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PCDHGA12 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 26025 protocadherin gamma subfamily A, 12 chr5 + 140805157 - 140810657 140810157 Transcription Factor Binding Sites   Download all TFBS in the PCDHGA12 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 140810017 140810035 3.0E-06 AGAACAGTAGGTGGAGCTA 19 Foxa2_MA0047.2 JASPAR - 140813774 140813785 2.0E-06 TGTTTACACTGA 12 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 140810621 140810638 2.0E-06 GCCATCAAGTGTCAATTA 18 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 140813750 140813767 8.0E-06 GTAATTCCAATGTACTTA 18 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 140810622 140810638 8.0E-06 CCATCAAGTGTCAATTA 17 FOXA1_MA0148.1 JASPAR - 140813775 140813785 1.0E-06 TGTTTACACTG 11 NHLH1_MA0048.1 JASPAR + 140811101 140811112 1.0E-06 ACGCAGCTGCTT 12 NHLH1_MA0048.1 JASPAR - 140811101 140811112 2.0E-06 AAGCAGCTGCGT 12 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 140813776 140813787 2.0E-06 AGTGTAAACAAA 12 ELF4_ETS_full_monomeric_12_1 SELEX + 140811146 140811157 7.0E-06 AATGCGGAAGTG 12 FOXO3_MA0157.1 JASPAR + 140813778 140813785 7.0E-06 TGTAAACA 8 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 140813776 140813786 9.0E-06 AGTGTAAACAA 11 TBP_MA0108.2 JASPAR + 140810042 140810056 7.0E-06 ATATAAAAACGAAAT 15 FOXO1_forkhead_DBD_monomeric_8_1 SELEX + 140813779 140813786 7.0E-06 GTAAACAA 8 GATA5_GATA_DBD_monomeric_8_1 SELEX + 140810319 140810326 7.0E-06 AGATAAGA 8 GATA4_GATA_DBD_monomeric_8_1 SELEX + 140810319 140810326 7.0E-06 AGATAAGA 8 Pax4_MA0068.1 JASPAR + 140809950 140809979 9.0E-06 GAAAAAAAAAAAAAGCTCACTAAAGTTTCT 30 SPIB_ETS_DBD_monomeric_14_1 SELEX + 140811144 140811157 4.0E-06 TCAATGCGGAAGTG 14 FIGLA_bHLH_DBD_dimeric_10_1 SELEX + 140810949 140810958 7.0E-06 ACCACCTGGT 10 NFAT5_NFAT_DBD_dimeric_14_1 SELEX - 140809993 140810006 1.0E-06 ATGGAAATCTACCG 14 BCL6B_C2H2_DBD_monomeric_17_1 SELEX + 140810058 140810074 5.0E-06 TCCTTTCTGGGAGTTCA 17 SOX9_HMG_full_dimeric_16_3 SELEX + 140810074 140810089 7.0E-06 AAGATTGTGCAGTAAT 16 CTCF_C2H2_full_monomeric_17_1 SELEX - 140810018 140810034 3.0E-06 AGCTCCACCTACTGTTC 17 Gata1_MA0035.2 JASPAR + 140810317 140810327 2.0E-06 GAAGATAAGAA 11 GATA3_GATA_full_monomeric_8_1 SELEX + 140810319 140810326 7.0E-06 AGATAAGA 8 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 140810621 140810638 2.0E-06 GCCATCAAGTGTCAATTA 18 HESX1_homeodomain_DBD_dimeric_15_1 SELEX + 140810625 140810639 9.0E-06 TCAAGTGTCAATTAA 15 HESX1_homeodomain_DBD_dimeric_15_1 SELEX - 140810625 140810639 4.0E-06 TTAATTGACACTTGA 15 ELF1_ETS_full_monomeric_12_1 SELEX + 140811146 140811157 