Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

GAP43 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 2596 growth associated protein 43 chr3 + 115337150 - 115342650 115342150 Transcription Factor Binding Sites   Download all TFBS in the GAP43 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX - 115342065 115342080 2.0E-06 ATGAATATTTAAACAC 16 NEUROD2_bHLH_full_dimeric_10_1 SELEX - 115342686 115342695 1.0E-05 ACCATATGCT 10 SOX10_HMG_full_dimeric_16_1 SELEX + 115346197 115346212 5.0E-06 AAGAAAATGCAGAGTT 16 MYF6_bHLH_full_dimeric_10_1 SELEX - 115343647 115343656 9.0E-06 AACAAATGTT 10 POU2F1_POU_DBD_dimeric_14_1 SELEX + 115342068 115342081 0.0E+00 TTTAAATATTCATG 14 POU2F1_POU_DBD_dimeric_14_1 SELEX - 115342068 115342081 0.0E+00 CATGAATATTTAAA 14 SOX10_HMG_full_dimeric_15_3 SELEX + 115343660 115343674 9.0E-06 ATGCATTTGAGTGAT 15 POU3F3_POU_DBD_monomeric_12_1 SELEX - 115342069 115342080 1.0E-06 ATGAATATTTAA 12 LHX6_homeodomain_full_dimeric_16_1 SELEX + 115346563 115346578 5.0E-06 CTATTAGTATTAATAA 16 SOX9_HMG_full_dimeric_16_1 SELEX + 115346197 115346212 7.0E-06 AAGAAAATGCAGAGTT 16 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 115346486 115346497 1.0E-06 TCTATTAATAGT 12 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 115346486 115346497 0.0E+00 ACTATTAATAGA 12 POU3F2_POU_DBD_monomeric_13_1 SELEX - 115342069 115342081 2.0E-06 CATGAATATTTAA 13 PDX1_homeodomain_DBD_dimeric_18_1 SELEX + 115346562 115346579 2.0E-06 CCTATTAGTATTAATAAA 18 SOX9_HMG_full_dimeric_17_3 SELEX + 115343659 115343675 9.0E-06 AATGCATTTGAGTGATT 17 POU3F4_POU_DBD_monomeric_11_1 SELEX - 115342069 115342079 9.0E-06 TGAATATTTAA 11 SOX8_HMG_full_dimeric_17_1 SELEX + 115343659 115343675 5.0E-06 AATGCATTTGAGTGATT 17 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 115346486 115346497 1.0E-06 TCTATTAATAGT 12 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 115346486 115346497 1.0E-06 ACTATTAATAGA 12 KLF13_C2H2_full_monomeric_18_1 SELEX + 115343273 115343290 6.0E-06 GGACCACGCCCCTAGGAG 18 Pax4_MA0068.1 JASPAR - 115343847 115343876 9.0E-06 TACAAATTGCCCAATTTCCAATACCTGCAC 30 TCF7L1_HMG_full_monomeric_12_1 SELEX - 115346253 115346264 0.0E+00 AAACATCAAAGG 12 TCF7L1_HMG_full_monomeric_12_1 SELEX + 115346493 115346504 8.0E-06 ATAGTTCAAAGA 12 POU4F3_POU_DBD_monomeric_16_1 SELEX - 115342065 115342080 2.0E-06 ATGAATATTTAAACAC 16 POU4F3_POU_DBD_monomeric_16_1 SELEX + 115342068 115342083 1.0E-05 TTTAAATATTCATGAG 16 LEF1_HMG_DBD_monomeric_15_1 SELEX - 115346250 115346264 1.0E-06 AAACATCAAAGGAGG 15 MEF2B_MADS_full_dimeric_12_1 SELEX + 115346486 115346497 1.0E-06 TCTATTAATAGT 12 MEF2B_MADS_full_dimeric_12_1 SELEX - 115346486 115346497 0.0E+00 ACTATTAATAGA 12 POU6F2_POU_DBD_dimeric_16_1 SELEX - 115346572 115346587 6.0E-06 CTAATGCCTTTATTAA 