Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

GCA Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 25801 grancalcin, EF-hand calcium binding protein chr2 + 163195582 - 163201082 163200582 Transcription Factor Binding Sites   Download all TFBS in the GCA promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 163201188 163201204 8.0E-06 TCCTTATGAATAAATTA 17 POU3F3_POU_DBD_monomeric_12_1 SELEX + 163201193 163201204 0.0E+00 ATGAATAAATTA 12 EMX2_homeodomain_DBD_dimeric_14_1 SELEX + 163201191 163201204 8.0E-06 TTATGAATAAATTA 14 POU3F2_POU_DBD_monomeric_13_1 SELEX + 163201192 163201204 0.0E+00 TATGAATAAATTA 13 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 163200607 163200620 8.0E-06 GAACCCGCCCCCTT 14 STAT1_MA0137.2 JASPAR + 163201051 163201065 4.0E-06 TATTTCCTGGAATGG 15 STAT1_MA0137.2 JASPAR - 163201051 163201065 1.0E-06 CCATTCCAGGAAATA 15 NFYA_MA0060.1 JASPAR + 163200484 163200499 3.0E-06 TGTAGCCAATCAGGGC 16 NFYA_MA0060.1 JASPAR + 163200566 163200581 0.0E+00 CTCAGCCAATCGGAAC 16 HOMEZ_HOMEZ_DBD_monomer-or-dimer_12_1 SELEX - 163201093 163201104 8.0E-06 CAAACGATTACT 12 Pax4_MA0068.1 JASPAR - 163201025 163201054 0.0E+00 AATAAATTTCCAAACACACATTACTCCCTC 30 Pax4_MA0068.1 JASPAR - 163201026 163201055 0.0E+00 AAATAAATTTCCAAACACACATTACTCCCT 30 Pax4_MA0068.1 JASPAR - 163201285 163201314 1.0E-06 AAAAGTTATAACAAAGAGTAACTTCCCCCC 30 Klf4_MA0039.2 JASPAR + 163200505 163200514 5.0E-06 TGGGTGGGGC 10 POU6F2_POU_DBD_dimeric_16_1 SELEX + 163201190 163201205 5.0E-06 CTTATGAATAAATTAA 16 SP1_MA0079.2 JASPAR - 163200777 163200786 9.0E-06 CCCCTCCTCC 10 SP1_MA0079.2 JASPAR + 163201118 163201127 7.0E-06 CCCCGCCCCC 10 BCL6B_C2H2_DBD_monomeric_17_1 SELEX - 163200308 163200324 1.0E-06 TTCTTTCTAGAAACCCC 17 Lhx3_MA0135.1 JASPAR - 163201192 163201204 9.0E-06 TAATTTATTCATA 13 POU1F1_POU_DBD_monomeric_17_1 SELEX + 163201190 163201206 0.0E+00 CTTATGAATAAATTAAG 17 Stat3_MA0144.1 JASPAR - 163201053 163201062 1.0E-06 TTCCAGGAAA 10 POU3F1_POU_DBD_monomeric_12_2 SELEX + 163201193 163201204 0.0E+00 ATGAATAAATTA 12 FEV_MA0156.1 JASPAR - 163201052 163201059 1.0E-05 CAGGAAAT 8 FEV_MA0156.1 JASPAR - 163201159 163201166 1.0E-05 CAGGAAAT 8 Hltf_MA0109.1 JASPAR + 163201307 163201316 6.0E-06 TAACTTTTAT 10 Pou5f1_MA0142.1 