3.0E-06 AATGCGGAAGTG 12 FOXC1_MA0032.1 JASPAR - 140813762 140813769 7.0E-06 AGTAAGTA 8 SPI1_ETS_full_monomeric_14_1 SELEX + 140811144 140811157 7.0E-06 TCAATGCGGAAGTG 14 FOXB1_forkhead_full_monomeric_9_1 SELEX + 140813778 140813786 2.0E-06 TGTAAACAA 9 FOXO3_forkhead_full_monomeric_8_1 SELEX + 140813779 140813786 7.0E-06 GTAAACAA 8 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 140810621 140810638 3.0E-06 GCCATCAAGTGTCAATTA 18 Nobox_MA0125.1 JASPAR + 140810086 140810093 7.0E-06 TAATTGGT 8 NHLH1_bHLH_full_dimeric_10_1 SELEX + 140811102 140811111 4.0E-06 CGCAGCTGCT 10 NHLH1_bHLH_full_dimeric_10_1 SELEX - 140811102 140811111 5.0E-06 AGCAGCTGCG 10 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 140809950 140809962 5.0E-06 GAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 140809951 140809963 6.0E-06 AAAAAAAAAAAAA 13 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 140813776 140813786 1.0E-05 AGTGTAAACAA 11 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 140809950 140809963 8.0E-06 GAAAAAAAAAAAAA 14 V_FOXP1_01_M00987 TRANSFAC - 140809953 140809972 6.0E-06 TTAGTGAGCTTTTTTTTTTT 20 V_SPI1_01_M01203 TRANSFAC + 140811144 140811160 3.0E-06 TCAATGCGGAAGTGAGG 17 V_GATA1_Q6_M02004 TRANSFAC + 140810314 140810328 2.0E-06 GAGGAAGATAAGAAT 15 V_FOXO3_02_M02270 TRANSFAC + 140813778 140813785 7.0E-06 TGTAAACA 8 V_XFD1_01_M00267 TRANSFAC + 140813776 140813789 3.0E-06 AGTGTAAACAAAGT 14 V_GATA2_02_M00348 TRANSFAC + 140810317 140810326 7.0E-06 GAAGATAAGA 10 V_FOXA2_04_M02749 TRANSFAC + 140813774 140813790 1.0E-06 TCAGTGTAAACAAAGTA 17 V_NFY_Q6_M00185 TRANSFAC - 140810085 140810095 9.0E-06 TAACCAATTAC 11 V_EVI1_04_M00081 TRANSFAC + 140809949 140809963 4.0E-06 GGAAAAAAAAAAAAA 15 V_EVI1_04_M00081 TRANSFAC + 140810319 140810333 1.0E-05 AGATAAGAATGATTC 15 V_FOXO4_02_M00476 TRANSFAC - 140813776 140813789 2.0E-06 ACTTTGTTTACACT 14 V_MEF2_02_M00231 TRANSFAC - 140810028 140810049 6.0E-06 TTTTATATCTTAAATAGCTCCA 22 V_IRF2_Q6_M01882 TRANSFAC + 140810293 140810308 7.0E-06 GCAGAATTGAAAATAA 16 V_NFAT3_Q3_M01734 TRANSFAC + 140813850 140813859 6.0E-06 TGTTTTTCCT 10 V_GTF2IRD1_01_M01229 TRANSFAC + 140813731 140813739 9.0E-06 GGGATTATA 9 V_FOXO3A_Q1_M01137 TRANSFAC + 140813778 140813789 2.0E-06 TGTAAACAAAGT 12 V_SOX11_04_M02899 TRANSFAC - 140810299 140810312 6.0E-06 AGAATTATTTTCAA 14 V_HOXC4_01_M01369 TRANSFAC - 140810627 140810643 6.0E-06 AGATTTAATTGACACTT 17 V_FOXJ1_03_M02750 TRANSFAC + 140813776 140813791 1.0E-06 AGTGTAAACAAAGTAC 16 V_PITX2_Q6_M02114 TRANSFAC - 140813730 140813739 3.0E-06 TATAATCCCA 10 V_PITX2_Q6_M02114 TRANSFAC + 140813749 140813758 9.0E-06 TGTAATTCCA 10 V_TCFAP2E_04_M02926 TRANSFAC + 140809927 140809940 4.0E-06 TTGGGGAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 140809945 140809958 7.0E-06 ATTGGGAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 140809946 140809959 6.0E-06 TTGGGAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 140809947 140809960 9.0E-06 TGGGAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 140809950 140809963 3.0E-06 GAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 140809951 140809964 4.0E-06 AAAAAAAAAAAAAG 14 V_DLX5_01_M01388 TRANSFAC + 140810082 140810097 4.0E-06 GCAGTAATTGGTTAGG 16 V_PAX7_01_M01339 TRANSFAC - 140810627 140810643 2.0E-06 AGATTTAATTGACACTT 17 V_VSX1_01_M01335 TRANSFAC - 140810627 140810643 4.0E-06 AGATTTAATTGACACTT 17 V_TAL1_GATA1_01_M02243 TRANSFAC + 140810308 140810325 4.0E-06 ATTCTGGAGGAAGATAAG 18 V_ELF4_04_M02850 TRANSFAC + 140809949 140809965 1.0E-06 GGAAAAAAAAAAAAAGC 17 V_EN1_02_M01365 TRANSFAC - 140810082 140810097 8.0E-06 CCTAACCAATTACTGC 16 V_ZFP105_03_M02827 TRANSFAC + 140809949 140809963 4.0E-06 GGAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 140809950 140809964 2.0E-06 GAAAAAAAAAAAAAG 15 V_ZFP105_03_M02827 TRANSFAC + 140809951 140809965 9.0E-06 AAAAAAAAAAAAAGC 15 V_ZFP105_03_M02827 TRANSFAC + 140809952 140809966 2.0E-06 AAAAAAAAAAAAGCT 15 V_FOXO1_02_M00474 TRANSFAC - 140813776 140813789 3.0E-06 ACTTTGTTTACACT 14 V_NFAT_Q6_M00302 TRANSFAC - 140813851 140813862 6.0E-06 TACAGGAAAAAC 12 V_TATA_01_M00252 TRANSFAC + 140810042 140810056 7.0E-06 ATATAAAAACGAAAT 15 V_XFD3_01_M00269 TRANSFAC + 140813776 140813789 7.0E-06 AGTGTAAACAAAGT 14 V_HNF3A_01_M01261 TRANSFAC + 140813777 140813786 5.0E-06 GTGTAAACAA 10 V_SOX18_03_M02801 TRANSFAC - 140810298 140810313 5.0E-06 CAGAATTATTTTCAAT 16 V_HOX13_01_M00023 TRANSFAC - 140810073 140810102 7.0E-06 AGAGTCCTAACCAATTACTGCACAATCTTG 30 V_IK2_01_M00087 TRANSFAC + 140809944 140809955 3.0E-06 CATTGGGAAAAA 12 Tal1_Gata1_MA0140.1 JASPAR + 140810308 140810325 4.0E-06 ATTCTGGAGGAAGATAAG 18 V_ZIC3_05_M02941 TRANSFAC - 140810365 140810379 5.0E-06 ATTCCCAGCAGGACA 15 V_GATA1_09_M02254 TRANSFAC + 140810317 140810327 2.0E-06 GAAGATAAGAA 11 V_XFD2_01_M00268 TRANSFAC + 140813776 140813789 5.0E-06 AGTGTAAACAAAGT 14 V_ISGF3G_03_M02771 TRANSFAC + 140810294 140810308 3.0E-06 CAGAATTGAAAATAA 15 V_LIM1_01_M01418 TRANSFAC - 140810627 140810643 4.0E-06 AGATTTAATTGACACTT 17 V_FOXO1_Q5_M01216 TRANSFAC - 140813848 140813856 1.0E-05 AAAAACAGA 9 V_FREAC2_01_M00290 TRANSFAC + 140813774 140813789 2.0E-06 TCAGTGTAAACAAAGT 16 V_ZIC2_05_M02940 TRANSFAC - 140810365 140810379 3.0E-06 ATTCCCAGCAGGACA 15 V_MTF1_06_M02882 TRANSFAC + 140809951 140809964 1.0E-06 AAAAAAAAAAAAAG 14 V_MTF1_06_M02882 TRANSFAC + 140809952 140809965 5.0E-06 AAAAAAAAAAAAGC 14 