Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ARIH1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 25820 ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) chr15 + 72761666 - 72767166 72766666 Transcription Factor Binding Sites   Download all TFBS in the ARIH1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX - 72765848 72765857 8.0E-06 ATCATAAAAA 10 Foxa2_MA0047.2 JASPAR + 72766037 72766048 0.0E+00 TGTTTACATTGT 12 HOXA10_homeodomain_DBD_monomeric_12_1 SELEX - 72765847 72765858 1.0E-06 AATCATAAAAAT 12 FOXA1_MA0148.1 JASPAR + 72766037 72766047 0.0E+00 TGTTTACATTG 11 RFX4_RFX_DBD_dimeric_16_1 SELEX + 72766230 72766245 5.0E-06 AGTAGCCAAAGCAACA 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 72766230 72766245 2.0E-06 TGTTGCTTTGGCTACT 16 EBF1_EBF_full_dimeric_14_1 SELEX + 72766330 72766343 5.0E-06 GTCCCCAAGGGACT 14 FOXL1_forkhead_full_dimeric_13_1 SELEX + 72767838 72767850 9.0E-06 AGTTAATAAAGAA 13 FOXO3_MA0157.1 JASPAR - 72766037 72766044 7.0E-06 TGTAAACA 8 RARG_nuclearreceptor_full_dimeric_17_1 SELEX - 72765521 72765537 8.0E-06 GGGGTCATGTCAGTTAA 17 HINFP1_C2H2_full_monomeric_12_1 SELEX + 72766950 72766961 1.0E-05 CAGCGTCCGCCG 12 EWSR1-FLI1_MA0149.1 JASPAR - 72766770 72766787 6.0E-06 GGGAGGGAGGGAGCGAGG 18 STAT1_MA0137.2 JASPAR - 72767900 72767914 8.0E-06 CTCTTCCGAGAAATA 15 EBF1_MA0154.1 JASPAR + 72766332 72766341 5.0E-06 CCCCAAGGGA 10 HOXD11_homeodomain_DBD_monomeric_10_1 SELEX - 72765848 72765857 3.0E-06 ATCATAAAAA 10 XBP1_bZIP_DBD_dimeric_12_1 SELEX + 72766103 72766114 1.0E-06 AATGACGTCATT 12 XBP1_bZIP_DBD_dimeric_12_1 SELEX - 72766103 72766114 1.0E-06 AATGACGTCATT 12 HOXC11_homeodomain_full_monomeric_11_1 SELEX - 72765848 72765858 7.0E-06 AATCATAAAAA 11 Creb5_bZIP_DBD_dimeric_12_1 SELEX + 72766103 72766114 0.0E+00 AATGACGTCATT 12 Creb5_bZIP_DBD_dimeric_12_1 SELEX - 72766103 72766114 0.0E+00 AATGACGTCATT 12 TCF7L1_HMG_full_monomeric_12_1 SELEX - 72767970 72767981 5.0E-06 AAACAGCAAAGA 12 JDP2_bZIP_full_dimeric_12_1 SELEX + 72766103 72766114 1.0E-06 AATGACGTCATT 12 JDP2_bZIP_full_dimeric_12_1 SELEX - 72766103 72766114 1.0E-06 AATGACGTCATT 12 TEAD1_TEA_full_monomeric_10_1 SELEX - 72767320 72767329 6.0E-06 TACATTCCAC 10 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX - 72765848 72765857 1.0E-06 ATCATAAAAA 10 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX - 72765849 72765858 4.0E-06 