JASPAR + 163199023 163199037 3.0E-06 GTTTGTTATGCAACT 15 FOXI1_forkhead_full_dimeric_17_1 SELEX + 163201205 163201221 1.0E-06 AGGTGTACGGTAAATAA 17 Sox2_MA0143.1 JASPAR + 163199022 163199036 8.0E-06 TGTTTGTTATGCAAC 15 POU4F1_POU_DBD_monomeric_14_1 SELEX + 163201193 163201206 2.0E-06 ATGAATAAATTAAG 14 V_ELF5_02_M01980 TRANSFAC - 163201051 163201060 3.0E-06 CCAGGAAATA 10 V_RUSH1A_02_M01107 TRANSFAC + 163201307 163201316 6.0E-06 TAACTTTTAT 10 V_NFAT_Q4_01_M00935 TRANSFAC + 163201042 163201051 7.0E-06 TTGGAAATTT 10 V_ELF5_03_M02057 TRANSFAC - 163201051 163201060 2.0E-06 CCAGGAAATA 10 V_MEQ_01_M02049 TRANSFAC - 163201034 163201042 2.0E-06 AACACACAT 9 V_FOXP1_01_M00987 TRANSFAC + 163201032 163201051 7.0E-06 TAATGTGTGTTTGGAAATTT 20 V_STAT5A_Q6_M01890 TRANSFAC + 163201050 163201062 5.0E-06 TTATTTCCTGGAA 13 V_TST1_02_M01316 TRANSFAC - 163201191 163201207 6.0E-06 CCTTAATTTATTCATAA 17 V_TST1_02_M01316 TRANSFAC + 163201192 163201208 3.0E-06 TATGAATAAATTAAGGT 17 V_BCL6_Q3_01_M02085 TRANSFAC + 163200311 163200320 4.0E-06 GTTTCTAGAA 10 V_BCL6_Q3_01_M02085 TRANSFAC - 163200313 163200322 0.0E+00 CTTTCTAGAA 10 V_POU3F3_01_M03090 TRANSFAC - 163201187 163201203 0.0E+00 AATTTATTCATAAGGAA 17 V_POU3F3_01_M03090 TRANSFAC + 163201188 163201204 4.0E-06 TCCTTATGAATAAATTA 17 V_OSF2_Q6_M00731 TRANSFAC - 163201101 163201108 1.0E-05 ACCACAAA 8 V_BCL6B_03_M02740 TRANSFAC - 163200308 163200323 3.0E-06 TCTTTCTAGAAACCCC 16 V_NFY_Q6_M00185 TRANSFAC + 163200486 163200496 1.0E-06 TAGCCAATCAG 11 V_CEBP_Q3_M00770 TRANSFAC + 163200222 163200233 1.0E-06 AAATTTTGAAAT 12 V_ZFX_01_M01593 TRANSFAC - 163200931 163200946 6.0E-06 GCCCAGGCCCTGGCCC 16 V_HMGIY_Q3_M01010 TRANSFAC + 163201041 163201055 1.0E-05 TTTGGAAATTTATTT 15 V_HMGIY_Q3_M01010 TRANSFAC + 163201153 163201167 2.0E-06 TTTTGAATTTCCTGA 15 V_MMEF2_Q6_M00405 TRANSFAC + 163200276 163200291 5.0E-06 CTGGTTAAAATAAGTC 16 V_STAT_Q6_M00777 TRANSFAC + 163201049 163201061 8.0E-06 TTTATTTCCTGGA 13 V_ESE1_01_M01977 TRANSFAC - 163201051 163201060 3.0E-06 CCAGGAAATA 10 V_POU5F1_02_M02245 TRANSFAC + 163199023 163199037 3.0E-06 GTTTGTTATGCAACT 15 V_AR_Q6_01_M01996 TRANSFAC + 163201168 163201182 7.0E-06 CCACTTCTTGTTCTT 15 V_MAFB_03_M02879 TRANSFAC + 163200214 163200228 1.0E-06 TAACTGCAAAATTTT 15 