Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

LTN1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 26046 listerin E3 ubiquitin protein ligase 1 chr21 - 30364777 - 30370277 30365277 Transcription Factor Binding Sites   Download all TFBS in the LTN1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX - 30360686 30360696 3.0E-06 CATGACTCACC 11 En1_MA0027.1 JASPAR - 30365179 30365189 5.0E-06 AAGTTGTGTCC 11 ELF4_ETS_full_monomeric_12_1 SELEX - 30365185 30365196 4.0E-06 AAGCCGGAAGTT 12 EWSR1-FLI1_MA0149.1 JASPAR - 30365263 30365280 6.0E-06 GGAAGTGGGGCAGCAAAT 18 Creb5_bZIP_DBD_dimeric_12_1 SELEX - 30365351 30365362 4.0E-06 AATGACATCACT 12 Pax4_MA0068.1 JASPAR + 30360787 30360816 5.0E-06 CAAAAAAAAAAAAAAAATTCCTAATACCTA 30 Pax4_MA0068.1 JASPAR + 30360788 30360817 1.0E-06 AAAAAAAAAAAAAAAATTCCTAATACCTAG 30 Pax4_MA0068.1 JASPAR + 30360789 30360818 5.0E-06 AAAAAAAAAAAAAAATTCCTAATACCTAGC 30 Pax4_MA0068.1 JASPAR + 30360790 30360819 2.0E-06 AAAAAAAAAAAAAATTCCTAATACCTAGCA 30 Pax4_MA0068.1 JASPAR + 30360791 30360820 4.0E-06 AAAAAAAAAAAAATTCCTAATACCTAGCAA 30 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX + 30365563 30365576 7.0E-06 GCAATCATCAGTAT 14 JDP2_bZIP_full_dimeric_12_1 SELEX - 30365351 30365362 9.0E-06 AATGACATCACT 12 ELF3_ETS_full_monomeric_13_1 SELEX - 30365184 30365196 2.0E-06 AAGCCGGAAGTTG 13 ZIC3_C2H2_full_monomeric_15_1 SELEX + 30365286 30365300 6.0E-06 CGCCTCCCGCTGTGT 15 ATF4_bZIP_DBD_dimeric_13_1 SELEX + 30365556 30365568 1.0E-06 ACATGATGCAATC 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX + 30365555 30365568 0.0E+00 AACATGATGCAATC 14 Foxd3_MA0041.1 JASPAR - 30360795 30360806 7.0E-06 GAATTTTTTTTT 12 EHF_ETS_full_monomeric_12_1 SELEX - 30365185 30365196 2.0E-06 AAGCCGGAAGTT 12 JDP2_bZIP_full_dimeric_9_1 SELEX - 30360687 30360695 7.0E-06 ATGACTCAC 9 DUXA_homeodomain_DBD_dimeric_13_1 SELEX + 30365558 30365570 7.0E-06 ATGATGCAATCAT 13 ELF5_ETS_full_monomeric_11_1 SELEX - 30365185 30365195 8.0E-06 AGCCGGAAGTT 11 NR3C1_MA0113.1 JASPAR + 30360793 30360810 6.0E-06 AAAAAAAAAAATTCCTAA 18 ELF3_ETS_DBD_monomeric_12_1 SELEX - 30365185 30365196 4.0E-06 AAGCCGGAAGTT 12 ETV6_ETS_full_monomeric_10_1 SELEX - 30365274 30365283 1.0E-06 AGCGGAAGTG 10 ETV6_ETS_full_dimeric_15_1 SELEX - 30365274 30365288 2.0E-06 GCGGGAGCGGAAGTG 15 E2F1_E2F_DBD_dimeric_12_1 SELEX + 30365393 30365404 4.0E-06 CGTGGCGCCAAA 12 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 30360788 30360800 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 30360789 30360801 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 30360790 30360802 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 30360791 30360803 6.0E-06 AAAAAAAAAAAAA 13 RREB1_MA0073.1 JASPAR + 30364768 30364787 9.0E-06 CCCCAACCAACCCGCTACCT 20 ZIC1_C2H2_full_monomeric_14_1 SELEX + 30365286 30365299 1.0E-05 CGCCTCCCGCTGTG 14 V_NFAT_Q4_01_M00935 TRANSFAC + 30360829 30360838 1.0E-06 TTGGAAAATT 10 V_FOXP1_01_M00987 TRANSFAC - 30360791 30360810 6.0E-06 TTAGGAATTTTTTTTTTTTT 20 V_FOXP1_01_M00987 TRANSFAC - 30360794 30360813 7.0E-06 GTATTAGGAATTTTTTTTTT 20 RXR_RAR_DR5_MA0159.1 JASPAR - 30364796 30364812 4.0E-06 GGTTCACTGGAAGGTGA 17 V_SPI1_01_M01203 TRANSFAC - 30365182 30365198 4.0E-06 AGAAGCCGGAAGTTGTG 17 V_E2F4_04_M02847 TRANSFAC - 30365390 30365406 5.0E-06 GATTTGGCGCCACGGGT 17 V_ATF_01_M00017 TRANSFAC - 30365318 30365331 2.0E-06 CTGTGACGTCTCCG 14 V_BACH2_01_M00490 TRANSFAC + 30360686 30360696 3.0E-06 GGTGAGTCATG 11 V_GATA2_02_M00348 