Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TMEM98 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 26022 transmembrane protein 98 chr17 + 31249927 - 31255427 31254927 Transcription Factor Binding Sites   Download all TFBS in the TMEM98 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Foxa2_MA0047.2 JASPAR - 31254382 31254393 1.0E-06 TGTTTACACAGG 12 ESRRA_nuclearreceptor_DBD_dimeric_19_1 SELEX - 31251140 31251158 9.0E-06 TAAGGACTCAGGAAGGGCA 19 FOXA1_MA0148.1 JASPAR - 31254383 31254393 2.0E-06 TGTTTACACAG 11 FOXF2_MA0030.1 JASPAR + 31255750 31255763 2.0E-06 TTAAGATAAACACT 14 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 31255646 31255662 1.0E-05 ATAGAGAAAGAAAAACA 17 FOXO3_MA0157.1 JASPAR + 31254386 31254393 7.0E-06 TGTAAACA 8 EWSR1-FLI1_MA0149.1 JASPAR + 31255571 31255588 4.0E-06 GGAAGGGGGAAAGTAAGG 18 GLI2_C2H2_DBD_monomeric_14_1 SELEX - 31256394 31256407 4.0E-06 GACCACCCACTTGG 14 XBP1_bZIP_DBD_dimeric_12_1 SELEX + 31251085 31251096 6.0E-06 GATGACGTAAGT 12 Creb5_bZIP_DBD_dimeric_12_1 SELEX - 31251085 31251096 8.0E-06 ACTTACGTCATC 12 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX + 31256111 31256126 6.0E-06 TCACACCCACTCAAGC 16 NFATC1_NFAT_full_dimeric_14_1 SELEX + 31254837 31254850 4.0E-06 GTTTCAATGGGACA 14 NFATC1_NFAT_full_dimeric_14_1 SELEX - 31254837 31254850 5.0E-06 TGTCCCATTGAAAC 14 Esrra_nuclearreceptor_DBD_dimeric_17_1 SELEX + 31251164 31251180 6.0E-06 TTTGTTATTCAAGGTTA 17 ESR1_MA0112.2 JASPAR + 31254428 31254447 0.0E+00 CACCCAGGGCAGCCTGCCCT 20 ESR1_MA0112.2 JASPAR - 31254433 31254452 6.0E-06 CAGGCAGGGCAGGCTGCCCT 20 SP1_MA0079.2 JASPAR - 31256425 31256434 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR + 31256617 31256626 3.0E-06 CCCCTCCCCC 10 SOX14_HMG_DBD_dimeric_15_1 SELEX - 31251070 31251084 7.0E-06 TTGAATACCAGTTGT 15 Evi1_MA0029.1 JASPAR + 31255921 31255934 4.0E-06 CACACAAGATAAAC 14 Pou5f1_MA0142.1 JASPAR + 31251163 31251177 6.0E-06 TTTTGTTATTCAAGG 15 SOX18_HMG_full_dimeric_15_3 SELEX - 31251070 31251084 9.0E-06 TTGAATACCAGTTGT 15 FOXO3_forkhead_full_dimeric_14_1 SELEX + 31258909 31258922 5.0E-06 ATGAACATGTTCAC 14 FOXO3_forkhead_full_dimeric_14_1 SELEX - 31258909 31258922 5.0E-06 GTGAACATGTTCAT 14 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX + 31256551 31256565 1.0E-06 GTGGTTAAAAGGACA 15 Sox2_MA0143.1 JASPAR + 31251162 31251176 0.0E+00 