V_MAFB_03_M02879 TRANSFAC - 163200221 163200235 3.0E-06 GAATTTCAAAATTTT 15 V_OCTAMER_01_M01324 TRANSFAC - 163201187 163201203 0.0E+00 AATTTATTCATAAGGAA 17 V_OCTAMER_01_M01324 TRANSFAC + 163201188 163201204 4.0E-06 TCCTTATGAATAAATTA 17 V_CEBP_C_M00201 TRANSFAC + 163200221 163200238 1.0E-06 AAAATTTTGAAATTCACA 18 V_CEBP_C_M00201 TRANSFAC + 163201037 163201054 5.0E-06 TGTGTTTGGAAATTTATT 18 V_CEBP_01_M00159 TRANSFAC - 163200357 163200369 7.0E-06 TCTGTGGAAAGGT 13 V_CEBP_01_M00159 TRANSFAC + 163201039 163201051 1.0E-06 TGTTTGGAAATTT 13 V_POU1F1_Q6_M00744 TRANSFAC + 163201193 163201202 0.0E+00 ATGAATAAAT 10 V_STAT5B_01_M00459 TRANSFAC + 163201051 163201065 4.0E-06 TATTTCCTGGAATGG 15 V_STAT5B_01_M00459 TRANSFAC - 163201051 163201065 9.0E-06 CCATTCCAGGAAATA 15 V_SP1_03_M02281 TRANSFAC - 163200777 163200786 9.0E-06 CCCCTCCTCC 10 V_SP1_03_M02281 TRANSFAC + 163201118 163201127 7.0E-06 CCCCGCCCCC 10 V_HFH4_01_M00742 TRANSFAC + 163199019 163199031 4.0E-06 CTGTGTTTGTTAT 13 V_GKLF_02_M01588 TRANSFAC - 163200503 163200514 1.0E-06 GCCCCACCCATC 12 V_GKLF_02_M01588 TRANSFAC - 163200585 163200596 8.0E-06 GCCCCGCCCTGC 12 V_GKLF_02_M01588 TRANSFAC - 163200822 163200833 7.0E-06 GCCACACCCCGC 12 V_LHX3_01_M01471 TRANSFAC - 163201193 163201209 7.0E-06 CACCTTAATTTATTCAT 17 V_NFY_Q6_01_M00775 TRANSFAC + 163200483 163200495 7.0E-06 GTGTAGCCAATCA 13 V_NFY_Q6_01_M00775 TRANSFAC + 163200565 163200577 3.0E-06 ACTCAGCCAATCG 13 V_TCFAP2E_04_M02926 TRANSFAC + 163200313 163200326 5.0E-06 TTCTAGAAAGAAAA 14 V_CEBPB_01_M00109 TRANSFAC + 163200222 163200235 5.0E-06 AAATTTTGAAATTC 14 V_CEBPB_01_M00109 TRANSFAC + 163201038 163201051 7.0E-06 GTGTTTGGAAATTT 14 V_NKX62_Q2_M00489 TRANSFAC - 163201045 163201056 1.0E-05 GAAATAAATTTC 12 V_MEF2A_Q6_M02024 TRANSFAC - 163200278 163200287 8.0E-06 TATTTTAACC 10 V_PAX_Q6_M00808 TRANSFAC - 163200786 163200796 2.0E-06 CTGGGACTCAC 11 V_STAT4_Q4_M01666 TRANSFAC + 163200280 163200293 9.0E-06 TTAAAATAAGTCAC 14 V_STAT4_Q4_M01666 TRANSFAC - 163201049 163201062 3.0E-06 TTCCAGGAAATAAA 14 V_NFY_C_M00209 TRANSFAC - 163200484 163200497 0.0E+00 CCTGATTGGCTACA 14 V_ETS_Q4_M00771 TRANSFAC + 163201048 163201059 9.0E-06 ATTTATTTCCTG 12 V_FOXA2_02_M02853 TRANSFAC - 163201297 163201311 3.0E-06 AGTTATAACAAAGAG 15 