Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ABP1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 26 amine oxidase, copper containing 1 chr7 + 150544564 - 150550064 150549564 Transcription Factor Binding Sites   Download all TFBS in the ABP1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 150553033 150553043 9.0E-06 CATGAGTCACT 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 150553033 150553043 6.0E-06 AGTGACTCATG 11 SOX21_HMG_DBD_dimeric_15_1 SELEX - 150548743 150548757 8.0E-06 AGCCATTTCAGTGTG 15 SOX4_HMG_DBD_dimeric_16_1 SELEX - 150548743 150548758 3.0E-06 AAGCCATTTCAGTGTG 16 MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 150552895 150552912 1.0E-06 TCAATTAAACAGTAAATA 18 HOXA10_homeodomain_DBD_monomeric_12_1 SELEX + 150549118 150549129 6.0E-06 GATCGTTAAAAA 12 IRF7_IRF_DBD_dimeric_14_1 SELEX - 150552953 150552966 3.0E-06 TTTAAAATGAAAAT 14 THRA_nuclearreceptor_FL_dimeric_18_1 SELEX + 150551629 150551646 7.0E-06 CTGACCTCAAAAGGTGGC 18 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 150552192 150552202 1.0E-06 TGCCTCAGGCA 11 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX - 150552192 150552202 3.0E-06 TGCCTGAGGCA 11 HNF1B_MA0153.1 JASPAR + 150552898 150552909 2.0E-06 TTACTGTTTAAT 12 SOX8_HMG_full_dimeric_15_1 SELEX - 150548743 150548757 4.0E-06 AGCCATTTCAGTGTG 15 HOXD11_homeodomain_DBD_monomeric_10_1 SELEX + 150549119 150549128 6.0E-06 ATCGTTAAAA 10 GCM1_GCM_full_dimeric_16_1 SELEX + 150549226 150549241 6.0E-06 CTGTGGGTGCCAGCCT 16 HOXC11_homeodomain_full_monomeric_11_1 SELEX + 150549118 150549128 4.0E-06 GATCGTTAAAA 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 150552192 150552202 1.0E-06 TGCCTCAGGCA 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX - 150552192 150552202 4.0E-06 TGCCTGAGGCA 11 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 150552889 150552902 9.0E-06 ACTTTATATTTACT 14 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX - 150548777 150548790 4.0E-06 CTCATCATCATCCT 14 RUNX3_RUNX_full_monomeric_10_1 SELEX + 150548807 150548816 2.0E-06 TAACCACAAA 10 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX + 150549119 150549128 8.0E-06 ATCGTTAAAA 10 CUX1_CUT_DBD_dimeric_18_1 SELEX - 150552896 150552913 9.0E-06 ATCAATTAAACAGTAAAT 18 RUNX2_RUNX_DBD_monomeric_9_1 SELEX + 150548807 150548815 1.0E-05 TAACCACAA 9 HMX3_homeodomain_DBD_monomeric_11_1 SELEX - 150552903 150552913 3.0E-06 ATCAATTAAAC 11 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 150552889 150552902 9.0E-06 ACTTTATATTTACT 14 ONECUT1_CUT_full_monomeric_14_1 SELEX - 150552905 150552918 5.0E-06 GAGAAATCAATTAA 14 RUNX2_RUNX_DBD_dimeric_18_1 SELEX + 150548798 150548815 4.0E-06 AAACCCCTATAACCACAA 18 PAX3_PAX_DBD_dimeric_10_1 SELEX + 150552906 150552915 3.0E-06 TAATTGATTT 10 PAX3_PAX_DBD_dimeric_10_1 