTGAT 17 V_CETS1P54_01_M00032 TRANSFAC - 123555746 123555755 5.0E-06 ACCGGAAGTG 10 V_PEA3_02_M02066 TRANSFAC - 123555746 123555755 2.0E-06 ACCGGAAGTG 10 V_ERF_02_M02061 TRANSFAC - 123555746 123555755 3.0E-06 ACCGGAAGTG 10 V_OCT4_02_M01124 TRANSFAC - 123556311 123556325 5.0E-06 ATTGCTATGCAGATG 15 V_GLI3_Q5_01_M01657 TRANSFAC + 123555768 123555776 6.0E-06 GTGGGTGGT 9 V_ER71_01_M01988 TRANSFAC - 123555746 123555755 5.0E-06 ACCGGAAGTG 10 V_NET_01_M01982 TRANSFAC - 123555746 123555755 3.0E-06 ACCGGAAGTG 10 V_ER81_01_M01987 TRANSFAC - 123555746 123555755 3.0E-06 ACCGGAAGTG 10 V_DLX7_01_M01486 TRANSFAC - 123556317 123556333 8.0E-06 TCACTATAATTGCTATG 17 V_ERM_02_M02069 TRANSFAC - 123555746 123555755 3.0E-06 ACCGGAAGTG 10 V_MTF1_06_M02882 TRANSFAC - 123555966 123555979 9.0E-06 TAATAAGAAAAACT 14 V_GABPBETA_Q3_M01876 TRANSFAC - 123555745 123555755 1.0E-06 ACCGGAAGTGC 11 V_TAL1ALPHAE47_01_M00066 TRANSFAC + 123553656 123553671 5.0E-06 TTGGCCAGATGTTTTA 16 V_OCT1_Q6_M00195 TRANSFAC + 123553634 123553648 7.0E-06 ATAAATGAAAATACT 15 V_PARP_Q3_M01211 TRANSFAC - 123555967 123555976 8.0E-06 TAAGAAAAAC 10 V_GEN_INI2_B_M00313 TRANSFAC + 123555981 123555988 1.0E-05 CCTCATTT 8 V_NRF2_01_M00108 TRANSFAC - 123555746 123555755 2.0E-06 ACCGGAAGTG 10 V_SAP1A_03_M02058 TRANSFAC - 123555746 123555755 2.0E-06 ACCGGAAGTG 10 V_IRF1_Q6_01_M01881 TRANSFAC - 123553633 123553646 6.0E-06 TATTTTCATTTATC 14 V_CETS1_02_M02063 TRANSFAC - 123555746 123555755 3.0E-06 ACCGGAAGTG 10 V_SRF_06_M02916 TRANSFAC - 123555964 123555980 6.0E-06 ATAATAAGAAAAACTAC 17 V_SOX1_03_M02802 TRANSFAC + 123553508 123553523 7.0E-06 TTTCAATTCAACATGA 16 V_NET_02_M02060 TRANSFAC - 123555746 123555755 4.0E-06 ACCGGAAGTG 10 V_ERG_02_M01985 TRANSFAC - 123555746 123555755 2.0E-06 ACCGGAAGTG 10 V_UF1H3BETA_Q6_M01068 TRANSFAC - 123555597 123555610 4.0E-06 GGTCGGGGAGGGGA 14 V_TCF11MAFG_01_M00284 TRANSFAC - 123555270 123555291 5.0E-06 GCGAAATGAGTTAACAGTGATG 22 V_ELK1_03_M01163 TRANSFAC - 123555746 123555756 1.0E-06 GACCGGAAGTG 11 V_ER71_02_M02067 TRANSFAC - 123555746 123555755 3.0E-06 ACCGGAAGTG 10 V_VDRRXR_01_M01202 TRANSFAC - 123555209 123555223 3.0E-06 GGTTTATGAAGTACA 15 V_PAX6_01_M00097 TRANSFAC + 123553714 123553734 1.0E-06 AACTTTTAAGCTTCAGTTTTA 21 V_ETV3_02_M02068 TRANSFAC - 123555746 123555755 2.0E-06 ACCGGAAGTG 10 V_T3RALPHA_Q6_M01724 TRANSFAC - 123555422 123555432 8.0E-06 GCTCAGGTCAG 11 V_OCT4_01_M01125 TRANSFAC - 123556312 123556326 4.0E-06 AATTGCTATGCAGAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.