V_POU3F2_01_M00463 TRANSFAC + 163201193 163201206 1.0E-06 ATGAATAAATTAAG 14 V_POU3F2_01_M00463 TRANSFAC - 163201193 163201206 1.0E-06 CTTAATTTATTCAT 14 V_POU3F2_01_M00463 TRANSFAC - 163201197 163201210 8.0E-06 ACACCTTAATTTAT 14 V_CEBPE_Q6_M01868 TRANSFAC - 163201040 163201053 4.0E-06 ATAAATTTCCAAAC 14 V_HNF3G_Q4_M02015 TRANSFAC + 163199022 163199029 7.0E-06 TGTTTGTT 8 V_SP4_03_M02810 TRANSFAC - 163200604 163200620 0.0E+00 GAACCCGCCCCCTTCCG 17 V_KROX_Q6_M00982 TRANSFAC + 163201113 163201126 4.0E-06 CCCTCCCCCGCCCC 14 V_AMEF2_Q6_M00403 TRANSFAC + 163200276 163200293 1.0E-06 CTGGTTAAAATAAGTCAC 18 V_IK1_01_M00086 TRANSFAC + 163200370 163200382 7.0E-06 GAGTGGGAATTCC 13 V_MAZ_Q6_01_M02023 TRANSFAC - 163201108 163201121 1.0E-06 GGGGGAGGGAAGTA 14 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 163199022 163199032 8.0E-06 TGTTTGTTATG 11 V_STAT5A_02_M00460 TRANSFAC - 163201039 163201062 0.0E+00 TTCCAGGAAATAAATTTCCAAACA 24 V_SOX_Q6_M01014 TRANSFAC + 163201297 163201309 0.0E+00 CTCTTTGTTATAA 13 V_EHF_02_M01974 TRANSFAC - 163201051 163201060 3.0E-06 CCAGGAAATA 10 V_ELF5_01_M01197 TRANSFAC - 163201184 163201194 8.0E-06 ATAAGGAACTT 11 V_OCT1_04_M00138 TRANSFAC + 163200209 163200231 3.0E-06 AAATGTAACTGCAAAATTTTGAA 23 V_UNCX4.1_01_M01458 TRANSFAC + 163201193 163201209 9.0E-06 ATGAATAAATTAAGGTG 17 V_SP1SP3_Q4_M01219 TRANSFAC - 163200606 163200616 4.0E-06 CCGCCCCCTTC 11 V_PIT1_01_M01465 TRANSFAC + 163201192 163201208 3.0E-06 TATGAATAAATTAAGGT 17 V_STAT4_Q5_M02117 TRANSFAC - 163201053 163201062 7.0E-06 TTCCAGGAAA 10 V_POU6F1_01_M00465 TRANSFAC - 163201197 163201207 6.0E-06 CCTTAATTTAT 11 V_PMX2B_01_M01356 TRANSFAC + 163201193 163201209 5.0E-06 ATGAATAAATTAAGGTG 17 V_STAT3_03_M01595 TRANSFAC - 163201049 163201064 3.0E-06 CATTCCAGGAAATAAA 16 V_STAT3_03_M01595 TRANSFAC + 163201052 163201067 4.0E-06 ATTTCCTGGAATGGAG 16 V_SOX11_03_M02795 TRANSFAC - 163201294 163201310 2.0E-06 GTTATAACAAAGAGTAA 17 V_GR_Q6_02_M01836 TRANSFAC + 163201171 163201183 7.0E-06 CTTCTTGTTCTTT 13 V_SP4_Q5_M01273 TRANSFAC + 163201117 163201127 5.0E-06 CCCCCGCCCCC 11 V_EHF_03_M02052 TRANSFAC - 163201051 163201060 7.0E-06 CCAGGAAATA 10 V_CAAT_01_M00254 TRANSFAC + 163200484 163200495 0.0E+00 TGTAGCCAATCA 12 V_ALPHACP1_01_M00687 TRANSFAC + 