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CCDC96 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 257236 coiled-coil domain containing 96 chr4 - 7044228 - 7049728 7044728 Transcription Factor Binding Sites   Download all TFBS in the CCDC96 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 7045017 7045035 8.0E-06 CGTCCGCAAGGTGGCGCCC 19 SP3_C2H2_DBD_monomeric_11_1 SELEX - 7044880 7044890 1.0E-05 GCCACGCCCCT 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 7044880 7044890 7.0E-06 GCCACGCCCCT 11 NHLH1_MA0048.1 JASPAR - 7045529 7045540 1.0E-05 CAGCAGCTGCTC 12 PAX5_PAX_DBD_monomeric_18_1 SELEX - 7047867 7047884 5.0E-06 GGTCACGGGCCAGTGCAC 18 EWSR1-FLI1_MA0149.1 JASPAR - 7044249 7044266 6.0E-06 GAGGGGAAGGAAGTCAGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 7044253 7044270 3.0E-06 GGCAGAGGGGAAGGAAGT 18 GLI2_C2H2_DBD_monomeric_14_1 SELEX + 7047881 7047894 9.0E-06 GACCACCCACCCCC 14 Esrrb_MA0141.1 JASPAR + 7045771 7045782 4.0E-06 CGCCCAAGGTCA 12 PAX2_PAX_DBD_monomeric_18_1 SELEX - 7047867 7047884 6.0E-06 GGTCACGGGCCAGTGCAC 18 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 7045530 7045539 2.0E-06 AGCAGCTGCT 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 7045530 7045539 2.0E-06 AGCAGCTGCT 10 SRY_MA0084.1 JASPAR + 7047638 7047646 7.0E-06 TAAAACAAT 9 NFATC1_NFAT_full_dimeric_20_1 SELEX - 7047637 7047656 7.0E-06 TTCGGAAAGTATTGTTTTAG 20 CTCF_C2H2_full_monomeric_17_1 SELEX - 7045018 7045034 1.0E-06 GGCGCCACCTTGCGGAC 17 YY2_C2H2_full_monomeric_11_1 SELEX - 7045304 7045314 2.0E-06 TCCGCCATCTT 11 Stat3_MA0144.1 JASPAR + 7043670 7043679 1.0E-05 TGCCTGGAAG 10 Myf_MA0055.1 JASPAR + 7045529 7045540 1.0E-05 GAGCAGCTGCTG 12 Myf_MA0055.1 JASPAR - 7045532 7045543 2.0E-06 CAGCAGCAGCTG 12 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX + 7045774 7045784 6.0E-06 CCAAGGTCACA 11 NR3C1_MA0113.1 JASPAR - 7047964 7047981 4.0E-06 AGAAAAATAAAGTCCCGG 18 PLAG1_MA0163.1 JASPAR - 7045683 7045696 3.0E-06 GGGGCCTTCTGGGG 14 NHLH1_bHLH_full_dimeric_10_1 SELEX + 7045530 7045539 7.0E-06 AGCAGCTGCT 10 NHLH1_bHLH_full_dimeric_10_1 SELEX - 7045530 7045539 7.0E-06 AGCAGCTGCT 10 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 7047577 7047589 7.0E-06 GGGAACAAAAACA 13 RORA_2_MA0072.1 JASPAR + 7048307 7048320 6.0E-06 GCAATGTGGGTCAG 14 Zfx_MA0146.1 JASPAR + 7044457 7044470 0.0E+00 GGGGCCTCGGCCTG 14 V_MTF1_01_M01242 