TRANSFAC + 30364913 30364922 2.0E-06 AGAGATAACA 10 V_HMGIY_Q3_M01010 TRANSFAC - 30360790 30360804 1.0E-05 ATTTTTTTTTTTTTT 15 V_HMGIY_Q3_M01010 TRANSFAC - 30360791 30360805 5.0E-06 AATTTTTTTTTTTTT 15 V_HMGIY_Q3_M01010 TRANSFAC - 30360795 30360809 5.0E-06 TAGGAATTTTTTTTT 15 V_HMGIY_Q3_M01010 TRANSFAC - 30360796 30360810 2.0E-06 TTAGGAATTTTTTTT 15 V_EVI1_04_M00081 TRANSFAC + 30360788 30360802 6.0E-06 AAAAAAAAAAAAAAA 15 V_EVI1_04_M00081 TRANSFAC + 30360789 30360803 6.0E-06 AAAAAAAAAAAAAAA 15 V_FOXD3_01_M00130 TRANSFAC - 30360794 30360805 9.0E-06 AATTTTTTTTTT 12 V_FOXD3_01_M00130 TRANSFAC - 30360795 30360806 9.0E-06 GAATTTTTTTTT 12 V_BCL6_01_M01183 TRANSFAC - 30360788 30360803 0.0E+00 TTTTTTTTTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC - 30360789 30360804 6.0E-06 ATTTTTTTTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC - 30360790 30360805 9.0E-06 AATTTTTTTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC - 30360797 30360812 1.0E-06 TATTAGGAATTTTTTT 16 V_GABP_B_M00341 TRANSFAC - 30365272 30365283 9.0E-06 AGCGGAAGTGGG 12 V_CEBP_01_M00159 TRANSFAC + 30360826 30360838 0.0E+00 TGTTTGGAAAATT 13 V_PITX2_Q6_M02114 TRANSFAC + 30360664 30360673 1.0E-06 TGTAATCCCA 10 V_NR3C1_01_M02219 TRANSFAC + 30360793 30360810 6.0E-06 AAAAAAAAAAATTCCTAA 18 V_TCFAP2E_04_M02926 TRANSFAC + 30360783 30360796 2.0E-06 GTCTCAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 30360785 30360798 2.0E-06 CTCAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 30360786 30360799 3.0E-06 TCAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 30360787 30360800 2.0E-06 CAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 30360788 30360801 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 30360789 30360802 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 30360790 30360803 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 30360791 30360804 3.0E-06 AAAAAAAAAAAAAT 14 V_TCFAP2E_04_M02926 TRANSFAC + 30360792 30360805 4.0E-06 AAAAAAAAAAAATT 14 V_RPC155_01_M01798 TRANSFAC + 30360576 30360591 4.0E-06 CCTGAAGTTCGAAACC 16 V_SPIC_01_M02042 TRANSFAC - 30365274 30365283 9.0E-06 AGCGGAAGTG 10 V_ELF4_04_M02850 TRANSFAC + 30360783 30360799 1.0E-06 GTCTCAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 30360784 30360800 0.0E+00 TCTCAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 30360785 30360801 3.0E-06 CTCAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 30360786 30360802 2.0E-06 TCAAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 30360788 30360804 5.0E-06 AAAAAAAAAAAAAAAAT 17 V_ELF4_04_M02850 TRANSFAC + 30360789 30360805 4.0E-06 AAAAAAAAAAAAAAATT 17 V_ELF4_04_M02850 TRANSFAC + 30360790 30360806 1.0E-06 AAAAAAAAAAAAAATTC 17 V_BACH1_01_M00495 TRANSFAC + 30360684 30360698 1.0E-06 AGGGTGAGTCATGAG 15 V_OCT1_02_M00136 TRANSFAC - 30364830 30364844 2.0E-06 CATAATATTCATGAA 15 V_ZFP105_03_M02827 TRANSFAC + 30360785 30360799 1.0E-06 CTCAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 30360786 30360800 2.0E-06 TCAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 30360787 30360801 1.0E-06 CAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 30360788 30360802 0.0E+00 AAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 30360789 30360803 0.0E+00 AAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 30360790 30360804 0.0E+00 AAAAAAAAAAAAAAT 15 V_ZFP105_03_M02827 TRANSFAC + 30360791 30360805 1.0E-06 AAAAAAAAAAAAATT 15 V_ZFP105_03_M02827 TRANSFAC + 30360792 30360806 