Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

LMOD1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 25802 leiomodin 1 (smooth muscle) chr1 - 201915216 - 201920716 201915716 Transcription Factor Binding Sites   Download all TFBS in the LMOD1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX - 201911105 201911124 5.0E-06 TTGTCCTTGTCTCAGGTTTC 20 SOX10_HMG_full_dimeric_16_1 SELEX + 201918794 201918809 3.0E-06 AAAAATATTCACTGCT 16 IRF7_IRF_DBD_dimeric_14_1 SELEX + 201916372 201916385 6.0E-06 CCAAAACTGAAAAC 14 ZNF713_C2H2_full_monomeric_17_1 SELEX - 201916812 201916828 4.0E-06 TGGAAAGATGCCAGGAA 17 RARA_nuclearreceptor_full_dimeric_18_1 SELEX + 201910852 201910869 6.0E-06 GAAGGTCAGGAGGGCTCA 18 SOX9_HMG_full_dimeric_16_1 SELEX + 201918794 201918809 9.0E-06 AAAAATATTCACTGCT 16 SOX8_HMG_DBD_dimeric_16_1 SELEX + 201918794 201918809 6.0E-06 AAAAATATTCACTGCT 16 RARG_nuclearreceptor_full_dimeric_17_1 SELEX + 201910853 201910869 6.0E-06 AAGGTCAGGAGGGCTCA 17 EWSR1-FLI1_MA0149.1 JASPAR - 201916810 201916827 2.0E-06 GGAAAGATGCCAGGAAAG 18 ZNF232_C2H2_full_monomeric_19_1 SELEX - 201911357 201911375 1.0E-05 GGGCAAAATGCAAATGCAG 19 NFIX_NFI_full_dimeric_15_2 SELEX + 201916815 201916829 2.0E-06 CTGGCATCTTTCCAT 15 POU1F1_POU_DBD_monomeric_14_1 SELEX - 201911358 201911371 4.0E-06 AAAATGCAAATGCA 14 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX + 201910852 201910869 2.0E-06 GAAGGTCAGGAGGGCTCA 18 POU2F2_POU_DBD_monomeric_11_1 SELEX - 201911360 201911370 8.0E-06 AAATGCAAATG 11 POU3F4_POU_DBD_monomeric_9_1 SELEX - 201911361 201911369 7.0E-06 AATGCAAAT 9 SCRT2_C2H2_DBD_monomeric_13_1 SELEX + 201916648 201916660 5.0E-06 TTGCAACAGGTCT 13 IRF1_MA0050.1 JASPAR + 201916374 201916385 5.0E-06 AAAACTGAAAAC 12 IRF1_MA0050.1 JASPAR - 201916443 201916454 7.0E-06 GAAAGTGACAGC 12 RUNX2_RUNX_DBD_dimeric_18_1 SELEX - 201918875 201918892 6.0E-06 AAACCACTGAAACCAGAT 18 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX + 201910853 201910869 4.0E-06 AAGGTCAGGAGGGCTCA 17 SP1_MA0079.2 JASPAR - 201910812 201910821 3.0E-06 CCCCTCCCCC 10 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX + 201910853 201910869 0.0E+00 AAGGTCAGGAGGGCTCA 17 TEAD3_TEA_DBD_monomeric_8_1 SELEX + 201915796 201915803 1.0E-05 ACATTCCA 8 Stat3_MA0144.1 JASPAR - 201916811 201916820 