Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RAD54B Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 25788 RAD54 homolog B (S. cerevisiae) chr8 - 95486843 - 95492343 95487343 Transcription Factor Binding Sites   Download all TFBS in the RAD54B promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 95485607 95485624 6.0E-06 AATATAAATGTGGACTGA 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 95485607 95485624 6.0E-06 TCAGTCCACATTTATATT 18 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 95485572 95485584 3.0E-06 GTAAATAAGAACA 13 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX + 95487570 95487579 5.0E-06 GTAATAAATA 10 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX + 95487570 95487579 9.0E-06 GTAATAAATA 10 SOX10_HMG_full_dimeric_15_3 SELEX + 95485482 95485496 5.0E-06 ATTAGTTTCAGTCCT 15 ALX3_homeodomain_full_monomeric_10_1 SELEX + 95487484 95487493 2.0E-06 TTCAATTAAA 10 Pax6_MA0069.1 JASPAR + 95487477 95487490 1.0E-06 TTTACGGTTCAATT 14 EMX2_homeodomain_DBD_dimeric_14_1 SELEX + 95487486 95487499 5.0E-06 CAATTAAAAAAATA 14 En1_MA0027.1 JASPAR - 95485580 95485590 2.0E-06 AAGTTGTGTTC 11 TBX1_TBX_DBD_dimeric_23_1 SELEX - 95487837 95487859 4.0E-06 CCTAGCACTTAGAAGGTGCTCAG 23 ZNF435_C2H2_full_dimeric_18_1 SELEX + 95487829 95487846 0.0E+00 AGTATTTACTGAGCACCT 18 Alx1_homeodomain_DBD_monomeric_10_1 SELEX + 95487484 95487493 6.0E-06 TTCAATTAAA 10 EWSR1-FLI1_MA0149.1 JASPAR - 95487116 95487133 1.0E-06 GGAGGGAGGGAAGGCGGC 18 EWSR1-FLI1_MA0149.1 JASPAR - 95487120 95487137 0.0E+00 GGGAGGAGGGAGGGAAGG 18 Esrrb_MA0141.1 JASPAR - 95485240 95485251 2.0E-06 TGCCCAAGGTCA 12 NFYA_MA0060.1 JASPAR - 95487635 95487650 9.0E-06 AATAACCAATAGGATA 16 HMX3_homeodomain_DBD_monomeric_11_1 SELEX + 95487484 95487494 7.0E-06 TTCAATTAAAA 11 Esrra_nuclearreceptor_DBD_dimeric_17_1 SELEX - 95485240 95485256 8.0E-06 ATGGATGCCCAAGGTCA 17 HOXC11_homeodomain_full_monomeric_11_2 SELEX + 95487569 95487579 4.0E-06 AGTAATAAATA 11 ATF4_bZIP_DBD_dimeric_13_1 SELEX - 95487812 95487824 1.0E-05 GAATGATGTAACT 13 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX - 95485239 95485248 4.0E-06 CCAAGGTCAT 10 SOX9_HMG_full_dimeric_16_3 SELEX - 95485600 95485615 9.0E-06 ATTTATATTCAGGCAT 16 MIXL1_homeodomain_full_monomeric_10_1 SELEX + 95487484 95487493 3.0E-06 TTCAATTAAA 10 PBX1_MA0070.1 JASPAR + 95487816 95487827 3.0E-06 ACATCATTCAAT 12 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX - 95485239 95485249 5.0E-06 CCCAAGGTCAT 11 Myf_MA0055.1 JASPAR - 95485998 95486009 3.0E-06 CAGCAACAGCAG 12 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX - 95485238 95485248 1.0E-06 CCAAGGTCATA 11 EMX1_homeodomain_DBD_dimeric_14_1 SELEX + 95487486 95487499 7.0E-06 CAATTAAAAAAATA 14 NRF1_NRF_full_dimeric_12_1 SELEX + 95487352 95487363 8.0E-06 CGCGCGTGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 95487352 95487363 7.0E-06 TGCGCACGCGCG 12 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 95485572 95485584 3.0E-06 GTAAATAAGAACA 13 NFIA_NFI_full_monomeric_10_1 SELEX - 95485554 95485563 2.0E-06 AGTGCCAAGT 10 TGIF1_MEIS_DBD_dimeric_12_1 SELEX + 95485522 95485533 9.0E-06 TGACAACTGTAA 12 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX + 95487569 95487579 3.0E-06 AGTAATAAATA 11 HMX1_homeodomain_DBD_monomeric_11_1 SELEX + 95487484 95487494 8.0E-06 TTCAATTAAAA 11 V_HOXA9_01_M01351 TRANSFAC + 95487482 95487498 9.0E-06 GGTTCAATTAAAAAAAT 17 V_AR_02_M00953 TRANSFAC - 95485573 95485599 9.0E-06 TTGCTTTCAAAGTTGTGTTCTTATTTA 27 V_NFY_Q6_M00185 TRANSFAC - 95487638 95487648 8.0E-06 TAACCAATAGG 11 V_BCL6_01_M01183 TRANSFAC - 95487785 95487800 7.0E-06 CATGCTTTAATGCTTT 16 V_LRH1_Q5_01_M02098 TRANSFAC - 95485240 95485250 9.0E-06 GCCCAAGGTCA 11 V_SPDEF_04_M02915 TRANSFAC + 95487630 95487645 3.0E-06 TACGATATCCTATTGG 16 V_HOXC4_01_M01369 TRANSFAC + 95487481 95487497 6.0E-06 CGGTTCAATTAAAAAAA 17 V_HOXC6_01_M01406 TRANSFAC - 95487565 95487581 6.0E-06 CGTATTTATTACTTATC 17 V_TCFAP2E_04_M02926 TRANSFAC + 95487486 95487499 1.0E-06 CAATTAAAAAAATA 14 V_HBP1_Q2_M01661 TRANSFAC + 95487822 95487830 8.0E-06 TTCAATGAG 9 V_NKX62_Q2_M00489 TRANSFAC + 95487570 95487581 1.0E-06 GTAATAAATACG 12 V_TCFAP2C_04_M02925 TRANSFAC - 95485239 95485252 2.0E-06 ATGCCCAAGGTCAT 14 V_ELF4_04_M02850 TRANSFAC + 95487482 95487498 1.0E-05 GGTTCAATTAAAAAAAT 17 V_ELF4_04_M02850 TRANSFAC + 95487483 95487499 0.0E+00 GTTCAATTAAAAAAATA 17 V_ELF4_04_M02850 TRANSFAC + 95487484 95487500 7.0E-06 TTCAATTAAAAAAATAC 17 V_TST1_01_M00133 TRANSFAC - 95485525 95485539 5.0E-06 GGTGTATTACAGTTG 15 V_MYF_01_M01302 TRANSFAC - 95485998 95486009 3.0E-06 CAGCAACAGCAG 12 V_FREAC3_01_M00291 TRANSFAC - 95487827 95487842 2.0E-06 GCTCAGTAAATACTCA 16 V_LMX1_01_M01409 TRANSFAC + 95487481 95487497 1.0E-06 CGGTTCAATTAAAAAAA 17 V_PR_01_M00954 TRANSFAC - 95485573 95485599 5.0E-06 TTGCTTTCAAAGTTGTGTTCTTATTTA 27 V_ZFP105_03_M02827 TRANSFAC + 95487484 95487498 1.0E-06 TTCAATTAAAAAAAT 15 V_E4BP4_01_M00045 TRANSFAC - 95487812 95487823 8.0E-06 AATGATGTAACT 12 V_NKX61_01_M00424 TRANSFAC - 95487483 95487495 1.0E-06 TTTTTAATTGAAC 13 V_SIX3_01_M01358 TRANSFAC - 95487627 95487643 9.0E-06 AATAGGATATCGTATAC 17 V_MAZ_Q6_01_M02023 TRANSFAC - 95487123 95487136 3.0E-06 GGAGGAGGGAGGGA 14 V_OCT1_05_M00161 TRANSFAC - 95485504 95485517 1.0E-05 GGCCTTACCATTTT 14 V_GR_01_M00955 TRANSFAC - 95485573 95485599 6.0E-06 TTGCTTTCAAAGTTGTGTTCTTATTTA 27 V_HBP1_03_M02762 TRANSFAC + 95487819 95487834 6.0E-06 TCATTCAATGAGTATT 16 V_DAX1_01_M01248 TRANSFAC - 95485234 95485253 1.0E-06 GATGCCCAAGGTCATATGTA 20 V_NCX_02_M01420 TRANSFAC + 95487482 95487498 9.0E-06 GGTTCAATTAAAAAAAT 17 V_ARID3A_04_M02735 TRANSFAC + 95487481 