AATCATAAAA 10 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 72766230 72766245 6.0E-06 AGTAGCCAAAGCAACA 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 72766230 72766245 9.0E-06 TGTTGCTTTGGCTACT 16 POU6F2_POU_DBD_dimeric_16_1 SELEX - 72766101 72766116 2.0E-06 ATAATGACGTCATTTT 16 Foxq1_MA0040.1 JASPAR + 72766043 72766053 9.0E-06 CATTGTTTAGG 11 ATF7_bZIP_DBD_dimeric_14_1 SELEX + 72766102 72766115 0.0E+00 AAATGACGTCATTA 14 ATF7_bZIP_DBD_dimeric_14_1 SELEX - 72766102 72766115 0.0E+00 TAATGACGTCATTT 14 HOXC11_homeodomain_full_monomeric_11_2 SELEX - 72765848 72765858 4.0E-06 AATCATAAAAA 11 CREB3_bZIP_full_dimeric_14_1 SELEX + 72766102 72766115 1.0E-06 AAATGACGTCATTA 14 CREB3_bZIP_full_dimeric_14_1 SELEX - 72766102 72766115 2.0E-06 TAATGACGTCATTT 14 HOXC11_homeodomain_DBD_monomeric_11_1 SELEX - 72765848 72765858 2.0E-06 AATCATAAAAA 11 Tcf7_HMG_DBD_monomeric_12_1 SELEX - 72767970 72767981 7.0E-06 AAACAGCAAAGA 12 RFX2_RFX_DBD_dimeric_16_1 SELEX + 72766230 72766245 5.0E-06 AGTAGCCAAAGCAACA 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 72766230 72766245 4.0E-06 TGTTGCTTTGGCTACT 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 72766230 72766245 3.0E-06 AGTAGCCAAAGCAACA 16 TBX2_TBX_full_monomeric_11_1 SELEX - 72765605 72765615 6.0E-06 AAGGTGTCAAG 11 HESX1_homeodomain_DBD_dimeric_15_1 SELEX - 72767987 72768001 7.0E-06 AAAAGTAGCAATTAG 15 LHX9_homeodomain_DBD_dimeric_13_1 SELEX + 72767988 72768000 4.0E-06 TAATTGCTACTTT 13 TEAD3_TEA_DBD_monomeric_8_1 SELEX - 72767321 72767328 1.0E-05 ACATTCCA 8 Hoxa11_homeodomain_DBD_monomeric_12_1 SELEX - 72765847 72765858 2.0E-06 AATCATAAAAAT 12 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 72765917 72765931 8.0E-06 AGAAAGGAAAAGGGA 15 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX + 72766447 72766455 9.0E-06 CACATAAAA 9 Pou5f1_MA0142.1 JASPAR - 72765831 72765845 0.0E+00 CTTTGTAATGTAGAT 15 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX - 72765848 72765857 2.0E-06 ATCATAAAAA 10 TBX20_TBX_DBD_monomeric_15_1 SELEX - 72765604 72765618 5.0E-06 CAGAAGGTGTCAAGT 15 VDR_nuclearreceptor_full_dimeric_16_1 SELEX + 72767335 72767350 0.0E+00 GAGGTCAACGAGGTCA 16 Hoxd9_homeodomain_DBD_monomeric_9_2 SELEX - 72765849 72765857 8.0E-06 ATCATAAAA 9 HOXD12_homeodomain_DBD_monomeric_11_1 SELEX - 72765848 72765858 4.0E-06 AATCATAAAAA 11 TEAD4_TEA_DBD_monomeric_10_1 