7.0E-06 TGCCAGGAAA 10 IRF9_IRF_full_trimeric_15_1 SELEX + 201916371 201916385 4.0E-06 ACCAAAACTGAAAAC 15 GSC_homeodomain_full_monomeric_10_1 SELEX + 201910986 201910995 8.0E-06 GCTAATCCCC 10 POU2F1_POU_DBD_monomeric_12_1 SELEX - 201911360 201911371 5.0E-06 AAAATGCAAATG 12 IRF4_IRF_full_dimeric_15_1 SELEX + 201916372 201916386 4.0E-06 CCAAAACTGAAAACT 15 IRF5_IRF_full_dimeric_14_1 SELEX + 201916372 201916385 8.0E-06 CCAAAACTGAAAAC 14 HOXC12_homeodomain_DBD_monomeric_11_1 SELEX - 201916002 201916012 7.0E-06 AGTAGTAAAAT 11 RUNX3_RUNX_DBD_dimeric_18_1 SELEX - 201918875 201918892 8.0E-06 AAACCACTGAAACCAGAT 18 V_TCFE2A_04_M02927 TRANSFAC - 201918868 201918884 3.0E-06 GAAACCAGATGGTACAG 17 V_AREB6_03_M00414 TRANSFAC - 201916096 201916107 6.0E-06 ATACACCTGGGA 12 V_XPF1_Q6_M00684 TRANSFAC - 201919054 201919063 1.0E-06 TCAGAAGAAC 10 V_NF1_Q6_01_M00806 TRANSFAC + 201918781 201918797 2.0E-06 CAGGCTTTTTGCCAAAA 17 V_CEBP_Q3_M00770 TRANSFAC + 201916072 201916083 5.0E-06 GTATTTGGTAAT 12 V_CEBP_Q3_M00770 TRANSFAC - 201918788 201918799 7.0E-06 ATTTTTGGCAAA 12 V_NF1A_Q6_M02103 TRANSFAC + 201918781 201918796 0.0E+00 CAGGCTTTTTGCCAAA 16 V_IRF_Q6_01_M00972 TRANSFAC + 201916374 201916384 1.0E-06 AAAACTGAAAA 11 V_IRF_Q6_01_M00972 TRANSFAC - 201918890 201918900 6.0E-06 AAAAAAGAAAA 11 V_ZFP740_03_M02834 TRANSFAC + 201910938 201910953 1.0E-05 CCTCCACCCCCACCAG 16 V_CEBP_C_M00201 TRANSFAC + 201916071 201916088 1.0E-06 AGTATTTGGTAATGTGCT 18 V_OCT1_01_M00135 TRANSFAC - 201911356 201911374 7.0E-06 GGCAAAATGCAAATGCAGG 19 V_CEBP_01_M00159 TRANSFAC + 201916073 201916085 0.0E+00 TATTTGGTAATGT 13 V_POU2F3_01_M01476 TRANSFAC - 201911357 201911372 8.0E-06 CAAAATGCAAATGCAG 16 V_SP1_03_M02281 TRANSFAC - 201910812 201910821 3.0E-06 CCCCTCCCCC 10 V_OCT_C_M00210 TRANSFAC + 201911358 201911370 6.0E-06 TGCATTTGCATTT 13 V_HNF4A_04_M02764 TRANSFAC + 201911256 201911272 6.0E-06 AAGCTGGGGTCAATTCT 17 V_LYF1_01_M00141 TRANSFAC + 201916396 201916404 9.0E-06 TTTGGGAAA 9 V_CEBPB_01_M00109 TRANSFAC + 201916072 201916085 5.0E-06 GTATTTGGTAATGT 14 V_HNF1_C_M00206 TRANSFAC + 201916905 201916921 8.0E-06 TGCCATTTAATGTCCAC 17 V_AP1_Q6_M00174 TRANSFAC + 201919064 201919074 5.0E-06 CATGACTCAGT 11 V_NFY_C_M00209 TRANSFAC - 201916782 201916795 8.0E-06 CCTGATGGGTTACA 14 V_POU3F2_01_M00463 