16 Esrra_nuclearreceptor_DBD_dimeric_17_1 SELEX + 115343672 115343688 1.0E-05 GATTTTGGCAAAGGTTA 17 BHLHE23_bHLH_DBD_dimeric_10_1 SELEX + 115342686 115342695 9.0E-06 AGCATATGGT 10 BHLHE23_bHLH_DBD_dimeric_10_1 SELEX - 115342686 115342695 2.0E-06 ACCATATGCT 10 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX - 115342642 115342650 8.0E-06 GTAAAAAAA 9 MEF2A_MA0052.1 JASPAR + 115346487 115346496 2.0E-06 CTATTAATAG 10 MEF2A_MA0052.1 JASPAR - 115346487 115346496 2.0E-06 CTATTAATAG 10 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 115345128 115345137 5.0E-06 CCCATAAAAT 10 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX - 115346210 115346219 9.0E-06 GAAAATTAAC 10 BHLHE22_bHLH_DBD_dimeric_12_1 SELEX + 115342685 115342696 3.0E-06 TAGCATATGGTA 12 BHLHE22_bHLH_DBD_dimeric_12_1 SELEX - 115342685 115342696 3.0E-06 TACCATATGCTA 12 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 115342068 115342081 1.0E-06 TTTAAATATTCATG 14 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 115342068 115342081 0.0E+00 CATGAATATTTAAA 14 POU2F3_POU_DBD_dimeric_12_1 SELEX + 115342069 115342080 1.0E-06 TTAAATATTCAT 12 POU2F3_POU_DBD_dimeric_12_1 SELEX - 115342069 115342080 0.0E+00 ATGAATATTTAA 12 OLIG1_bHLH_DBD_dimeric_10_1 SELEX + 115342686 115342695 5.0E-06 AGCATATGGT 10 OLIG1_bHLH_DBD_dimeric_10_1 SELEX - 115342686 115342695 4.0E-06 ACCATATGCT 10 Tcf7_HMG_DBD_monomeric_12_1 SELEX - 115346253 115346264 0.0E+00 AAACATCAAAGG 12 Tcf7_HMG_DBD_monomeric_12_1 SELEX + 115346493 115346504 6.0E-06 ATAGTTCAAAGA 12 SP1_C2H2_DBD_monomeric_11_1 SELEX + 115343275 115343285 1.0E-05 ACCACGCCCCT 11 HOXA13_homeodomain_full_monomeric_10_1 SELEX + 115345128 115345137 1.0E-05 CCCATAAAAT 10 POU1F1_POU_DBD_monomeric_17_1 SELEX - 115342067 115342083 0.0E+00 CTCATGAATATTTAAAC 17 Klf12_C2H2_DBD_monomeric_15_1 SELEX + 115343274 115343288 5.0E-06 GACCACGCCCCTAGG 15 Atoh1_bHLH_DBD_dimeric_10_1 SELEX - 115342686 115342695 1.0E-05 ACCATATGCT 10 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX + 115345128 115345136 2.0E-06 CCCATAAAA 9 POU3F1_POU_DBD_monomeric_12_2 SELEX - 115342069 115342080 1.0E-06 ATGAATATTTAA 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 115342069 115342080 1.0E-06 TTAAATATTCAT 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 115342069 115342080 0.0E+00 ATGAATATTTAA 12 SPDEF_ETS_full_putative-multimer_16_1 SELEX - 115342582 115342597 0.0E+00 ACAGCAAGAAGTAAAA 16 SOX18_HMG_full_dimeric_15_3 SELEX + 115344879 115344893 1.0E-05 TAGGATACCATTCAA 15 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 115345128 115345137 8.0E-06 CCCATAAAAT 10 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX + 115346151 115346161 8.0E-06 CTTCCCCACCC 11 GBX2_homeodomain_DBD_dimeric_14_1 SELEX + 115343860 115343873 8.0E-06 