TRANSFAC - 7045018 7045037 5.0E-06 GCGGGCGCCACCTTGCGGAC 20 V_ZSCAN4_03_M02838 TRANSFAC - 7047656 7047672 3.0E-06 TCTGTGTGCACATTCGT 17 V_ZSCAN4_03_M02838 TRANSFAC + 7047657 7047673 2.0E-06 CGAATGTGCACACAGAG 17 V_ZSCAN4_03_M02838 TRANSFAC - 7048039 7048055 8.0E-06 GCTCTGTGCACATAGCT 17 V_MAFK_03_M02776 TRANSFAC + 7047689 7047703 7.0E-06 TGAAAATGCAGATTC 15 TAL1_TCF3_MA0091.1 JASPAR - 7045458 7045469 8.0E-06 CCACCAGCTGGT 12 V_ZFX_01_M01593 TRANSFAC - 7044458 7044473 3.0E-06 GAGCAGGCCGAGGCCC 16 V_LRH1_Q5_01_M02098 TRANSFAC - 7044575 7044585 7.0E-06 GATCAAGGCCA 11 V_LRH1_Q5_01_M02098 TRANSFAC + 7045772 7045782 9.0E-06 GCCCAAGGTCA 11 V_GM397_03_M02760 TRANSFAC - 7047656 7047672 2.0E-06 TCTGTGTGCACATTCGT 17 V_SOX5_01_M00042 TRANSFAC + 7047639 7047648 9.0E-06 AAAACAATAC 10 V_FOXJ2_02_M00423 TRANSFAC + 7047639 7047652 2.0E-06 AAAACAATACTTTC 14 V_GABP_B_M00341 TRANSFAC - 7045362 7045373 4.0E-06 AGCGGAAGCGCA 12 V_SP1_Q6_01_M00931 TRANSFAC + 7044936 7044945 4.0E-06 GGGGCGGGGC 10 V_SRY_02_M00160 TRANSFAC + 7047638 7047649 3.0E-06 TAAAACAATACT 12 V_GLI1_Q2_M01042 TRANSFAC + 7047881 7047890 4.0E-06 GACCACCCAC 10 V_AP4_Q6_M00176 TRANSFAC + 7047707 7047716 2.0E-06 CTCAGCTGGT 10 V_GLI1_01_M01702 TRANSFAC + 7047881 7047891 3.0E-06 GACCACCCACC 11 V_CEBP_Q2_M00190 TRANSFAC - 7048300 7048313 1.0E-06 ACATTGCTTAATGC 14 V_RFX4_03_M02789 TRANSFAC + 7048131 7048145 8.0E-06 CTTCCTAGCAACCCT 15 V_AP2_Q6_01_M00915 TRANSFAC - 7044931 7044943 6.0E-06 CCCGCCCCAGGCC 13 V_NFAT2_01_M01748 TRANSFAC + 7047549 7047557 8.0E-06 GTGGAAAAT 9 V_NR3C1_01_M02219 TRANSFAC - 7047964 7047981 4.0E-06 AGAAAAATAAAGTCCCGG 18 V_CEBPB_01_M00109 TRANSFAC + 7048300 7048313 5.0E-06 GCATTAAGCAATGT 14 V_WT1_Q6_01_M02036 TRANSFAC + 7044288 7044297 4.0E-06 CGCCCCCGCC 10 V_WT1_Q6_01_M02036 TRANSFAC + 7044890 7044899 4.0E-06 CGCCCCCGCC 10 V_GLI3_02_M01704 TRANSFAC + 7047881 7047891 4.0E-06 GACCACCCACC 11 V_SOX13_03_M02797 TRANSFAC + 7047636 7047651 1.0E-06 TCTAAAACAATACTTT 16 V_SOX7_03_M02807 TRANSFAC + 7047634 7047655 3.0E-06 CTTCTAAAACAATACTTTCCGA 22 V_MYF_01_M01302 TRANSFAC + 7045529 7045540 1.0E-05 GAGCAGCTGCTG 12 V_MYF_01_M01302 TRANSFAC - 7045532 7045543 2.0E-06 CAGCAGCAGCTG 12 V_ZIC3_01_M00450 TRANSFAC - 7047881 7047889 6.0E-06 TGGGTGGTC 9 V_SOX8_04_M02912 TRANSFAC + 7048221 7048234 3.0E-06 GCATTCATGTGATA 14 V_KROX_Q6_M00982 TRANSFAC + 7044286 7044299 1.0E-06 TCCGCCCCCGCCTC 14 