TRANSFAC - 201915888 201915901 9.0E-06 ACGCATTTTTGTAT 14 V_CEBPE_Q6_M01868 TRANSFAC + 201916643 201916656 8.0E-06 TACGATTGCAACAG 14 V_GFI1_01_M00250 TRANSFAC + 201918831 201918854 2.0E-06 TAAAAGCAAATCACTACCTTCAGC 24 V_POLY_C_M00212 TRANSFAC + 201916352 201916369 0.0E+00 GAATAAATCCTTACTGTG 18 Hand1_Tcfe2a_MA0092.1 JASPAR + 201916656 201916665 1.0E-06 GGTCTGGCAT 10 V_ZBP89_Q4_M01816 TRANSFAC - 201910811 201910820 4.0E-06 CCCTCCCCCA 10 V_AP1_Q6_01_M00925 TRANSFAC + 201919065 201919073 7.0E-06 ATGACTCAG 9 V_HOXB9_01_M01426 TRANSFAC - 201915999 201916014 6.0E-06 GGAGTAGTAAAATACG 16 V_HNF3_Q6_M00791 TRANSFAC + 201911317 201911329 3.0E-06 CTCAACAAACAGA 13 V_IRF_Q6_M00772 TRANSFAC - 201916374 201916388 6.0E-06 CCAGTTTTCAGTTTT 15 V_IRF_Q6_M00772 TRANSFAC + 201918886 201918900 6.0E-06 GTGGTTTTCTTTTTT 15 V_TATA_C_M00216 TRANSFAC - 201915853 201915862 3.0E-06 TCTTTAAAAG 10 V_OCT1_04_M00138 TRANSFAC + 201911418 201911440 9.0E-06 AGATGATTATACAAAAGTCATGT 23 V_PITX3_01_M01343 TRANSFAC - 201910982 201910997 8.0E-06 CTGGGGATTAGCGCCT 16 V_IK2_01_M00087 TRANSFAC + 201916395 201916406 6.0E-06 GTTTGGGAAAGA 12 V_ZBRK1_01_M01105 TRANSFAC - 201916731 201916745 7.0E-06 GGGGGGCAGGGGATT 15 V_MEF2_04_M00233 TRANSFAC + 201918785 201918806 5.0E-06 CTTTTTGCCAAAAATATTCACT 22 V_CRX_02_M01436 TRANSFAC - 201910984 201910999 1.0E-05 GGCTGGGGATTAGCGC 16 V_PAX8_01_M00717 TRANSFAC - 201911312 201911326 4.0E-06 GTTTGTTGAGTGAAT 15 V_AP1_C_M00199 TRANSFAC + 201919065 201919073 6.0E-06 ATGACTCAG 9 V_SMAD4_Q6_M00733 TRANSFAC + 201911394 201911408 3.0E-06 GTGAGTGAGACAGCC 15 V_LMO2COM_01_M00277 TRANSFAC + 201915616 201915627 4.0E-06 CTACAGGTGCTG 12 V_OCT4_02_M01124 TRANSFAC + 201918750 201918764 2.0E-06 ATTCTCTTTCTAGTT 15 V_OCT1_B_M00342 TRANSFAC - 201911360 201911369 5.0E-06 AATGCAAATG 10 V_GLI3_Q5_01_M01657 TRANSFAC - 201916569 201916577 6.0E-06 GTGGGTGGT 9 V_OCT_Q6_M00795 TRANSFAC + 201911359 201911369 8.0E-06 GCATTTGCATT 11 V_AP1_Q4_01_M00926 TRANSFAC - 201919065 201919072 1.0E-05 TGAGTCAT 8 V_GFI1_Q6_M01067 TRANSFAC + 201916758 201916770 9.0E-06 CAAAATCCCTTCT 13 V_RARA_04_M02891 TRANSFAC + 201911256 201911271 1.0E-05 AAGCTGGGGTCAATTC 16 V_TAL1_01_M01591 TRANSFAC - 201916404 201916416 8.0E-06 GATCCTTCTCTCT 13 V_PKNOX2_01_M01411 TRANSFAC + 201916438 201916453 0.0E+00 