SELEX - 72767320 72767329 8.0E-06 TACATTCCAC 10 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX - 72765848 72765858 7.0E-06 AATCATAAAAA 11 Sox2_MA0143.1 JASPAR - 72765832 72765846 2.0E-06 GCTTTGTAATGTAGA 15 HOXC12_homeodomain_DBD_monomeric_11_1 SELEX - 72765848 72765858 8.0E-06 AATCATAAAAA 11 DPRX_homeodomain_DBD_monomeric_11_1 SELEX - 72765409 72765419 7.0E-06 GAGATAATCTG 11 BATF3_bZIP_DBD_dimeric_14_1 SELEX + 72766102 72766115 1.0E-06 AAATGACGTCATTA 14 BATF3_bZIP_DBD_dimeric_14_1 SELEX - 72766102 72766115 1.0E-06 TAATGACGTCATTT 14 FOXB1_forkhead_DBD_monomeric_11_1 SELEX - 72766036 72766046 8.0E-06 AATGTAAACAG 11 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX - 72765848 72765858 6.0E-06 AATCATAAAAA 11 Irx3_homeodomain_DBD_dimeric_12_1 SELEX + 72765833 72765844 3.0E-06 CTACATTACAAA 12 Zfx_MA0146.1 JASPAR + 72767433 72767446 6.0E-06 CAGGCCTGGGCCTG 14 Zfx_MA0146.1 JASPAR - 72767433 72767446 3.0E-06 CAGGCCCAGGCCTG 14 V_DMRT4_01_M01149 TRANSFAC - 72767988 72768000 1.0E-06 AAAGTAGCAATTA 13 V_HOXA9_01_M01351 TRANSFAC - 72767958 72767974 3.0E-06 AAAGACATAAAAAAGAT 17 V_CDP_03_M01342 TRANSFAC + 72767835 72767851 6.0E-06 ACCAGTTAATAAAGAAA 17 V_MEIS1_02_M01419 TRANSFAC + 72766181 72766196 7.0E-06 GTTCACCTGTCATACA 16 V_STAT5A_Q6_M01890 TRANSFAC + 72767899 72767911 1.0E-06 GTATTTCTCGGAA 13 V_DBX1_01_M01483 TRANSFAC + 72767837 72767853 5.0E-06 CAGTTAATAAAGAAATG 17 V_PREP1_01_M01459 TRANSFAC + 72766181 72766196 5.0E-06 GTTCACCTGTCATACA 16 V_GEN_INI_B_M00315 TRANSFAC + 72767761 72767768 1.0E-05 CCTCATTT 8 V_TCF3_01_M01594 TRANSFAC - 72765834 72765846 2.0E-06 GCTTTGTAATGTA 13 V_MEQCJUN_02_M02048 TRANSFAC + 72766103 72766113 0.0E+00 AATGACGTCAT 11 V_MEQCJUN_02_M02048 TRANSFAC - 72766104 72766114 0.0E+00 AATGACGTCAT 11 V_EBF_Q6_M00977 TRANSFAC - 72766332 72766342 1.0E-05 GTCCCTTGGGG 11 V_FOXO3_02_M02270 TRANSFAC - 72766037 72766044 7.0E-06 TGTAAACA 8 V_ATF5_01_M01295 TRANSFAC + 72765442 72765452 3.0E-06 CTTCTTCCTTC 11 V_FOXA2_04_M02749 TRANSFAC - 72766032 72766048 1.0E-05 ACAATGTAAACAGCGAT 17 V_DMRT3_01_M01148 TRANSFAC + 72767988 72768002 2.0E-06 TAATTGCTACTTTTT 15 V_HMGIY_Q3_M01010 TRANSFAC + 72765842 72765856 5.0E-06 AAAGCATTTTTATGA 15 V_ETS_B_M00340 TRANSFAC + 72766083 72766096 8.0E-06 TGGAGGAAATGCCT 14 V_GATA3_03_M00351 TRANSFAC + 72765486 72765495 8.0E-06 AAAGATTTAA 10 V_POU5F1_02_M02245 TRANSFAC - 72765831 72765845 