AAATTGGGCAATTT 14 GBX2_homeodomain_DBD_dimeric_14_1 SELEX - 115343860 115343873 9.0E-06 AAATTGCCCAATTT 14 REST_MA0138.2 JASPAR - 115342657 115342677 2.0E-06 GCGAGCACCACGGCCAGAGCA 21 POU3F3_POU_DBD_dimeric_12_1 SELEX + 115342069 115342080 0.0E+00 TTAAATATTCAT 12 POU3F3_POU_DBD_dimeric_12_1 SELEX - 115342069 115342080 0.0E+00 ATGAATATTTAA 12 BHLHA15_bHLH_DBD_dimeric_10_1 SELEX - 115342686 115342695 4.0E-06 ACCATATGCT 10 OLIG2_bHLH_full_dimeric_10_1 SELEX + 115342686 115342695 9.0E-06 AGCATATGGT 10 OLIG2_bHLH_full_dimeric_10_1 SELEX - 115342686 115342695 3.0E-06 ACCATATGCT 10 POU4F1_POU_DBD_monomeric_14_1 SELEX - 115342067 115342080 3.0E-06 ATGAATATTTAAAC 14 OLIG3_bHLH_DBD_dimeric_10_1 SELEX - 115342686 115342695 3.0E-06 ACCATATGCT 10 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX + 115345128 115345137 4.0E-06 CCCATAAAAT 10 V_HOXA9_01_M01351 TRANSFAC - 115342640 115342656 9.0E-06 GAAGCAGTAAAAAAATT 17 V_LEF1_04_M02774 TRANSFAC + 115346249 115346265 1.0E-06 ACCTCCTTTGATGTTTC 17 V_LEF1_04_M02774 TRANSFAC - 115346492 115346508 5.0E-06 GCATTCTTTGAACTATT 17 TAL1_TCF3_MA0091.1 JASPAR - 115343250 115343261 5.0E-06 CGACCAGCTGGT 12 V_FOXA2_04_M02749 TRANSFAC + 115342629 115342645 8.0E-06 TAAAGGCAAACAATTTT 17 V_NRSF_Q4_M01028 TRANSFAC + 115342658 115342676 3.0E-06 GCTCTGGCCGTGGTGCTCG 19 V_NF1_Q6_01_M00806 TRANSFAC - 115343674 115343690 9.0E-06 TTTAACCTTTGCCAAAA 17 V_CEBP_Q3_M00770 TRANSFAC + 115343672 115343683 5.0E-06 GATTTTGGCAAA 12 V_CEBP_Q3_M00770 TRANSFAC + 115343860 115343871 4.0E-06 AAATTGGGCAAT 12 V_STAT3STAT3_Q3_M01220 TRANSFAC - 115342618 115342631 8.0E-06 TTACGGGGAAATAC 14 V_HMGIY_Q3_M01010 TRANSFAC - 115346195 115346209 2.0E-06 TCTGCATTTTCTTAT 15 V_RORA1_01_M00156 TRANSFAC + 115346511 115346523 3.0E-06 ATAACCAGGTCAT 13 V_NKX29_01_M01352 TRANSFAC + 115344958 115344974 3.0E-06 GCATGAGTACTTAAGTC 17 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC - 115343641 115343652 8.0E-06 AATGTTTGAAAG 12 V_SATB1_Q3_M01723 TRANSFAC + 115346571 115346586 0.0E+00 ATTAATAAAGGCATTA 16 V_FOXJ1_04_M02854 TRANSFAC - 115342591 115342605 2.0E-06 ATTTCACAACAGCAA 15 V_MEF2_02_M00231 TRANSFAC + 115346480 115346501 4.0E-06 TCTTCCTCTATTAATAGTTCAA 22 V_MEF2_02_M00231 TRANSFAC - 115346482 115346503 3.0E-06 CTTTGAACTATTAATAGAGGAA 22 V_POU1F1_Q6_M00744 TRANSFAC - 115342071 115342080 2.0E-06 ATGAATATTT 10 V_SOX11_04_M02899 TRANSFAC - 115342632 115342645 1.0E-05 AAAATTGTTTGCCT 14 V_EAR2_Q2_M01728 TRANSFAC - 115343682 115343695 1.0E-05 TTCTCTTTAACCTT 14 V_OCT_C_M00210 TRANSFAC + 115342680 115342692 3.0E-06 TTCCTTAGCATAT 13 V_AREB6_04_M00415 TRANSFAC - 115343917 115343925 8.0E-06 CTGTTTCTT 9 V_PU1_Q4_M01172 TRANSFAC - 115342237 115342255 2.0E-06 TTCCCTCTCTTCTCCTTTT 19 V_PU1_Q4_M01172 TRANSFAC + 115346550 115346568 2.0E-06 ACTATTCACTTCCCTATTA 