Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

GIGYF2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 26058 GRB10 interacting GYF protein 2 chr2 + 233557014 - 233562514 233562014 Transcription Factor Binding Sites   Download all TFBS in the GIGYF2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP8_C2H2_DBD_monomeric_12_1 SELEX - 233561984 233561995 1.0E-06 GCCACGCCCCCT 12 SP3_C2H2_DBD_monomeric_11_1 SELEX - 233561985 233561995 3.0E-06 GCCACGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 233561985 233561995 1.0E-06 GCCACGCCCCC 11 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 233561983 233561996 6.0E-06 CGCCACGCCCCCTG 14 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX + 233562010 233562019 2.0E-06 GTCACGTGAC 10 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX - 233562010 233562019 2.0E-06 GTCACGTGAC 10 EWSR1-FLI1_MA0149.1 JASPAR + 233561915 233561932 6.0E-06 GGCGGAAAGGAAGGATGT 18 USF1_bHLH_DBD_dimeric_10_1 SELEX + 233562010 233562019 3.0E-06 GTCACGTGAC 10 USF1_bHLH_DBD_dimeric_10_1 SELEX - 233562010 233562019 3.0E-06 GTCACGTGAC 10 BHLHE41_bHLH_full_dimeric_10_1 SELEX + 233562010 233562019 1.0E-06 GTCACGTGAC 10 BHLHE41_bHLH_full_dimeric_10_1 SELEX - 233562010 233562019 1.0E-06 GTCACGTGAC 10 SREBF2_bHLH_DBD_dimeric_10_1 SELEX + 233562010 233562019 3.0E-06 GTCACGTGAC 10 SREBF2_bHLH_DBD_dimeric_10_1 SELEX - 233562010 233562019 3.0E-06 GTCACGTGAC 10 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX + 233562010 233562019 3.0E-06 GTCACGTGAC 10 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX - 233562010 233562019 3.0E-06 GTCACGTGAC 10 NFAT5_NFAT_DBD_dimeric_14_1 SELEX + 233561649 233561662 5.0E-06 GTGGAAAAGTTCTA 14 Tcf21_bHLH_DBD_dimeric_14_1 SELEX + 233562533 233562546 3.0E-06 GTAACAGCTGCTGC 14 SP4_C2H2_full_monomeric_17_1 SELEX - 233561982 233561998 9.0E-06 TCCGCCACGCCCCCTGC 17 Srebf1_bHLH_DBD_dimeric_10_1 SELEX + 233562010 233562019 3.0E-06 GTCACGTGAC 10 Srebf1_bHLH_DBD_dimeric_10_1 SELEX - 233562010 233562019 3.0E-06 GTCACGTGAC 10 TFEB_bHLH_full_dimeric_10_1 SELEX + 233562010 233562019 3.0E-06 GTCACGTGAC 10 TFEB_bHLH_full_dimeric_10_1 SELEX - 233562010 233562019 3.0E-06 GTCACGTGAC 10 SP1_C2H2_DBD_monomeric_11_1 SELEX - 233561985 233561995 5.0E-06 GCCACGCCCCC 11 Pou5f1_MA0142.1 JASPAR + 233561697 233561711 8.0E-06 TTTTGAACTGCAAAA 15 TFE3_bHLH_DBD_dimeric_10_1 SELEX + 233562010 233562019 4.0E-06 GTCACGTGAC 10 TFE3_bHLH_DBD_dimeric_10_1 SELEX - 233562010 233562019 4.0E-06 GTCACGTGAC 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX + 233562010 233562019 8.0E-06 GTCACGTGAC 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX - 233562010 233562019 8.0E-06 GTCACGTGAC 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX + 233563455 233563464 8.0E-06 GTCACATGAT 10 MLX_bHLH_full_dimeric_10_1 SELEX + 233562010 233562019 5.0E-06 GTCACGTGAC 10 MLX_bHLH_full_dimeric_10_1 SELEX - 233562010 233562019 5.0E-06 GTCACGTGAC 10 Sox2_MA0143.1 JASPAR + 233561696 233561710 3.0E-06 CTTTTGAACTGCAAA 15 ARNTL_bHLH_DBD_dimeric_10_1 SELEX + 233562010 233562019 1.0E-06 GTCACGTGAC 10 ARNTL_bHLH_DBD_dimeric_10_1 SELEX - 233562010 233562019 1.0E-06 GTCACGTGAC 10 BHLHB3_bHLH_full_dimeric_10_1 SELEX + 233562010 233562019 2.0E-06 GTCACGTGAC 10 BHLHB3_bHLH_full_dimeric_10_1 SELEX - 233562010 233562019 2.0E-06 GTCACGTGAC 10 V_USF_Q6_M00187 TRANSFAC + 233562010 233562019 4.0E-06 GTCACGTGAC 10 V_USF_Q6_M00187 TRANSFAC - 233562010 233562019 4.0E-06 GTCACGTGAC 10 V_AREB6_03_M00414 TRANSFAC + 233562579 233562590 9.0E-06 CCACACCTGGTC 12 V_YY1_02_M00069 TRANSFAC + 233562033 233562052 0.0E+00 TGTCGGCCATCTTGTGTTGT 20 V_CEBP_Q3_M00770 