0.0E+00 CTTTGTAATGTAGAT 15 V_SP1_Q6_01_M00931 TRANSFAC + 72767683 72767692 4.0E-06 GGGGCGGGGC 10 V_CREB_Q4_01_M00917 TRANSFAC + 72766102 72766112 6.0E-06 AAATGACGTCA 11 V_OCT1_Q5_01_M00930 TRANSFAC - 72766022 72766032 5.0E-06 TGATTTTCATG 11 V_GATA1_03_M00127 TRANSFAC + 72767267 72767280 1.0E-06 AGGAGGATTACCGC 14 V_HNF3_Q6_01_M01012 TRANSFAC + 72766032 72766049 4.0E-06 ATCGCTGTTTACATTGTT 18 V_CUX1_03_M02958 TRANSFAC + 72767835 72767851 6.0E-06 ACCAGTTAATAAAGAAA 17 V_STAT5B_01_M00459 TRANSFAC + 72767900 72767914 5.0E-06 TATTTCTCGGAAGAG 15 V_JUNDM2_03_M02772 TRANSFAC + 72766101 72766116 1.0E-06 AAAATGACGTCATTAT 16 V_JUNDM2_03_M02772 TRANSFAC - 72766101 72766116 1.0E-06 ATAATGACGTCATTTT 16 V_OCT_C_M00210 TRANSFAC - 72766021 72766033 5.0E-06 ATGATTTTCATGA 13 V_HOXC6_01_M01406 TRANSFAC + 72767836 72767852 8.0E-06 CCAGTTAATAAAGAAAT 17 V_ZFP691_03_M02833 TRANSFAC + 72766006 72766022 2.0E-06 TACACAGTGCTCAATTC 17 V_CDX_Q5_M00991 TRANSFAC + 72765343 72765360 1.0E-06 AACAGTAAGATTTATCAA 18 V_MEF2A_Q6_M02024 TRANSFAC - 72765879 72765888 8.0E-06 TATTTTAACC 10 V_BARBIE_01_M00238 TRANSFAC + 72767877 72767891 8.0E-06 ACTTAAAGGTGGGGG 15 V_PPARGRXRA_01_M02262 TRANSFAC + 72765886 72765900 4.0E-06 ATAGGGCAAGGGTTA 15 V_TRF1_01_M01237 TRANSFAC + 72765886 72765900 7.0E-06 ATAGGGCAAGGGTTA 15 RXRA_VDR_MA0074.1 JASPAR + 72767336 72767350 5.0E-06 AGGTCAACGAGGTCA 15 V_GC_01_M00255 TRANSFAC + 72767559 72767572 5.0E-06 TGGGGGCGGTGCTT 14 V_GEN_INI3_B_M00314 TRANSFAC + 72767761 72767768 1.0E-05 CCTCATTT 8 V_MEIS2_01_M01488 TRANSFAC + 72766181 72766196 8.0E-06 GTTCACCTGTCATACA 16 V_LMX1_01_M01409 TRANSFAC + 72767836 72767852 7.0E-06 CCAGTTAATAAAGAAAT 17 V_FOXO1_02_M00474 TRANSFAC + 72766033 72766046 8.0E-06 TCGCTGTTTACATT 14 V_RXRA_03_M02791 TRANSFAC + 72765526 72765542 1.0E-06 TGACATGACCCCTGACT 17 V_GFI1_01_M00250 TRANSFAC + 72765355 72765378 4.0E-06 TATCAACAAATCAGGGGTTTTGAT 24 V_SOX8_04_M02912 TRANSFAC + 72766017 72766030 9.0E-06 CAATTCATGAAAAT 14 V_NKX26_01_M01322 TRANSFAC - 72767863 72767878 6.0E-06 GTAGGCACTTGAGACT 16 V_PAX9_B_M00329 TRANSFAC + 72766605 72766628 3.0E-06 GTGACGCAAAGAGGAGTGACGCGA 24 V_HOXB9_01_M01426 TRANSFAC - 72767959 72767974 9.0E-06 AAAGACATAAAAAAGA 16 V_IRF3_Q3_M01279 TRANSFAC + 72765917 72765929 3.0E-06 TCCCTTTTCCTTT 13 V_HNF3A_01_M01261 TRANSFAC - 72766036 72766045 3.0E-06 ATGTAAACAG 10 V_MAZ_Q6_01_M02023 TRANSFAC - 