19 V_HOXD13_01_M01404 TRANSFAC + 115345125 115345140 4.0E-06 ACACCCATAAAATCCA 16 V_PSX1_01_M01435 TRANSFAC - 115346567 115346583 3.0E-06 TGCCTTTATTAATACTA 17 V_PSX1_01_M01435 TRANSFAC + 115346568 115346584 9.0E-06 AGTATTAATAAAGGCAT 17 V_GM497_04_M02864 TRANSFAC - 115343715 115343730 2.0E-06 ATACGCACACACTCAC 16 V_CDX_Q5_M00991 TRANSFAC - 115346554 115346571 7.0E-06 TACTAATAGGGAAGTGAA 18 V_HBP1_Q2_M01661 TRANSFAC + 115344889 115344897 8.0E-06 TTCAATCAG 9 V_CEBPB_01_M00109 TRANSFAC + 115343860 115343873 3.0E-06 AAATTGGGCAATTT 14 V_OCT2_02_M01761 TRANSFAC - 115342070 115342079 4.0E-06 TGAATATTTA 10 V_HMGA2_01_M01300 TRANSFAC - 115343859 115343873 7.0E-06 AAATTGCCCAATTTC 15 V_SOX13_03_M02797 TRANSFAC + 115342632 115342647 8.0E-06 AGGCAAACAATTTTTT 16 V_TCF3_04_M02816 TRANSFAC - 115346249 115346265 1.0E-06 GAAACATCAAAGGAGGT 17 V_TCF3_04_M02816 TRANSFAC + 115346492 115346508 1.0E-06 AATAGTTCAAAGAATGC 17 V_POU3F2_01_M00463 TRANSFAC - 115346195 115346208 7.0E-06 CTGCATTTTCTTAT 14 V_POU3F2_01_M00463 TRANSFAC - 115346571 115346584 1.0E-06 ATGCCTTTATTAAT 14 V_OCT1_02_M00136 TRANSFAC - 115342066 115342080 5.0E-06 ATGAATATTTAAACA 15 V_HOXB13_01_M01467 TRANSFAC + 115345125 115345140 5.0E-06 ACACCCATAAAATCCA 16 V_HNF1_Q6_M00790 TRANSFAC - 115346543 115346560 9.0E-06 AAGTGAATAGTTAAATGC 18 V_KROX_Q6_M00982 TRANSFAC + 115346155 115346168 8.0E-06 CCCACCCCCTCCCC 14 V_RSRFC4_Q2_M00407 TRANSFAC + 115346484 115346500 2.0E-06 CCTCTATTAATAGTTCA 17 V_HOXB9_01_M01426 TRANSFAC - 115342641 115342656 6.0E-06 GAAGCAGTAAAAAAAT 16 V_HOXB9_01_M01426 TRANSFAC + 115345125 115345140 1.0E-06 ACACCCATAAAATCCA 16 V_MAZ_Q6_01_M02023 TRANSFAC + 115342397 115342410 3.0E-06 GAGGGAGGGAGGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC + 115343258 115343271 1.0E-06 GTCGGAGGAGAGGG 14 V_CDX2_Q5_M00729 TRANSFAC + 115342641 115342654 8.0E-06 ATTTTTTTACTGCT 14 V_MEF2_03_M00232 TRANSFAC + 115346480 115346501 3.0E-06 TCTTCCTCTATTAATAGTTCAA 22 V_MEF2_03_M00232 TRANSFAC - 115346482 115346503 2.0E-06 CTTTGAACTATTAATAGAGGAA 22 V_MATH1_Q2_M01716 TRANSFAC - 115343249 115343258 3.0E-06 CCAGCTGGTG 10 V_NFE4_Q5_M02105 TRANSFAC - 115342462 115342473 4.0E-06 CCCCCTCTCCAC 12 V_NFE4_Q5_M02105 TRANSFAC - 115343262 115343273 5.0E-06 CACCCTCTCCTC 12 V_REST_01_M01256 TRANSFAC + 115342653 115342674 2.0E-06 CTTCTGCTCTGGCCGTGGTGCT 22 V_OCT1_04_M00138 TRANSFAC + 115346195 115346217 5.0E-06 ATAAGAAAATGCAGAGTTAATTT 23 V_TCF7_03_M02817 TRANSFAC - 115346249 115346265 1.0E-06 GAAACATCAAAGGAGGT 17 V_TCF7_03_M02817 TRANSFAC + 115346492 115346508 3.0E-06 AATAGTTCAAAGAATGC 17 V_KLF7_03_M02773 TRANSFAC + 115343272 115343287 0.0E+00 TGGACCACGCCCCTAG 16 V_ARID3A_04_M02735 TRANSFAC - 115346567 115346583 1.0E-05 TGCCTTTATTAATACTA 17 V_SP1_01_M00008 TRANSFAC - 115343275 115343284 1.0E-05 