CTTTTGTTATTCAAG 15 FOXO6_forkhead_DBD_dimeric_14_1 SELEX + 31258909 31258922 9.0E-06 ATGAACATGTTCAC 14 FOXO6_forkhead_DBD_dimeric_14_1 SELEX - 31258909 31258922 7.0E-06 GTGAACATGTTCAT 14 V_MEQ_01_M02049 TRANSFAC - 31254492 31254500 7.0E-06 AACACACAC 9 V_FOXP1_01_M00987 TRANSFAC - 31255650 31255669 0.0E+00 TTCTTTGTGTTTTTCTTTCT 20 V_FOXP1_01_M00987 TRANSFAC - 31256133 31256152 1.0E-05 TTGTGTGAGCTGTTTATCTT 20 V_FOXP1_01_M00987 TRANSFAC - 31256166 31256185 4.0E-06 TTAGCTATGTTTCTGAGTGT 20 V_E2A_Q6_01_M02088 TRANSFAC - 31258794 31258806 0.0E+00 GGACACCTGCAGG 13 V_FREAC7_01_M00293 TRANSFAC + 31255750 31255765 1.0E-05 TTAAGATAAACACTCA 16 V_TCF3_01_M01594 TRANSFAC + 31251162 31251174 1.0E-06 CTTTTGTTATTCA 13 V_TCF3_01_M01594 TRANSFAC - 31255656 31255668 3.0E-06 TCTTTGTGTTTTT 13 V_TCFE2A_04_M02927 TRANSFAC - 31258935 31258951 7.0E-06 TGAGACAGATGGCTGAG 17 V_FOXO3_02_M02270 TRANSFAC + 31254386 31254393 7.0E-06 TGTAAACA 8 V_ATF5_01_M01295 TRANSFAC - 31255584 31255594 2.0E-06 TCTCTCCCTTA 11 V_ALX4_01_M00619 TRANSFAC + 31256604 31256616 7.0E-06 CCTGAGAATTACC 13 V_RHOX11_01_M01347 TRANSFAC + 31251094 31251110 3.0E-06 AGTCCGATGTTAAGCAT 17 V_ESR1_01_M02261 TRANSFAC + 31254428 31254447 0.0E+00 CACCCAGGGCAGCCTGCCCT 20 V_ESR1_01_M02261 TRANSFAC - 31254433 31254452 6.0E-06 CAGGCAGGGCAGGCTGCCCT 20 V_ZFX_01_M01593 TRANSFAC - 31255313 31255328 6.0E-06 GGCCAGGCCCCGCGCC 16 V_ATF4_Q6_M01864 TRANSFAC - 31251085 31251093 6.0E-06 TACGTCATC 9 V_AML3_Q6_M01856 TRANSFAC - 31255550 31255557 1.0E-05 AACCACAA 8 V_POU5F1_02_M02245 TRANSFAC + 31251163 31251177 6.0E-06 TTTTGTTATTCAAGG 15 V_IK_Q5_M01169 TRANSFAC - 31258846 31258855 8.0E-06 GTTGGGAGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 31254931 31254940 4.0E-06 GGGGCGGGGC 10 V_CREB_Q4_01_M00917 TRANSFAC + 31251084 31251094 1.0E-06 AGATGACGTAA 11 V_IRF_Q6_01_M00972 TRANSFAC + 31256488 31256498 3.0E-06 GAAAGAGAAAC 11 V_IRF2_Q6_M01882 TRANSFAC + 31256486 31256501 1.0E-06 TGGAAAGAGAAACAGA 16 V_NFAT3_Q3_M01734 TRANSFAC - 31255614 31255623 1.0E-05 AAGTTTTCCT 10 V_GLI1_Q2_M01042 TRANSFAC - 31256398 31256407 4.0E-06 GACCACCCAC 10 V_GLI1_01_M01702 TRANSFAC - 31256397 31256407 2.0E-06 GACCACCCACT 11 V_AP2_Q6_01_M00915 TRANSFAC - 31256413 31256425 1.0E-06 CGGTCCCCAGGCC 13 V_HNF3_Q6_01_M01012 TRANSFAC - 31255923 31255940 9.0E-06 CTGAGTGTTTATCTTGTG 18 V_SP1_03_M02281 TRANSFAC - 31256425 