72766776 72766789 3.0E-06 GAGGGAGGGAGGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC - 72766780 72766793 3.0E-06 GGAGGAGGGAGGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC - 72766797 72766810 6.0E-06 GGCGGCGGGGAGGG 14 V_TTF1_Q6_M00794 TRANSFAC + 72766055 72766066 2.0E-06 CCCTCAAGAGGC 12 V_NKX22_02_M01372 TRANSFAC - 72767862 72767878 5.0E-06 GTAGGCACTTGAGACTG 17 V_OCT1_04_M00138 TRANSFAC - 72765824 72765846 9.0E-06 GCTTTGTAATGTAGATATATTAT 23 V_PPARG_03_M00528 TRANSFAC + 72765884 72765900 4.0E-06 AAATAGGGCAAGGGTTA 17 V_HOXC12_01_M01437 TRANSFAC - 72765845 72765861 3.0E-06 ATGAATCATAAAAATGC 17 V_GR_Q6_M00192 TRANSFAC - 72765817 72765835 4.0E-06 TAGATATATTATGTACTAT 19 V_MUSCLE_INI_B_M00321 TRANSFAC - 72767204 72767224 2.0E-06 CGCCGCCGCCACCGCCGGGCC 21 V_XFD2_01_M00268 TRANSFAC - 72766033 72766046 5.0E-06 AATGTAAACAGCGA 14 V_EBF1_01_M02267 TRANSFAC + 72766332 72766341 5.0E-06 CCCCAAGGGA 10 V_PROP1_02_M01320 TRANSFAC + 72767836 72767852 9.0E-06 CCAGTTAATAAAGAAAT 17 V_TBX5_01_M01019 TRANSFAC - 72765605 72765616 8.0E-06 GAAGGTGTCAAG 12 V_HOXD9_Q2_M01834 TRANSFAC + 72765506 72765515 6.0E-06 AGGCATAAAA 10 V_HOXD9_Q2_M01834 TRANSFAC - 72765849 72765858 2.0E-06 AATCATAAAA 10 V_HOXD9_Q2_M01834 TRANSFAC - 72767963 72767972 4.0E-06 AGACATAAAA 10 V_OTX2_Q3_M01719 TRANSFAC + 72767780 72767792 0.0E+00 GAAGGGATTAGAG 13 V_HBP1_04_M02866 TRANSFAC - 72765949 72765965 7.0E-06 AGTACCCATTTTATACC 17 V_CREM_Q6_M01820 TRANSFAC + 72766105 72766115 5.0E-06 TGACGTCATTA 11 V_VJUN_01_M00036 TRANSFAC + 72766101 72766116 0.0E+00 AAAATGACGTCATTAT 16 V_VJUN_01_M00036 TRANSFAC - 72766101 72766116 0.0E+00 ATAATGACGTCATTTT 16 V_MINI19_B_M00323 TRANSFAC + 72766569 72766589 5.0E-06 CCCGGGCTCCACGCAGGGGCG 21 V_MTF1_06_M02882 TRANSFAC + 72767838 72767851 1.0E-05 AGTTAATAAAGAAA 14 V_MRG2_01_M01395 TRANSFAC + 72766181 72766196 7.0E-06 GTTCACCTGTCATACA 16 V_BARHL1_01_M01332 TRANSFAC - 72767984 72767999 7.0E-06 AAGTAGCAATTAGGTC 16 V_ZBTB3_03_M02825 TRANSFAC + 72766127 72766143 5.0E-06 AAAACCACTGCACGTCT 17 V_OCT1_Q6_M00195 TRANSFAC + 72765990 72766004 4.0E-06 ATATATGTAAAGCCC 15 V_OCT1_Q6_M00195 TRANSFAC + 72766019 72766033 1.0E-05 ATTCATGAAAATCAT 15 V_NKX3A_02_M01383 TRANSFAC - 72767764 72767780 8.0E-06 CCAAAAGTGCTCAAATG 17 V_ATF1_03_M02738 TRANSFAC - 72766101 72766116 1.0E-06 ATAATGACGTCATTTT 16 V_PITX1_01_M01484 TRANSFAC + 72767778 72767794 2.0E-06 