SELEX - 150552906 150552915 2.0E-06 AAATCAATTA 10 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 150552896 150552910 6.0E-06 AATTAAACAGTAAAT 15 RAX_homeodomain_DBD_monomeric_10_1 SELEX - 150552904 150552913 6.0E-06 ATCAATTAAA 10 ONECUT2_CUT_DBD_monomeric_14_1 SELEX - 150552905 150552918 3.0E-06 GAGAAATCAATTAA 14 HOXC11_homeodomain_DBD_monomeric_11_1 SELEX + 150549118 150549128 5.0E-06 GATCGTTAAAA 11 MIXL1_homeodomain_full_monomeric_10_1 SELEX - 150552904 150552913 5.0E-06 ATCAATTAAA 10 NFATC1_NFAT_full_dimeric_15_1 SELEX + 150548441 150548455 1.0E-06 TTTCCTTTGTGGAAT 15 NFATC1_NFAT_full_dimeric_15_1 SELEX - 150548441 150548455 1.0E-06 ATTCCACAAAGGAAA 15 GSX2_homeodomain_DBD_monomeric_10_1 SELEX - 150552904 150552913 5.0E-06 ATCAATTAAA 10 Msx3_homeodomain_DBD_dimeric_18_1 SELEX - 150552895 150552912 3.0E-06 TCAATTAAACAGTAAATA 18 Hoxa11_homeodomain_DBD_monomeric_12_1 SELEX + 150549118 150549129 6.0E-06 GATCGTTAAAAA 12 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 150548372 150548386 9.0E-06 TTAAAGGGAAAGGGG 15 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 150552192 150552202 1.0E-06 TGCCTCAGGCA 11 TFAP2C_TFAP_full_dimeric_11_1 SELEX - 150552192 150552202 3.0E-06 TGCCTGAGGCA 11 JDP2_bZIP_full_dimeric_9_1 SELEX + 150553034 150553042 1.0E-05 ATGAGTCAC 9 Pou5f1_MA0142.1 JASPAR - 150552953 150552967 9.0E-06 TTTTAAAATGAAAAT 15 FOXI1_forkhead_full_dimeric_17_1 SELEX - 150552909 150552925 5.0E-06 TTGTGGAGAGAAATCAA 17 Rhox11_homeodomain_DBD_monomeric_9_1 SELEX + 150553152 150553160 2.0E-06 TGCTGTTAA 9 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX - 150549843 150549853 3.0E-06 TTTCCCCACTC 11 Sox11_HMG_DBD_dimeric_15_1 SELEX - 150548743 150548757 4.0E-06 AGCCATTTCAGTGTG 15 HMX2_homeodomain_DBD_monomeric_11_1 SELEX - 150552903 150552913 5.0E-06 ATCAATTAAAC 11 LBX2_homeodomain_DBD_monomeric_10_1 SELEX - 150552904 150552913 1.0E-05 ATCAATTAAA 10 HOXD12_homeodomain_DBD_monomeric_11_1 SELEX + 150549118 150549128 7.0E-06 GATCGTTAAAA 11 RUNX1_MA0002.2 JASPAR - 150548807 150548817 4.0E-06 CTTTGTGGTTA 11 IRF3_IRF_full_trimeric_21_1 SELEX + 150548449 150548469 2.0E-06 GTGGAATGGAAACAGATTGTA 21 ETV6_ETS_full_dimeric_15_1 SELEX - 150549886 150549900 1.0E-06 CAGGAACAGGAAGCA 15 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 150552896 150552910 9.0E-06 AATTAAACAGTAAAT 15 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 150552895 150552912 1.0E-06 TCAATTAAACAGTAAATA 18 HOXC12_homeodomain_DBD_monomeric_11_1 SELEX + 150549118 150549128 8.0E-06 GATCGTTAAAA 11 MNX1_homeodomain_DBD_monomeric_10_1 SELEX - 150552904 150552913 5.0E-06 ATCAATTAAA 10 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 150552192 150552202 3.0E-06 TGCCTCAGGCA 11 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX - 150552192 150552202 