V_MTF1_06_M02882 TRANSFAC + 140810035 140810048 6.0E-06 ATTTAAGATATAAA 14 V_FAC1_01_M00456 TRANSFAC + 140809950 140809963 9.0E-06 GAAAAAAAAAAAAA 14 V_TAL1_01_M01591 TRANSFAC - 140810317 140810329 4.0E-06 CATTCTTATCTTC 13 V_SIRT6_01_M01797 TRANSFAC + 140810319 140810326 7.0E-06 AGATAAGA 8 V_FOXL1_04_M02753 TRANSFAC + 140813774 140813790 2.0E-06 TCAGTGTAAACAAAGTA 17 V_NCX_01_M00484 TRANSFAC + 140810083 140810092 1.0E-05 CAGTAATTGG 10 V_TCF7_04_M02921 TRANSFAC - 140809972 140809986 2.0E-06 CTTTAATAGAAACTT 15 V_FOXO3_01_M00477 TRANSFAC - 140813776 140813789 3.0E-06 ACTTTGTTTACACT 14 V_MSX1_01_M00394 TRANSFAC + 140810083 140810091 7.0E-06 CAGTAATTG 9 V_FOXA2_03_M02260 TRANSFAC - 140813774 140813785 2.0E-06 TGTTTACACTGA 12 V_PITX2_Q2_M00482 TRANSFAC - 140813729 140813739 0.0E+00 TATAATCCCAA 11 V_ZFP281_01_M01597 TRANSFAC + 140813821 140813831 1.0E-05 TGGGGGAGGTG 11 V_BBX_03_M02739 TRANSFAC + 140809908 140809922 2.0E-06 CAATTCATTTAAAAG 15 V_BBX_03_M02739 TRANSFAC - 140809908 140809922 4.0E-06 CTTTTAAATGAATTG 15 V_LEF1TCF1_Q4_M00978 TRANSFAC - 140810351 140810361 9.0E-06 CCTTTGTAGTC 11 V_ZFP281_04_M02831 TRANSFAC - 140813819 140813833 6.0E-06 TCCACCTCCCCCACA 15 V_SRF_06_M02916 TRANSFAC + 140809945 140809961 3.0E-06 ATTGGGAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 140809946 140809962 2.0E-06 TTGGGAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 140809947 140809963 2.0E-06 TGGGAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 140809948 140809964 1.0E-06 GGGAAAAAAAAAAAAAG 17 V_SRF_06_M02916 TRANSFAC + 140809949 140809965 0.0E+00 GGAAAAAAAAAAAAAGC 17 V_SRF_06_M02916 TRANSFAC + 140809950 140809966 0.0E+00 GAAAAAAAAAAAAAGCT 17 V_SRF_06_M02916 TRANSFAC + 140809951 140809967 1.0E-06 AAAAAAAAAAAAAGCTC 17 V_HOMEZ_01_M01429 TRANSFAC - 140810043 140810059 4.0E-06 GATATTTCGTTTTTATA 17 V_LHX5_01_M01353 TRANSFAC - 140810627 140810643 8.0E-06 AGATTTAATTGACACTT 17 V_GATA6_04_M02757 TRANSFAC + 140810314 140810330 3.0E-06 GAGGAAGATAAGAATGA 17 V_BARX1_01_M01340 TRANSFAC - 140810080 140810095 7.0E-06 TAACCAATTACTGCAC 16 V_EHF_07_M02849 TRANSFAC + 140813748 140813763 5.0E-06 TTGTAATTCCAATGTA 16 V_TCF3_05_M02920 TRANSFAC + 140809946 140809960 0.0E+00 TTGGGAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC + 140809947 140809961 0.0E+00 TGGGAAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC + 140809948 140809962 4.0E-06 GGGAAAAAAAAAAAA 15 V_FOXK1_03_M02752 TRANSFAC + 140813774 140813790 2.0E-06 TCAGTGTAAACAAAGTA 17 V_ZIC1_05_M02939 TRANSFAC - 140810365 140810379 4.0E-06 ATTCCCAGCAGGACA 15 V_OCT4_01_M01125 TRANSFAC + 140813746 140813760 9.0E-06 ATTTGTAATTCCAAT 15

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