AAAGGGCTGTCACTTT 16 V_MYOD_Q6_01_M00929 TRANSFAC + 201915613 201915630 9.0E-06 GTGCTACAGGTGCTGAAG 18 V_OCT2_01_M01368 TRANSFAC - 201911357 201911372 4.0E-06 CAAAATGCAAATGCAG 16 V_OCT1_Q6_M00195 TRANSFAC + 201918830 201918844 7.0E-06 CTAAAAGCAAATCAC 15 V_GFI1B_01_M01058 TRANSFAC + 201918837 201918848 1.0E-05 CAAATCACTACC 12 V_PARP_Q3_M01211 TRANSFAC + 201915878 201915887 8.0E-06 TGAGAAAAAG 10 V_FRA1_Q5_M01267 TRANSFAC - 201919065 201919072 1.0E-05 TGAGTCAT 8 V_DOBOX5_01_M01463 TRANSFAC - 201916350 201916366 2.0E-06 AGTAAGGATTTATTCTC 17 V_NRSF_01_M00256 TRANSFAC + 201918849 201918869 6.0E-06 TTCAGCCCCAGGGTTAGCCCT 21 V_OTX2_01_M01387 TRANSFAC - 201916350 201916366 3.0E-06 AGTAAGGATTTATTCTC 17 V_PBX1_02_M00124 TRANSFAC + 201916690 201916704 9.0E-06 CTCATCCATCATGCT 15 V_NFAT2_02_M01749 TRANSFAC - 201915798 201915808 1.0E-05 TTCCCTGGAAT 11 V_ZFP281_01_M01597 TRANSFAC + 201910811 201910821 1.0E-06 TGGGGGAGGGG 11 V_MEF3_B_M00319 TRANSFAC - 201911104 201911116 5.0E-06 GTCTCAGGTTTCA 13 V_IRF1_Q6_01_M01881 TRANSFAC - 201916373 201916386 2.0E-06 AGTTTTCAGTTTTG 14 V_ZFP281_04_M02831 TRANSFAC - 201910809 201910823 1.0E-06 GCCCCCTCCCCCATC 15 V_ZFP281_04_M02831 TRANSFAC + 201910937 201910951 1.0E-05 TCCTCCACCCCCACC 15 V_EWSR1FLI1_01_M02252 TRANSFAC - 201916810 201916827 2.0E-06 GGAAAGATGCCAGGAAAG 18 V_SOX18_04_M02905 TRANSFAC - 201915824 201915839 2.0E-06 GTACTAAATTTGGTCA 16 V_IRF1_01_M00062 TRANSFAC + 201916373 201916385 1.0E-06 CAAAACTGAAAAC 13 V_PITX2_01_M01447 TRANSFAC - 201916350 201916366 3.0E-06 AGTAAGGATTTATTCTC 17 V_HNF4_01_M00134 TRANSFAC - 201911361 201911379 9.0E-06 TGGAGGGCAAAATGCAAAT 19 V_OBOX5_01_M01381 TRANSFAC - 201916350 201916366 6.0E-06 AGTAAGGATTTATTCTC 17 V_BRF1_01_M01747 TRANSFAC + 201916482 201916494 2.0E-06 GGGTTCAAACCTC 13 V_STAT1_Q6_M01823 TRANSFAC + 201916608 201916617 8.0E-06 TTCAGGGAAA 10 V_OTX1_01_M01366 TRANSFAC - 201916350 201916366 2.0E-06 AGTAAGGATTTATTCTC 17 V_STAT1_05_M01260 TRANSFAC + 201916605 201916626 8.0E-06 GTCTTCAGGGAAACAGAATTCT 22 V_OBOX6_06_M03067 TRANSFAC + 201916350 201916366 6.0E-06 GAGAATAAATCCTTACT 17 V_DMRT5_01_M01150 TRANSFAC - 201915881 201915895 1.0E-06 TTTTGTATCTTTTTC 15 V_NF1_Q6_M00193 TRANSFAC - 201918780 201918797 0.0E+00 TTTTGGCAAAAAGCCTGA 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.