31256434 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC + 31256617 31256626 3.0E-06 CCCCTCCCCC 10 V_CREB_01_M00039 TRANSFAC + 31251087 31251094 1.0E-05 TGACGTAA 8 V_SPZ1_01_M00446 TRANSFAC - 31256609 31256623 1.0E-05 GGAGGGGGGTAATTC 15 V_GM497_04_M02864 TRANSFAC + 31255916 31255931 6.0E-06 AGAGGCACACAAGATA 16 V_CDX_Q5_M00991 TRANSFAC - 31251155 31251172 4.0E-06 AATAACAAAAGCTTTAAG 18 V_RHOX11_02_M01384 TRANSFAC + 31251094 31251110 3.0E-06 AGTCCGATGTTAAGCAT 17 V_BARBIE_01_M00238 TRANSFAC - 31251155 31251169 1.0E-05 AACAAAAGCTTTAAG 15 V_GLI3_02_M01704 TRANSFAC - 31256397 31256407 2.0E-06 GACCACCCACT 11 V_SOX7_03_M02807 TRANSFAC - 31251155 31251176 7.0E-06 CTTGAATAACAAAAGCTTTAAG 22 V_FOXA2_02_M02853 TRANSFAC - 31251161 31251175 2.0E-06 TTGAATAACAAAAGC 15 V_ZIC3_01_M00450 TRANSFAC + 31256399 31256407 6.0E-06 TGGGTGGTC 9 V_GFI1_01_M00250 TRANSFAC + 31258978 31259001 7.0E-06 ATAAGCCAAATCACTTTCCAGCCA 24 V_STAF_01_M00262 TRANSFAC + 31255161 31255182 5.0E-06 GCTTCCCGGCATGCTCCGCTGC 22 V_SOX8_04_M02912 TRANSFAC + 31256155 31256168 6.0E-06 ACATTCAGAAAACA 14 V_NFAT_Q6_M00302 TRANSFAC + 31255611 31255622 7.0E-06 AACAGGAAAACT 12 V_NGFIC_01_M00244 TRANSFAC - 31256113 31256124 9.0E-06 TTGAGTGGGTGT 12 V_E2F1_01_M01250 TRANSFAC - 31255665 31255672 1.0E-05 CGTTTCTT 8 V_AML2_01_M01759 TRANSFAC - 31255550 31255557 1.0E-05 AACCACAA 8 V_KROX_Q6_M00982 TRANSFAC - 31255123 31255136 4.0E-06 CGCGCCCCCGCGCC 14 V_ZBP89_Q4_M01816 TRANSFAC + 31256618 31256627 4.0E-06 CCCTCCCCCA 10 V_IRX4_01_M01410 TRANSFAC + 31258908 31258924 4.0E-06 TATGAACATGTTCACCT 17 V_HNF3A_01_M01261 TRANSFAC + 31254385 31254394 9.0E-06 GTGTAAACAG 10 V_MAZ_Q6_01_M02023 TRANSFAC - 31256613 31256626 3.0E-06 GGGGGAGGGGGGTA 14 V_AP2BETA_Q3_M01858 TRANSFAC + 31255104 31255119 5.0E-06 GCCGGGGGCCGGGGGC 16 V_IRF_Q6_M00772 TRANSFAC - 31256488 31256502 2.0E-06 CTCTGTTTCTCTTTC 15 V_HMX1_01_M00433 TRANSFAC + 31256395 31256404 5.0E-06 CAAGTGGGTG 10 V_E4F1_Q6_01_M02091 TRANSFAC + 31251086 31251095 3.0E-06 ATGACGTAAG 10 V_ISRE_01_M00258 TRANSFAC - 31256486 31256500 8.0E-06 CTGTTTCTCTTTCCA 15 V_CREBATF_Q6_M00981 TRANSFAC + 31251086 31251094 9.0E-06 ATGACGTAA 9 V_SOX12_04_M02900 TRANSFAC + 31255644 31255659 2.0E-06 GAATAGAGAAAGAAAA 16 V_SOX12_04_M02900 TRANSFAC + 31255656 31255671 0.0E+00 AAAAACACAAAGAAAC 16 V_ZIC1_01_M00448 TRANSFAC + 31256399 31256407 6.0E-06 