TGGAAGGGATTAGAGTA 17 V_TEF1_Q6_03_M01817 TRANSFAC + 72767320 72767328 6.0E-06 GTGGAATGT 9 V_GEN_INI2_B_M00313 TRANSFAC + 72767761 72767768 1.0E-05 CCTCATTT 8 V_ATF2_Q5_M01862 TRANSFAC + 72766102 72766113 1.0E-06 AAATGACGTCAT 12 V_ESRRA_04_M02852 TRANSFAC - 72765526 72765542 2.0E-06 AGTCAGGGGTCATGTCA 17 V_DMRT7_01_M01151 TRANSFAC + 72766037 72766050 9.0E-06 TGTTTACATTGTTT 14 V_MYB_Q5_01_M00913 TRANSFAC + 72765522 72765530 4.0E-06 TAACTGACA 9 V_STAT1STAT1_Q3_M01212 TRANSFAC + 72767901 72767913 1.0E-06 ATTTCTCGGAAGA 13 V_FOXA2_03_M02260 TRANSFAC + 72766037 72766048 0.0E+00 TGTTTACATTGT 12 V_PLZF_02_M01075 TRANSFAC - 72765815 72765843 5.0E-06 TTGTAATGTAGATATATTATGTACTATGT 29 V_SIX4_01_M01374 TRANSFAC + 72765602 72765618 2.0E-06 TTACTTGACACCTTCTG 17 V_ZFP281_01_M01597 TRANSFAC + 72767886 72767896 5.0E-06 TGGGGGAAGGG 11 V_DMRT2_01_M01147 TRANSFAC + 72767987 72768002 1.0E-06 CTAATTGCTACTTTTT 16 V_SOX2_01_M02246 TRANSFAC - 72765832 72765846 2.0E-06 GCTTTGTAATGTAGA 15 V_ZFP281_04_M02831 TRANSFAC - 72767884 72767898 1.0E-06 TTCCCTTCCCCCACC 15 V_EWSR1FLI1_01_M02252 TRANSFAC - 72766770 72766787 6.0E-06 GGGAGGGAGGGAGCGAGG 18 V_SOX4_01_M01308 TRANSFAC - 72766658 72766665 1.0E-05 AACAAAGG 8 V_GSC_01_M01428 TRANSFAC - 72767779 72767795 5.0E-06 CTACTCTAATCCCTTCC 17 V_DR3_Q4_M00966 TRANSFAC - 72767332 72767352 4.0E-06 GATGACCTCGTTGACCTCCCG 21 V_IRF1_01_M00062 TRANSFAC - 72765370 72765382 4.0E-06 TAAAATCAAAACC 13 V_UF1H3BETA_Q6_M01068 TRANSFAC + 72767884 72767897 0.0E+00 GGTGGGGGAAGGGA 14 V_HNF4_01_M00134 TRANSFAC + 72765885 72765903 2.0E-06 AATAGGGCAAGGGTTATGT 19 V_BRCA_01_M01082 TRANSFAC - 72766241 72766248 1.0E-05 TTCTGTTG 8 V_FOXK1_03_M02752 TRANSFAC - 72766032 72766048 8.0E-06 ACAATGTAAACAGCGAT 17 V_VDRRXR_01_M01202 TRANSFAC + 72767336 72767350 5.0E-06 AGGTCAACGAGGTCA 15 V_RFX1_02_M00281 TRANSFAC + 72766229 72766246 0.0E+00 CAGTAGCCAAAGCAACAG 18 PPARG_RXRA_MA0065.2 JASPAR + 72765886 72765900 4.0E-06 ATAGGGCAAGGGTTA 15 V_DMRT5_01_M01150 TRANSFAC + 72767989 72768003 1.0E-06 AATTGCTACTTTTTC 15 V_SPI1_02_M02043 TRANSFAC + 72767892 72767901 6.0E-06 AAGGGAAGTA 10 V_OCT4_01_M01125 TRANSFAC - 72765831 72765845 0.0E+00 CTTTGTAATGTAGAT 15 V_TCF11_01_M00285 TRANSFAC + 72766109 72766121 8.0E-06 GTCATTATAGGAG 13 V_OTX3_01_M01403 TRANSFAC + 72767778 72767794 5.0E-06 TGGAAGGGATTAGAGTA 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.