TRANSFAC + 233561661 233561672 2.0E-06 TAATTTGGAAAA 12 V_ARNT_02_M00539 TRANSFAC + 233562005 233562024 2.0E-06 GCGCGGTCACGTGACGTGCG 20 V_ARNT_02_M00539 TRANSFAC - 233562005 233562024 2.0E-06 CGCACGTCACGTGACCGCGC 20 V_POU5F1_02_M02245 TRANSFAC + 233561697 233561711 8.0E-06 TTTTGAACTGCAAAA 15 V_NFMUE1_Q6_M00651 TRANSFAC + 233562036 233562044 6.0E-06 CGGCCATCT 9 V_RP58_01_M00532 TRANSFAC + 233562620 233562631 9.0E-06 AGAGCATCTGGA 12 V_YY1_Q6_M00793 TRANSFAC + 233562038 233562046 7.0E-06 GCCATCTTG 9 V_SPZ1_01_M00446 TRANSFAC + 233562420 233562434 6.0E-06 GCAGGAGGGTTGTGG 15 V_TR4_Q2_M01725 TRANSFAC - 233562285 233562295 8.0E-06 CCTGACCTGTC 11 V_SP1_02_M01303 TRANSFAC + 233561968 233561978 8.0E-06 GGGGCGGGGGC 11 V_PAX7_01_M01339 TRANSFAC + 233561656 233561672 8.0E-06 AGTTCTAATTTGGAAAA 17 V_WT1_Q6_01_M02036 TRANSFAC - 233561970 233561979 4.0E-06 CGCCCCCGCC 10 V_GC_01_M00255 TRANSFAC - 233561844 233561857 3.0E-06 AGAGGGCGGGGCCG 14 V_GC_01_M00255 TRANSFAC + 233561966 233561979 9.0E-06 AAGGGGCGGGGGCG 14 V_HELIOSA_02_M01004 TRANSFAC + 233561663 233561673 5.0E-06 ATTTGGAAAAC 11 V_SREBP1_01_M00220 TRANSFAC + 233562009 233562019 5.0E-06 GGTCACGTGAC 11 V_SREBP1_01_M00220 TRANSFAC - 233562010 233562020 5.0E-06 CGTCACGTGAC 11 V_SREBP1_01_M00220 TRANSFAC - 233563455 233563465 1.0E-05 CATCATGTGAC 11 V_NFAT_Q6_M00302 TRANSFAC + 233563443 233563454 3.0E-06 AACTGGAAAAAT 12 V_SP4_03_M02810 TRANSFAC - 233561980 233561996 5.0E-06 CGCCACGCCCCCTGCTC 17 V_KROX_Q6_M00982 TRANSFAC - 233561968 233561981 0.0E+00 TCCGCCCCCGCCCC 14 V_SP1_Q6_M00196 TRANSFAC - 233561845 233561857 4.0E-06 AGAGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC + 233561966 233561978 6.0E-06 AAGGGGCGGGGGC 13 V_MAZ_Q6_01_M02023 TRANSFAC + 233561950 233561963 8.0E-06 TGGGGAGGGAAGCG 14 V_EGR1_Q6_M01873 TRANSFAC + 233561971 233561980 4.0E-06 GCGGGGGCGG 10 V_ASCL2_03_M02737 TRANSFAC - 233562531 233562547 3.0E-06 CGCAGCAGCTGTTACCG 17 V_ASCL2_03_M02737 TRANSFAC + 233562532 233562548 3.0E-06 GGTAACAGCTGCTGCGG 17 V_USF_01_M00121 TRANSFAC + 233562008 233562021 8.0E-06 CGGTCACGTGACGT 14 V_USF_01_M00121 TRANSFAC - 233562008 233562021 8.0E-06 ACGTCACGTGACCG 14 V_KLF7_03_M02773 TRANSFAC + 233561843 233561858 5.0E-06 ACGGCCCCGCCCTCTT 16 V_AP1_Q2_01_M00924 TRANSFAC - 233561729 233561740 4.0E-06 TGACTCACTGTC 12 V_YY1_03_M02044 TRANSFAC + 233562035 233562046 5.0E-06 TCGGCCATCTTG 12 V_STRA13_01_M00985 TRANSFAC + 233562008 233562021 5.0E-06 CGGTCACGTGACGT 14 V_STRA13_01_M00985 TRANSFAC - 233562008 233562021 2.0E-06 ACGTCACGTGACCG 14 V_TFEB_01_M01768 TRANSFAC + 233562010 233562019 3.0E-06 GTCACGTGAC 10 V_TFEB_01_M01768 TRANSFAC - 233562010 233562019 3.0E-06 GTCACGTGAC 10 V_TFEB_01_M01768 TRANSFAC + 233563455 233563464 7.0E-06 GTCACATGAT 10 V_TFEB_01_M01768 TRANSFAC - 233563455 233563464 7.0E-06 ATCATGTGAC 10 V_NKX3A_02_M01383 TRANSFAC + 233563418 233563434 6.0E-06 AGAAAAGTATTTAAAAG 17 V_ZFP206_01_M01742 TRANSFAC - 233561827 233561837 5.0E-06 TGCGCAGGCTC 11 V_SOX2_01_M02246 TRANSFAC + 233561696 233561710 3.0E-06 CTTTTGAACTGCAAA 15 V_EWSR1FLI1_01_M02252 TRANSFAC + 233561915 233561932 6.0E-06 GGCGGAAAGGAAGGATGT 18 V_SP1_Q2_01_M00933 TRANSFAC - 233561967 233561976 7.0E-06 CCCCGCCCCT 10 V_TFE_Q6_M01029 TRANSFAC - 233563456 233563463 1.0E-05 TCATGTGA 8 V_SP1_Q4_01_M00932 TRANSFAC - 233561845 233561857 1.0E-06 AGAGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC + 233561966 233561978 5.0E-06 AAGGGGCGGGGGC 13 V_BRCA_01_M01082 TRANSFAC - 233563401 233563408 1.0E-05 TTCTGTTG 8 V_PPARA_01_M00242 TRANSFAC + 233561642 233561661 2.0E-06 AAAAGCTGTGGAAAAGTTCT 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.