95487497 1.0E-06 CGGTTCAATTAAAAAAA 17 V_ISGF3G_03_M02771 TRANSFAC - 95485483 95485497 9.0E-06 AAGGACTGAAACTAA 15 V_TBP_06_M02814 TRANSFAC + 95487484 95487499 3.0E-06 TTCAATTAAAAAAATA 16 V_LIM1_01_M01418 TRANSFAC + 95487481 95487497 1.0E-06 CGGTTCAATTAAAAAAA 17 V_SOX17_04_M02904 TRANSFAC - 95485599 95485615 1.0E-05 ATTTATATTCAGGCATT 17 V_HOXD9_Q2_M01834 TRANSFAC + 95487786 95487795 8.0E-06 AAGCATTAAA 10 V_SF1_Q6_01_M01132 TRANSFAC + 95485240 95485248 7.0E-06 TGACCTTGG 9 V_VBP_01_M00228 TRANSFAC + 95487813 95487822 2.0E-06 GTTACATCAT 10 V_HOXA7_02_M01336 TRANSFAC - 95487565 95487581 7.0E-06 CGTATTTATTACTTATC 17 V_MTF1_06_M02882 TRANSFAC + 95485574 95485587 1.0E-05 AAATAAGAACACAA 14 V_MTF1_06_M02882 TRANSFAC + 95487486 95487499 4.0E-06 CAATTAAAAAAATA 14 V_MTF1_06_M02882 TRANSFAC + 95487487 95487500 5.0E-06 AATTAAAAAAATAC 14 V_NFYC_Q5_M02107 TRANSFAC - 95487397 95487410 2.0E-06 CGTCCAATCAGAGT 14 V_OSR2_04_M02889 TRANSFAC + 95485224 95485239 5.0E-06 CTCTGCTACTTACATA 16 V_ERR1_Q2_M00511 TRANSFAC - 95485238 95485251 7.0E-06 TGCCCAAGGTCATA 14 V_ERR2_01_M01589 TRANSFAC - 95485237 95485248 9.0E-06 CCAAGGTCATAT 12 V_AIRE_01_M00999 TRANSFAC - 95485959 95485984 2.0E-06 CTGGTTCTTGGTAGAGTTGGTGTACT 26 V_ZFP206_01_M01742 TRANSFAC - 95486924 95486934 5.0E-06 TGCGCAGGCTC 11 V_ZFP206_01_M01742 TRANSFAC - 95487353 95487363 3.0E-06 TGCGCACGCGC 11 V_NFY_01_M00287 TRANSFAC - 95487397 95487412 6.0E-06 GTCGTCCAATCAGAGT 16 V_NKX22_01_M00485 TRANSFAC + 95485548 95485557 9.0E-06 ACAAGTACTT 10 V_FPM315_01_M01587 TRANSFAC - 95487128 95487139 0.0E+00 GAGGGAGGAGGG 12 V_NRF1_Q6_M00652 TRANSFAC + 95487354 95487363 6.0E-06 CGCGTGCGCA 10 V_PLZF_02_M01075 TRANSFAC + 95487780 95487808 4.0E-06 TTGGAAAAGCATTAAAGCATGTTAAGTAG 29 V_ESRRA_03_M02748 TRANSFAC - 95485235 95485251 2.0E-06 TGCCCAAGGTCATATGT 17 V_EWSR1FLI1_01_M02252 TRANSFAC - 95487116 95487133 1.0E-06 GGAGGGAGGGAAGGCGGC 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 95487120 95487137 0.0E+00 GGGAGGAGGGAGGGAAGG 18 V_HLF_01_M00260 TRANSFAC + 95487813 95487822 5.0E-06 GTTACATCAT 10 V_PR_02_M00957 TRANSFAC - 95485573 95485599 1.0E-05 TTGCTTTCAAAGTTGTGTTCTTATTTA 27 V_DR3_Q4_M00966 TRANSFAC + 95487407 95487427 8.0E-06 GACGACCCTACTGCATCACTG 21 V_LHX5_01_M01353 TRANSFAC + 95487481 95487497 7.0E-06 CGGTTCAATTAAAAAAA 17 V_HMX3_02_M01413 TRANSFAC + 95487481 95487497 9.0E-06 CGGTTCAATTAAAAAAA 17 V_NFYA_Q5_M02106 TRANSFAC - 95487397 95487410 6.0E-06 CGTCCAATCAGAGT 14 V_HOXD10_01_M01375 TRANSFAC + 95487482 95487498 2.0E-06 GGTTCAATTAAAAAAAT 17 V_TAACC_B_M00331 TRANSFAC + 95485531 95485553 9.0E-06 TAATACACCAGATAGCCACAAGT 23 V_ARID5A_04_M02840 TRANSFAC + 95487571 95487587 2.0E-06 TAATAAATACGGTATGA 17 V_PAX6_01_M00097 TRANSFAC + 95487473 95487493 0.0E+00 CAAGTTTACGGTTCAATTAAA 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.