Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ERC2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 26059 ELKS/RAB6-interacting/CAST family member 2 chr3 - 56501891 - 56507391 56502391 Transcription Factor Binding Sites   Download all TFBS in the ERC2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Foxa2_MA0047.2 JASPAR - 56501467 56501478 7.0E-06 TATTTATTTTGT 12 SOX21_HMG_DBD_dimeric_13_2 SELEX - 56502635 56502647 8.0E-06 GGAATGTGAGTCA 13 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 56501469 56501480 5.0E-06 AAAATAAATAAG 12 FOXL1_forkhead_full_dimeric_13_1 SELEX + 56501467 56501479 7.0E-06 ACAAAATAAATAA 13 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 56501469 56501479 3.0E-06 AAAATAAATAA 11 EWSR1-FLI1_MA0149.1 JASPAR + 56502438 56502455 0.0E+00 GGGAGGGAGGAAAGAAGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 56502442 56502459 3.0E-06 GGGAGGAAAGAAGGGAAG 18 EWSR1-FLI1_MA0149.1 JASPAR + 56502443 56502460 6.0E-06 GGAGGAAAGAAGGGAAGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 56502446 56502463 5.0E-06 GGAAAGAAGGGAAGGAGG 18 HOXD11_homeodomain_DBD_monomeric_10_1 SELEX - 56502312 56502321 9.0E-06 GTTGTAAAAA 10 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX - 56501512 56501521 1.0E-06 GGTAATAAAA 10 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 56501465 56501478 6.0E-06 GTACAAAATAAATA 14 HOXC11_homeodomain_full_monomeric_11_2 SELEX - 56501511 56501521 2.0E-06 GGTAATAAAAT 11 Gfi_MA0038.1 JASPAR + 56501190 56501199 3.0E-06 AAAATCACTG 10 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 56501468 56501478 7.0E-06 CAAAATAAATA 11 TEAD3_TEA_DBD_dimeric_17_1 SELEX + 56502641 56502657 0.0E+00 ACATTCCCAGCATTCCC 17 Hoxa11_homeodomain_DBD_monomeric_12_1 SELEX - 56502311 56502322 9.0E-06 GGTTGTAAAAAT 12 TEAD1_TEA_full_dimeric_17_1 SELEX + 56502641 56502657 0.0E+00 ACATTCCCAGCATTCCC 17 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX - 56501511 56501521 0.0E+00 GGTAATAAAAT 11 HOXC12_homeodomain_DBD_monomeric_11_1 SELEX - 56502312 56502322 7.0E-06 GGTTGTAAAAA 11 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 56501469 56501479 7.0E-06 AAAATAAATAA 11 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX - 56501511 56501521 0.0E+00 GGTAATAAAAT 11 V_HNF3B_01_M00131 TRANSFAC - 56501469 56501483 0.0E+00 TGCCTTATTTATTTT 15 V_FREAC7_01_M00293 TRANSFAC + 56501467 56501482 4.0E-06 ACAAAATAAATAAGGC 16 V_APOLYA_B_M00310 TRANSFAC + 56501361 56501375 7.0E-06 AGTAAATTGCCTTTC 15 V_DUXL_01_M01390 TRANSFAC - 56501257 56501273 7.0E-06 AGAACCAATCAATGCTC 17 V_XFD1_01_M00267 TRANSFAC + 56501469 56501482 1.0E-06 AAAATAAATAAGGC 14 V_HNF3_Q6_01_M01012 TRANSFAC - 56501466 56501483 1.0E-06 TGCCTTATTTATTTTGTA 18 V_NKX62_Q2_M00489 TRANSFAC + 56501469 56501480 4.0E-06 AAAATAAATAAG 12 V_HNF6_Q6_M00639 TRANSFAC - 56502305 56502316 8.0E-06 AAAAATCCATGT 12 V_GFI1_01_M00250 TRANSFAC + 56501184 56501207 5.0E-06 TTAAGTAAAATCACTGATTTAAAG 24 V_GFI1_01_M00250 TRANSFAC - 56501252 56501275 5.0E-06 AAAGAACCAATCAATGCTCGGGAG 24 V_TEF_Q6_M00672 TRANSFAC + 56501180 56501191 4.0E-06 ATGGTTAAGTAA 12 V_HOXB9_01_M01426 TRANSFAC - 56501508 56501523 4.0E-06 GGGGTAATAAAATAGC 16 V_CDX2_01_M01449 TRANSFAC - 56501509 56501524 2.0E-06 CGGGGTAATAAAATAG 16 V_HNF3_Q6_M00791 TRANSFAC + 56501468 56501480 7.0E-06 CAAAATAAATAAG 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 56501468 56501478 2.0E-06 TATTTATTTTG 11 V_PBX1_01_M00096 TRANSFAC - 56501262 56501270 1.0E-05 ACCAATCAA 9 V_DUXBL_01_M02968 TRANSFAC - 56501257 56501273 7.0E-06 AGAACCAATCAATGCTC 17 V_CDX1_01_M01373 TRANSFAC - 56501509 56501524 3.0E-06 CGGGGTAATAAAATAG 16 V_PBX1_05_M01967 TRANSFAC - 56501319 56501332 1.0E-06 TGTGATTGACAGCC 14 V_TFIII_Q6_M00706 TRANSFAC - 56501430 56501438 6.0E-06 AGAGGGAGG 9 V_MYF6_04_M02885 TRANSFAC - 56501314 56501328 4.0E-06 ATTGACAGCCACACC 15 V_CEBPA_01_M00116 TRANSFAC - 56501181 56501194 8.0E-06 ATTTTACTTAACCA 14 V_FOXL1_02_M02857 TRANSFAC + 56501464 56501479 4.0E-06 AGTACAAAATAAATAA 16 V_FOXL1_04_M02753 TRANSFAC + 56501467 56501483 8.0E-06 ACAAAATAAATAAGGCA 17 V_GFI1B_01_M01058 TRANSFAC + 56501190 56501201 9.0E-06 AAAATCACTGAT 12 V_GFI1B_01_M01058 TRANSFAC - 56501193 56501204 2.0E-06 TAAATCAGTGAT 12 V_FOXA2_03_M02260 TRANSFAC - 56501467 56501478 7.0E-06 TATTTATTTTGT 12 V_PLZF_02_M01075 TRANSFAC - 56501188 56501216 8.0E-06 TGGTTGGCTCTTTAAATCAGTGATTTTAC 29 V_BBX_03_M02739 TRANSFAC - 56501190 56501204 8.0E-06 TAAATCAGTGATTTT 15 V_EWSR1FLI1_01_M02252 TRANSFAC + 56502438 56502455 0.0E+00 GGGAGGGAGGAAAGAAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 56502442 56502459 3.0E-06 GGGAGGAAAGAAGGGAAG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 56502443 56502460 6.0E-06 GGAGGAAAGAAGGGAAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 56502446 56502463 5.0E-06 GGAAAGAAGGGAAGGAGG 18 V_FOXJ2_01_M00422 TRANSFAC + 56501466 56501483 2.0E-06 TACAAAATAAATAAGGCA 18 V_HNF3B_Q6_M02014 TRANSFAC - 56501471 56501479 1.0E-05 TTATTTATT 9 V_HOXD10_01_M01375 TRANSFAC - 56501507 56501523 7.0E-06 GGGGTAATAAAATAGCG 17 V_HOXC9_01_M01416 TRANSFAC - 56501509 56501524 4.0E-06 CGGGGTAATAAAATAG 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.