6.0E-06 TGCCTGAGGCA 11 PAX7_PAX_full_dimeric_10_1 SELEX + 150552906 150552915 3.0E-06 TAATTGATTT 10 PAX7_PAX_full_dimeric_10_1 SELEX - 150552906 150552915 2.0E-06 AAATCAATTA 10 ONECUT3_CUT_DBD_monomeric_14_1 SELEX - 150552905 150552918 2.0E-06 GAGAAATCAATTAA 14 SOX9_HMG_full_dimeric_17_1 SELEX - 150548742 150548758 5.0E-06 AAGCCATTTCAGTGTGC 17 HMX1_homeodomain_DBD_monomeric_11_1 SELEX - 150552903 150552913 3.0E-06 ATCAATTAAAC 11 RUNX3_RUNX_DBD_dimeric_18_1 SELEX + 150548798 150548815 2.0E-06 AAACCCCTATAACCACAA 18 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 150552895 150552908 2.0E-06 TTAAACAGTAAATA 14 V_MSX3_01_M01341 TRANSFAC - 150552902 150552917 1.0E-06 AGAAATCAATTAAACA 16 V_DBX1_01_M01483 TRANSFAC - 150552899 150552915 7.0E-06 AAATCAATTAAACAGTA 17 V_TCF3_01_M01594 TRANSFAC - 150548789 150548801 8.0E-06 GTTTTGTATTTCT 13 V_TCF3_01_M01594 TRANSFAC + 150553079 150553091 2.0E-06 CCTTTGAATTTCT 13 V_FLI1_Q6_M01208 TRANSFAC + 150549765 150549775 2.0E-06 CAGGAAGTGAG 11 V_OSF2_Q6_M00731 TRANSFAC + 150548809 150548816 1.0E-05 ACCACAAA 8 V_CHOP_01_M00249 TRANSFAC + 150548820 150548832 5.0E-06 GTGTGCAATCCCT 13 V_FOXA2_04_M02749 TRANSFAC - 150552890 150552906 2.0E-06 AAACAGTAAATATAAAG 17 V_HMGIY_Q3_M01010 TRANSFAC + 150549385 150549399 2.0E-06 AAGGCAAATTCTTGT 15 V_EVI1_04_M00081 TRANSFAC - 150548904 150548918 5.0E-06 GGAAAGGAAAGAATA 15 V_AML3_Q6_M01856 TRANSFAC + 150548808 150548815 1.0E-05 AACCACAA 8 V_ETS_B_M00340 TRANSFAC - 150549883 150549896 6.0E-06 AACAGGAAGCAAGC 14 V_GATA3_03_M00351 TRANSFAC - 150548383 150548392 8.0E-06 AAAGATTTAA 10 V_POU5F1_02_M02245 TRANSFAC - 150552953 150552967 9.0E-06 TTTTAAAATGAAAAT 15 V_ISL2_01_M01328 TRANSFAC + 150548417 150548432 5.0E-06 CTCACTCCATTAACTT 16 V_ISL2_01_M01328 TRANSFAC - 150552902 150552917 4.0E-06 AGAAATCAATTAAACA 16 V_IRF2_Q6_M01882 TRANSFAC - 150552951 150552966 2.0E-06 TTTAAAATGAAAATAA 16 V_CEBP_Q2_M00190 TRANSFAC + 150552783 150552796 1.0E-06 ACATTGCGTAAAAC 14 V_IRF3_05_M02767 TRANSFAC + 150548450 150548463 6.0E-06 TGGAATGGAAACAG 14 V_HNF3_Q6_01_M01012 TRANSFAC + 150552890 150552907 4.0E-06 CTTTATATTTACTGTTTA 18 V_HNF3_Q6_01_M01012 TRANSFAC + 150552897 150552914 8.0E-06 TTTACTGTTTAATTGATT 18 V_FOXJ1_03_M02750 TRANSFAC - 150552889 150552904 6.0E-06 ACAGTAAATATAAAGT 16 V_LHX3_01_M01471 TRANSFAC - 150552900 150552916 7.0E-06 GAAATCAATTAAACAGT 17 V_AFP1_Q6_M00616 TRANSFAC + 150551595 150551605 9.0E-06 AAAAACAGCAT 11 V_HOXD13_01_M01404 TRANSFAC - 150552900 150552915 6.0E-06 AAATCAATTAAACAGT 16 V_LYF1_01_M00141 TRANSFAC - 150549166 150549174 9.0E-06 TTTGGGAGG 9 V_PAX6_02_M01391 TRANSFAC + 150552902 150552917 9.0E-06 TGTTTAATTGATTTCT 16 V_CDX_Q5_M00991 TRANSFAC - 150552893 150552910 7.0E-06 AATTAAACAGTAAATATA 18 V_ETS_Q4_M00771 TRANSFAC - 150549765 150549776 7.0E-06 CCTCACTTCCTG 12 