163200486 163200496 3.0E-06 TAGCCAATCAG 11 V_BRN4_01_M01473 TRANSFAC + 163201192 163201208 3.0E-06 TATGAATAAATTAAGGT 17 V_FOXL1_02_M02857 TRANSFAC - 163201297 163201312 5.0E-06 AAGTTATAACAAAGAG 16 V_DMRT7_01_M01151 TRANSFAC + 163201301 163201314 2.0E-06 TTGTTATAACTTTT 14 V_NFY_01_M00287 TRANSFAC + 163200484 163200499 4.0E-06 TGTAGCCAATCAGGGC 16 V_NFY_01_M00287 TRANSFAC + 163200566 163200581 0.0E+00 CTCAGCCAATCGGAAC 16 V_FPM315_01_M01587 TRANSFAC - 163200874 163200885 6.0E-06 CAGGGAGCAGGA 12 V_ESE1_02_M02055 TRANSFAC - 163201051 163201060 3.0E-06 CCAGGAAATA 10 V_STAT5A_01_M00457 TRANSFAC - 163201051 163201065 3.0E-06 CCATTCCAGGAAATA 15 V_SOX2_01_M02246 TRANSFAC + 163199022 163199036 8.0E-06 TGTTTGTTATGCAAC 15 V_SOX2_Q6_M01272 TRANSFAC + 163201294 163201309 4.0E-06 TTACTCTTTGTTATAA 16 V_SOX12_03_M02796 TRANSFAC + 163201298 163201311 1.0E-05 TCTTTGTTATAACT 14 V_SP1_Q2_01_M00933 TRANSFAC + 163201118 163201127 4.0E-06 CCCCGCCCCC 10 V_UF1H3BETA_Q6_M01068 TRANSFAC - 163201111 163201124 6.0E-06 GGCGGGGGAGGGAA 14 V_CEBP_Q2_01_M00912 TRANSFAC - 163200222 163200233 1.0E-06 ATTTCAAAATTT 12 V_NFYA_Q5_M02106 TRANSFAC + 163200486 163200499 0.0E+00 TAGCCAATCAGGGC 14 V_NFYA_Q5_M02106 TRANSFAC + 163200568 163200581 0.0E+00 CAGCCAATCGGAAC 14 V_FEV_01_M02269 TRANSFAC - 163201052 163201059 1.0E-05 CAGGAAAT 8 V_FEV_01_M02269 TRANSFAC - 163201159 163201166 1.0E-05 CAGGAAAT 8 V_STAT1_Q6_M01823 TRANSFAC - 163201053 163201062 2.0E-06 TTCCAGGAAA 10 V_GLIS2_04_M02863 TRANSFAC + 163201190 163201203 1.0E-05 CTTATGAATAAATT 14 V_STAT1_05_M01260 TRANSFAC - 163201044 163201065 1.0E-06 CCATTCCAGGAAATAAATTTCC 22 V_STAT1_05_M01260 TRANSFAC + 163201051 163201072 6.0E-06 TATTTCCTGGAATGGAGGAACA 22 V_PAX4_04_M00380 TRANSFAC - 163201024 163201053 6.0E-06 ATAAATTTCCAAACACACATTACTCCCTCG 30 V_PAX4_04_M00380 TRANSFAC - 163201028 163201057 0.0E+00 GGAAATAAATTTCCAAACACACATTACTCC 30 V_PAX4_04_M00380 TRANSFAC - 163201285 163201314 1.0E-06 AAAAGTTATAACAAAGAGTAACTTCCCCCC 30 V_CEBPA_Q6_M01866 TRANSFAC + 163200222 163200234 3.0E-06 AAATTTTGAAATT 13 V_ESE1_Q3_M01214 TRANSFAC - 163201051 163201060 3.0E-06 CCAGGAAATA 10 V_OCT4_01_M01125 TRANSFAC + 163199023 163199037 9.0E-06 GTTTGTTATGCAACT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.