GGGGCGTGGT 10 V_NKX23_01_M01457 TRANSFAC - 115344958 115344973 8.0E-06 ACTTAAGTACTCATGC 16 V_HOXD9_Q2_M01834 TRANSFAC + 115345127 115345136 2.0E-06 ACCCATAAAA 10 V_TFIII_Q6_M00706 TRANSFAC + 115342396 115342404 6.0E-06 AGAGGGAGG 9 V_ELF1_Q6_M00746 TRANSFAC - 115346480 115346491 2.0E-06 AATAGAGGAAGA 12 V_LEF1_Q2_01_M01022 TRANSFAC - 115346252 115346261 6.0E-06 CATCAAAGGA 10 V_TAL1_01_M01591 TRANSFAC + 115341989 115342001 5.0E-06 TATCCTTCTCTGC 13 V_TAL1_01_M01591 TRANSFAC - 115342486 115342498 0.0E+00 TTTCCTTCTCTCT 13 V_CEBPA_01_M00116 TRANSFAC - 115343860 115343873 4.0E-06 AAATTGCCCAATTT 14 V_NKX3A_02_M01383 TRANSFAC + 115344958 115344974 3.0E-06 GCATGAGTACTTAAGTC 17 V_AIRE_01_M00999 TRANSFAC + 115341967 115341992 1.0E-05 ATATCTCCTGGATTGACTGGAATATC 26 V_TCF7_04_M02921 TRANSFAC - 115343868 115343882 2.0E-06 GTGTATTACAAATTG 15 V_TCF7_04_M02921 TRANSFAC - 115346566 115346580 4.0E-06 CTTTATTAATACTAA 15 V_NRSF_01_M00256 TRANSFAC - 115342657 115342677 1.0E-06 GCGAGCACCACGGCCAGAGCA 21 V_REST_02_M02256 TRANSFAC - 115342657 115342677 2.0E-06 GCGAGCACCACGGCCAGAGCA 21 V_RSRFC4_01_M00026 TRANSFAC + 115346484 115346499 2.0E-06 CCTCTATTAATAGTTC 16 V_RSRFC4_01_M00026 TRANSFAC - 115346484 115346499 3.0E-06 GAACTATTAATAGAGG 16 V_ZABC1_01_M01306 TRANSFAC - 115343654 115343661 1.0E-05 ATTCCAAC 8 V_ZFP281_01_M01597 TRANSFAC + 115342120 115342130 9.0E-06 TGGGGGTAGGG 11 V_ZFP281_01_M01597 TRANSFAC - 115346154 115346164 5.0E-06 AGGGGGTGGGG 11 V_CEBPB_Q6_M01896 TRANSFAC + 115342597 115342606 4.0E-06 TTGTGAAATA 10 V_LEF1TCF1_Q4_M00978 TRANSFAC + 115346253 115346263 0.0E+00 CCTTTGATGTT 11 V_ZFP281_04_M02831 TRANSFAC + 115346152 115346166 2.0E-06 TTCCCCACCCCCTCC 15 V_HNF1A_Q5_M02013 TRANSFAC + 115346209 115346219 6.0E-06 AGTTAATTTTC 11 V_SATB1_01_M01232 TRANSFAC + 115346564 115346575 0.0E+00 TATTAGTATTAA 12 V_SATB1_01_M01232 TRANSFAC - 115346566 115346577 6.0E-06 TATTAATACTAA 12 V_UF1H3BETA_Q6_M01068 TRANSFAC - 115346153 115346166 5.0E-06 GGAGGGGGTGGGGA 14 V_CEBP_Q2_01_M00912 TRANSFAC - 115343860 115343871 1.0E-06 ATTGCCCAATTT 12 V_BRN3C_01_M01408 TRANSFAC + 115346567 115346582 4.0E-06 TAGTATTAATAAAGGC 16 V_SOX5_07_M02909 TRANSFAC - 115342632 115342648 4.0E-06 AAAAAAATTGTTTGCCT 17 V_TCF3_05_M02920 TRANSFAC - 115342640 115342654 2.0E-06 AGCAGTAAAAAAATT 15 V_ATATA_B_M00311 TRANSFAC + 115344964 115344973 5.0E-06 GTACTTAAGT 10 V_GLIS2_04_M02863 TRANSFAC - 115346484 115346497 7.0E-06 ACTATTAATAGAGG 14 V_GLIS2_04_M02863 TRANSFAC + 115346568 115346581 0.0E+00 AGTATTAATAAAGG 14 V_CEBPA_Q6_M01866 TRANSFAC + 115343860 115343872 1.0E-06 AAATTGGGCAATT 13 V_NANOG_02_M01247 TRANSFAC - 115346248 115346267 9.0E-06 TTGAAACATCAAAGGAGGTT 20 V_TCF4_01_M01705 TRANSFAC + 115346253 115346261 5.0E-06 CCTTTGATG 9

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.