V_HNF6_Q6_M00639 TRANSFAC - 150549567 150549578 6.0E-06 TGAAGTCAATCA 12 V_HNF6_Q6_M00639 TRANSFAC - 150552906 150552917 3.0E-06 AGAAATCAATTA 12 V_ELF4_04_M02850 TRANSFAC + 150551802 150551818 2.0E-06 TTTCCAAAAACAAAAGC 17 V_HELIOSA_02_M01004 TRANSFAC - 150551800 150551810 4.0E-06 TTTTGGAAAAT 11 V_LMX1_01_M01409 TRANSFAC - 150552900 150552916 8.0E-06 GAAATCAATTAAACAGT 17 V_LMX1_01_M01409 TRANSFAC + 150552901 150552917 6.0E-06 CTGTTTAATTGATTTCT 17 V_ZFP105_03_M02827 TRANSFAC + 150551803 150551817 5.0E-06 TTCCAAAAACAAAAG 15 V_TCFAP2C_03_M02821 TRANSFAC - 150552190 150552204 8.0E-06 AGTGCCTGAGGCACA 15 V_RUNX1_01_M02257 TRANSFAC - 150548807 150548817 4.0E-06 CTTTGTGGTTA 11 V_GFI1_01_M00250 TRANSFAC + 150548378 150548401 9.0E-06 TCCCTTTAAATCTTTGCAAGTCTC 24 V_HNF1_Q6_M00790 TRANSFAC + 150552895 150552912 1.0E-06 TATTTACTGTTTAATTGA 18 V_XFD3_01_M00269 TRANSFAC - 150552891 150552904 1.0E-06 ACAGTAAATATAAA 14 Ddit3_Cebpa_MA0019.1 JASPAR + 150548820 150548831 3.0E-06 GTGTGCAATCCC 12 V_HES1_Q2_M01009 TRANSFAC + 150551765 150551779 3.0E-06 AACGCTTGTGCTTCG 15 V_AML2_01_M01759 TRANSFAC + 150548808 150548815 1.0E-05 AACCACAA 8 V_HOXB9_01_M01426 TRANSFAC - 150552900 150552915 9.0E-06 AAATCAATTAAACAGT 16 V_HNF1B_04_M02266 TRANSFAC + 150552898 150552909 2.0E-06 TTACTGTTTAAT 12 V_HOXC11_01_M01329 TRANSFAC + 150549115 150549130 5.0E-06 AAAGATCGTTAAAAAG 16 V_HNF1_Q6_01_M01011 TRANSFAC - 150552893 150552913 0.0E+00 ATCAATTAAACAGTAAATATA 21 V_NKX52_01_M01315 TRANSFAC - 150552900 150552916 0.0E+00 GAAATCAATTAAACAGT 17 V_OCT1_04_M00138 TRANSFAC - 150552946 150552968 0.0E+00 GTTTTAAAATGAAAATAATGACA 23 V_OCT1_04_M00138 TRANSFAC + 150552951 150552973 3.0E-06 TTATTTTCATTTTAAAACTAAGA 23 V_UNCX4.1_01_M01458 TRANSFAC - 150552901 150552917 3.0E-06 AGAAATCAATTAAACAG 17 V_GR_01_M00955 TRANSFAC - 150552965 150552991 4.0E-06 CTCTCTGGGCCTTCATGTTCTTAGTTT 27 V_HMX1_02_M01481 TRANSFAC - 150552900 150552916 2.0E-06 GAAATCAATTAAACAGT 17 V_HOXC12_01_M01437 TRANSFAC + 150549115 150549131 7.0E-06 AAAGATCGTTAAAAAGC 17 V_SOX12_04_M02900 TRANSFAC - 150548441 150548456 8.0E-06 CATTCCACAAAGGAAA 16 V_MEF2_04_M00233 TRANSFAC + 150551586 150551607 6.0E-06 GTTGGGGCCAAAAACAGCATTC 22 V_MEF2_04_M00233 TRANSFAC + 150551798 150551819 5.0E-06 GCATTTTCCAAAAACAAAAGCA 22 V_PEBP_Q6_M00984 TRANSFAC + 150548805 150548819 1.0E-05 TATAACCACAAAGCG 15 V_TEL2_Q6_M00678 TRANSFAC - 150549765 150549774 4.0E-06 TCACTTCCTG 10 V_ERBETA_Q5_M01875 TRANSFAC + 150551654 150551668 5.0E-06 GTGACACTGGCCCAG 15 V_PAX8_01_M00717 TRANSFAC - 150552774 150552788 5.0E-06 CAATGTAGAGTGATT 15 V_XFD2_01_M00268 TRANSFAC - 150552891 150552904 7.0E-06 ACAGTAAATATAAA 14 V_NCX_02_M01420 TRANSFAC - 150552899 150552915 4.0E-06 AAATCAATTAAACAGTA 17 V_ARID3A_04_M02735 TRANSFAC + 150552901 150552917 8.0E-06 CTGTTTAATTGATTTCT 17 V_HOXA11_01_M01378 