TGGGTGGTC 9 V_E2F_Q4_02_M00939 TRANSFAC + 31255094 31255102 6.0E-06 TTTGGCGCG 9 V_CREB_Q2_01_M00916 TRANSFAC - 31251083 31251096 7.0E-06 ACTTACGTCATCTT 14 V_SOX11_03_M02795 TRANSFAC - 31251158 31251174 3.0E-06 TGAATAACAAAAGCTTT 17 V_ISGF4G_04_M02875 TRANSFAC + 31255607 31255620 4.0E-06 GAAAAACAGGAAAA 14 V_GLI3_Q5_01_M01657 TRANSFAC + 31256398 31256406 6.0E-06 GTGGGTGGT 9 V_IRX5_01_M01472 TRANSFAC + 31258908 31258924 8.0E-06 TATGAACATGTTCACCT 17 V_EVI1_06_M00011 TRANSFAC + 31255924 31255932 2.0E-06 ACAAGATAA 9 V_SOX17_04_M02904 TRANSFAC + 31256151 31256167 3.0E-06 AAGCACATTCAGAAAAC 17 V_TFIII_Q6_M00706 TRANSFAC - 31256628 31256636 1.0E-05 AGAGGTAGG 9 V_GLI3_01_M01596 TRANSFAC + 31256398 31256408 1.0E-06 GTGGGTGGTCT 11 V_SP4_Q5_M01273 TRANSFAC - 31254930 31254940 2.0E-06 GCCCCGCCCCG 11 V_FREAC2_01_M00290 TRANSFAC + 31255750 31255765 1.0E-06 TTAAGATAAACACTCA 16 V_ELF1_Q6_M00746 TRANSFAC + 31255609 31255620 2.0E-06 AAAACAGGAAAA 12 V_T3R_01_M00239 TRANSFAC + 31255760 31255775 9.0E-06 CACTCAGGTCACACAC 16 V_GLI2_01_M01703 TRANSFAC - 31256397 31256407 3.0E-06 GACCACCCACT 11 V_FAC1_01_M00456 TRANSFAC + 31255653 31255666 1.0E-06 AAGAAAAACACAAA 14 V_TAL1_01_M01591 TRANSFAC + 31258867 31258879 2.0E-06 CCTCCTTCTCTGC 13 V_E2F_Q6_01_M00920 TRANSFAC - 31255093 31255104 7.0E-06 CCCGCGCCAAAT 12 V_FOXL1_04_M02753 TRANSFAC + 31255750 31255766 7.0E-06 TTAAGATAAACACTCAG 17 V_ZSCAN4_04_M02942 TRANSFAC + 31255776 31255791 5.0E-06 ACAAGCACACTAAGAA 16 V_ZSCAN4_04_M02942 TRANSFAC + 31255916 31255931 0.0E+00 AGAGGCACACAAGATA 16 V_E2F6_01_M01252 TRANSFAC - 31255665 31255672 1.0E-05 CGTTTCTT 8 V_ATF2_Q5_M01862 TRANSFAC + 31251084 31251095 3.0E-06 AGATGACGTAAG 12 V_RHOX11_05_M03099 TRANSFAC + 31251094 31251110 3.0E-06 AGTCCGATGTTAAGCAT 17 V_NRF2_Q4_M00821 TRANSFAC + 31258856 31258868 7.0E-06 ATCCTGAGTCACC 13 V_FOXA2_03_M02260 TRANSFAC - 31254382 31254393 1.0E-06 TGTTTACACAGG 12 V_FOX_Q2_M00809 TRANSFAC - 31255752 31255764 9.0E-06 GAGTGTTTATCTT 13 V_FOX_Q2_M00809 TRANSFAC - 31255926 31255938 9.0E-06 GAGTGTTTATCTT 13 V_E47_01_M00002 TRANSFAC + 31258794 31258808 1.0E-06 CCTGCAGGTGTCCTT 15 V_E2F_Q3_01_M00918 TRANSFAC + 31255094 31255102 6.0E-06 TTTGGCGCG 9 V_ZFP281_01_M01597 TRANSFAC + 31256424 31256434 7.0E-06 CGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 31256617 31256627 1.0E-06 TGGGGGAGGGG 11 V_E2F_Q4_01_M00919 TRANSFAC - 31255093 31255103 5.0E-06 CCGCGCCAAAT 11 V_IRX2_01_M01405 TRANSFAC + 31258908 31258924 9.0E-06 TATGAACATGTTCACCT 17 V_LEF1TCF1_Q4_M00978 TRANSFAC + 31255362 31255372 1.0E-05 GCTTTGTTCTT 11 V_IRF1_Q6_01_M01881 TRANSFAC - 31256487 31256500 3.0E-06 CTGTTTCTCTTTCC 14 V_SOX2_01_M02246 TRANSFAC + 31251162 31251176 0.0E+00 CTTTTGTTATTCAAG 15 V_ZFP281_04_M02831 TRANSFAC + 31256615 31256629 1.0E-06 CCCCCCTCCCCCACC 15 V_EWSR1FLI1_01_M02252 TRANSFAC + 31255571 31255588 4.0E-06 GGAAGGGGGAAAGTAAGG 18 V_FOXJ2_01_M00422 TRANSFAC + 31255749 31255766 2.0E-06 CTTAAGATAAACACTCAG 18 V_FOXJ2_01_M00422 TRANSFAC + 31255923 31255940 2.0E-06 CACAAGATAAACACTCAG 18 V_FOXJ2_01_M00422 TRANSFAC + 31256130 31256147 3.0E-06 CTCAAGATAAACAGCTCA 18 V_E4F1_Q6_M00694 TRANSFAC - 31251086 31251095 9.0E-06 CTTACGTCAT 10 V_FOXO1_04_M01969 TRANSFAC + 31258903 31258922 3.0E-06 CTGAATATGAACATGTTCAC 20 V_SMAD3_Q6_M00701 TRANSFAC - 31256507 31256515 1.0E-05 TGTCTGCCT 9 V_SOX2_Q6_M01272 TRANSFAC + 31251158 31251173 0.0E+00 AAAGCTTTTGTTATTC 16 V_IRF1_01_M00062 TRANSFAC - 31251161 31251173 8.0E-06 GAATAACAAAAGC 13 V_GLI_Q2_M01037 TRANSFAC + 31256397 31256408 2.0E-06 AGTGGGTGGTCT 12 V_FREAC4_01_M00292 TRANSFAC + 31254382 31254397 2.0E-06 CCTGTGTAAACAGCCC 16 V_UF1H3BETA_Q6_M01068 TRANSFAC - 31256616 31256629 1.0E-06 GGTGGGGGAGGGGG 14 V_TAACC_B_M00331 TRANSFAC + 31255645 31255667 3.0E-06 AATAGAGAAAGAAAAACACAAAG 23 V_IRXB3_01_M01377 TRANSFAC - 31258907 31258923 8.0E-06 GGTGAACATGTTCATAT 17 V_IRXB3_01_M01377 TRANSFAC + 31258908 31258924 3.0E-06 TATGAACATGTTCACCT 17 V_RHOX11_06_M03100 TRANSFAC + 31251094 31251110 3.0E-06 AGTCCGATGTTAAGCAT 17 V_ZIC2_01_M00449 TRANSFAC + 31256399 31256407 6.0E-06 TGGGTGGTC 9 V_FOXK1_03_M02752 TRANSFAC + 31255750 31255766 6.0E-06 TTAAGATAAACACTCAG 17 V_FOXK1_03_M02752 TRANSFAC + 31255924 31255940 1.0E-05 ACAAGATAAACACTCAG 17 V_SMAD1_01_M01590 TRANSFAC - 31251161 31251172 1.0E-06 AATAACAAAAGC 12 V_SMAD1_01_M01590 TRANSFAC + 31255658 31255669 5.0E-06 AAACACAAAGAA 12 V_SMAD1_01_M01590 TRANSFAC + 31256530 31256541 4.0E-06 AAACACAAAGGC 12 V_NANOG_02_M01247 TRANSFAC - 31251157 31251176 2.0E-06 CTTGAATAACAAAAGCTTTA 20 V_NANOG_02_M01247 TRANSFAC + 31255646 31255665 4.0E-06 ATAGAGAAAGAAAAACACAA 20 V_NANOG_02_M01247 TRANSFAC + 31255654 31255673 6.0E-06 AGAAAAACACAAAGAAACGC 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.