3.0E-06 AAAAAAAAAAAATTC 15 V_SOX8_04_M02912 TRANSFAC - 30364827 30364840 7.0E-06 ATATTCATGAAGAA 14 V_IK1_01_M00086 TRANSFAC - 30365648 30365660 0.0E+00 ACTTGGGAATACT 13 V_IK2_01_M00087 TRANSFAC - 30365649 30365660 6.0E-06 ACTTGGGAATAC 12 V_ATF3_Q6_M00513 TRANSFAC - 30365318 30365331 1.0E-06 CTGTGACGTCTCCG 14 V_IK3_01_M00088 TRANSFAC - 30365648 30365660 2.0E-06 ACTTGGGAATACT 13 V_SOX17_04_M02904 TRANSFAC - 30364828 30364844 7.0E-06 CATAATATTCATGAAGA 17 V_AP1_Q4_01_M00926 TRANSFAC + 30360688 30360695 1.0E-05 TGAGTCAT 8 V_MTF1_06_M02882 TRANSFAC + 30360787 30360800 8.0E-06 CAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 30360788 30360801 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 30360789 30360802 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 30360790 30360803 1.0E-06 AAAAAAAAAAAAAA 14 V_GABPBETA_Q3_M01876 TRANSFAC - 30365273 30365283 7.0E-06 AGCGGAAGTGG 11 V_EHF_06_M02745 TRANSFAC - 30365184 30365198 1.0E-06 AGAAGCCGGAAGTTG 15 V_FAC1_01_M00456 TRANSFAC + 30360788 30360801 3.0E-06 AAAAAAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC + 30360789 30360802 3.0E-06 AAAAAAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC + 30360790 30360803 3.0E-06 AAAAAAAAAAAAAA 14 V_SP4_04_M02914 TRANSFAC - 30365334 30365348 8.0E-06 GACAGGCGTGGCTTT 15 V_CAAT_C_M00200 TRANSFAC + 30365399 30365423 6.0E-06 GCCAAATCCTGTCCTCCCCGCTTTC 25 V_GATA3_02_M00350 TRANSFAC + 30364913 30364922 2.0E-06 AGAGATAACA 10 V_CPHX_01_M01478 TRANSFAC - 30365557 30365570 4.0E-06 ATGATTGCATCATG 14 V_CPHX_01_M01478 TRANSFAC + 30365558 30365571 1.0E-06 ATGATGCAATCATC 14 V_FRA1_Q5_M01267 TRANSFAC + 30360688 30360695 1.0E-05 TGAGTCAT 8 V_NRF2_Q4_M00821 TRANSFAC - 30365465 30365477 7.0E-06 CTGATGATTCACG 13 V_PITX2_Q2_M00482 TRANSFAC + 30360664 30360674 2.0E-06 TGTAATCCCAC 11 V_PLZF_02_M01075 TRANSFAC + 30365654 30365682 3.0E-06 CCCAAGTCTTGTTAAAATTTGATTACTGC 29 V_RXR_RAR_01_M02272 TRANSFAC - 30364796 30364812 4.0E-06 GGTTCACTGGAAGGTGA 17 V_GATA2_03_M00349 TRANSFAC + 30364913 30364922 2.0E-06 AGAGATAACA 10 V_SRF_06_M02916 TRANSFAC + 30360783 30360799 2.0E-06 GTCTCAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 30360784 30360800 0.0E+00 TCTCAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 30360785 30360801 0.0E+00 CTCAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 30360786 30360802 0.0E+00 TCAAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 30360787 30360803 0.0E+00 CAAAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 30360788 30360804 0.0E+00 AAAAAAAAAAAAAAAAT 17 V_SRF_06_M02916 TRANSFAC + 30360789 30360805 0.0E+00 AAAAAAAAAAAAAAATT 17 V_SRF_06_M02916 TRANSFAC + 30360790 30360806 0.0E+00 AAAAAAAAAAAAAATTC 17 V_SRF_06_M02916 TRANSFAC + 30360791 30360807 3.0E-06 AAAAAAAAAAAAATTCC 17 V_EWSR1FLI1_01_M02252 TRANSFAC - 30365263 30365280 6.0E-06 GGAAGTGGGGCAGCAAAT 18 V_TCF3_05_M02920 TRANSFAC + 30360784 30360798 4.0E-06 TCTCAAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC + 30360790 30360804 9.0E-06 AAAAAAAAAAAAAAT 15 V_TCF3_05_M02920 TRANSFAC + 30360791 30360805 9.0E-06 AAAAAAAAAAAAATT 15 V_PAX4_04_M00380 TRANSFAC + 30360788 30360817 9.0E-06 AAAAAAAAAAAAAAAATTCCTAATACCTAG 30 V_PAX4_04_M00380 TRANSFAC + 30360789 30360818 1.0E-06 AAAAAAAAAAAAAAATTCCTAATACCTAGC 30 V_NANOG_02_M01247 TRANSFAC + 30360786 30360805 3.0E-06 TCAAAAAAAAAAAAAAAATT 20 V_GATA1_06_M00347 TRANSFAC + 30364913 30364922 8.0E-06 AGAGATAACA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.