TRANSFAC + 150549115 150549130 4.0E-06 AAAGATCGTTAAAAAG 16 V_PPARA_02_M00518 TRANSFAC - 150548796 150548814 1.0E-06 TGTGGTTATAGGGGTTTTG 19 V_SP3_Q3_M00665 TRANSFAC + 150549392 150549405 7.0E-06 ATTCTTGTGGAAGG 14 V_LIM1_01_M01418 TRANSFAC - 150552900 150552916 3.0E-06 GAAATCAATTAAACAGT 17 V_ELK1_01_M00007 TRANSFAC - 150549883 150549898 5.0E-06 GGAACAGGAAGCAAGC 16 V_GLI3_01_M01596 TRANSFAC - 150553009 150553019 9.0E-06 CTGTGTGGCCT 11 V_BARHL1_01_M01332 TRANSFAC - 150552902 150552917 3.0E-06 AGAAATCAATTAAACA 16 V_CAAT_C_M00200 TRANSFAC - 150551567 150551591 5.0E-06 CCCAACTAACATACTTCTCCACTAG 25 V_FOXL1_04_M02753 TRANSFAC - 150552890 150552906 5.0E-06 AAACAGTAAATATAAAG 17 V_FOXJ3_06_M02855 TRANSFAC - 150549214 150549230 3.0E-06 CACAGCAAAACAGAGAA 17 V_PARP_Q3_M01211 TRANSFAC + 150548787 150548796 8.0E-06 TGAGAAATAC 10 V_MSX1_02_M01412 TRANSFAC - 150552902 150552917 8.0E-06 AGAAATCAATTAAACA 16 V_LMX1B_01_M01363 TRANSFAC + 150552900 150552916 6.0E-06 ACTGTTTAATTGATTTC 17 V_LMX1B_01_M01363 TRANSFAC - 150552901 150552917 9.0E-06 AGAAATCAATTAAACAG 17 V_HNF1B_01_M01425 TRANSFAC - 150551735 150551751 3.0E-06 ATGTGTTAACTAGAGGC 17 V_TCF4_Q5_M00671 TRANSFAC + 150553079 150553086 1.0E-05 CCTTTGAA 8 V_P53_05_M01655 TRANSFAC - 150549376 150549395 8.0E-06 GAATTTGCCTTGGCTTCTCT 20 V_PBX1_03_M01017 TRANSFAC - 150552904 150552915 5.0E-06 AAATCAATTAAA 12 V_ETS1_B_M00339 TRANSFAC + 150549764 150549778 2.0E-06 CCAGGAAGTGAGGGC 15 V_TITF1_Q3_M00432 TRANSFAC + 150552179 150552188 5.0E-06 AATCAAGTGT 10 V_TCFAP2B_04_M02924 TRANSFAC + 150552190 150552204 0.0E+00 TGTGCCTCAGGCACT 15 V_TCFAP2B_04_M02924 TRANSFAC - 150552190 150552204 2.0E-06 AGTGCCTGAGGCACA 15 V_FOXJ2_01_M00422 TRANSFAC - 150552890 150552907 2.0E-06 TAAACAGTAAATATAAAG 18 V_VDR_Q3_M00444 TRANSFAC + 150549866 150549880 1.0E-06 GGGTGAGCAGGGAGA 15 V_YY1_01_M00059 TRANSFAC + 150552952 150552968 4.0E-06 TATTTTCATTTTAAAAC 17 V_BARHL2_01_M01446 TRANSFAC - 150552902 150552917 0.0E+00 AGAAATCAATTAAACA 16 V_LHX5_01_M01353 TRANSFAC - 150552900 150552916 1.0E-06 GAAATCAATTAAACAGT 17 V_LHX5_01_M01353 TRANSFAC + 150552901 150552917 5.0E-06 CTGTTTAATTGATTTCT 17 V_HMX3_02_M01413 TRANSFAC - 150552900 150552916 0.0E+00 GAAATCAATTAAACAGT 17 V_TCFAP2E_03_M02822 TRANSFAC - 150552190 150552204 3.0E-06 AGTGCCTGAGGCACA 15 V_PBX1_Q3_M02028 TRANSFAC + 150552176 150552184 6.0E-06 ATAAATCAA 9 V_PBX1_04_M01357 TRANSFAC - 150551779 150551795 1.0E-05 TTACACATCACATTTCC 17 V_PAX6_01_M00097 TRANSFAC + 150552893 150552913 2.0E-06 TATATTTACTGTTTAATTGAT 21 V_NANOG_02_M01247 TRANSFAC + 150551803 150551822 1.0E-06 TTCCAAAAACAAAAGCAAGA 20 V_OCT4_01_M01125 TRANSFAC + 150552952 150552966 1.0E-05 TATTTTCATTTTAAA 15 V_OCT4_01_M01125 TRANSFAC - 150552953 150552967 1.0E-06 TTTTAAAATGAAAAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.