V_KROX_Q6_M00982 TRANSFAC + 7044292 7044305 1.0E-05 CCCGCCTCCGCCTC 14 V_AMEF2_Q6_M00403 TRANSFAC - 7048069 7048086 3.0E-06 GAGGCTAAATATGCCAAA 18 V_MAZ_Q6_01_M02023 TRANSFAC + 7045697 7045710 1.0E-06 GGAGGTGGGGAGGG 14 V_EGR1_Q6_M01873 TRANSFAC - 7044287 7044296 4.0E-06 GCGGGGGCGG 10 V_LXR_DR4_Q3_M00766 TRANSFAC - 7045721 7045736 3.0E-06 TGCCCGACTATAAACC 16 V_TTF1_Q6_M00794 TRANSFAC - 7043660 7043671 7.0E-06 CACTCAAGAAGC 12 V_MATH1_Q2_M01716 TRANSFAC + 7045459 7045468 3.0E-06 CCAGCTGGTG 10 V_SOX18_03_M02801 TRANSFAC - 7047635 7047650 1.0E-06 AAGTATTGTTTTAGAA 16 V_ASCL2_03_M02737 TRANSFAC - 7045526 7045542 1.0E-06 AGCAGCAGCTGCTCCTC 17 V_ASCL2_03_M02737 TRANSFAC + 7045527 7045543 2.0E-06 AGGAGCAGCTGCTGCTG 17 V_YY1_Q6_02_M01035 TRANSFAC - 7045304 7045314 7.0E-06 TCCGCCATCTT 11 V_PAX6_Q2_M00979 TRANSFAC - 7045379 7045392 4.0E-06 ATGTCCTGGCACTC 14 V_REX1_03_M01744 TRANSFAC + 7045304 7045315 6.0E-06 AAGATGGCGGAG 12 V_AP4_Q5_M00175 TRANSFAC + 7047707 7047716 1.0E-06 CTCAGCTGGT 10 V_ZIC1_01_M00448 TRANSFAC - 7047881 7047889 6.0E-06 TGGGTGGTC 9 V_MAFK_Q3_M02022 TRANSFAC + 7047704 7047714 6.0E-06 TGACTCAGCTG 11 V_HIC1_02_M01072 TRANSFAC + 7044791 7044805 6.0E-06 CCCCGCTGCCCGGCG 15 V_LMO2COM_01_M00277 TRANSFAC - 7047671 7047682 6.0E-06 CCCCAGGTGCTC 12 V_CTCF_01_M01200 TRANSFAC + 7045016 7045035 7.0E-06 GCGTCCGCAAGGTGGCGCCC 20 V_GLI3_Q5_01_M01657 TRANSFAC - 7047882 7047890 6.0E-06 GTGGGTGGT 9 V_SOX17_04_M02904 TRANSFAC + 7048217 7048233 5.0E-06 CATGGCATTCATGTGAT 17 V_MAF_Q6_01_M00983 TRANSFAC - 7047703 7047713 5.0E-06 AGCTGAGTCAG 11 V_SF1_Q6_01_M01132 TRANSFAC - 7045774 7045782 7.0E-06 TGACCTTGG 9 V_GLI3_01_M01596 TRANSFAC - 7047880 7047890 4.0E-06 GTGGGTGGTCA 11 V_GLI2_01_M01703 TRANSFAC + 7047881 7047891 3.0E-06 GACCACCCACC 11 V_AP4_01_M00005 TRANSFAC - 7044564 7044581 3.0E-06 AAGGCCAGCTCTGGCCCT 18 V_ERR2_01_M01589 TRANSFAC + 7045774 7045785 2.0E-06 CCAAGGTCACAC 12 V_ZFP206_01_M01742 TRANSFAC - 7044991 7045001 8.0E-06 TGCGCCTGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 7045041 7045051 4.0E-06 CGCGCAGGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 7045104 7045114 8.0E-06 TACGCAGGCGC 11 V_FPM315_01_M01587 TRANSFAC - 7044508 7044519 3.0E-06 GGAGGAGGAGGA 12 V_FPM315_01_M01587 TRANSFAC - 7044511 7044522 3.0E-06 GGAGGAGGAGGA 12 V_FPM315_01_M01587 TRANSFAC - 7044514 7044525 3.0E-06 GGAGGAGGAGGA 12 V_FOX_Q2_M00809 TRANSFAC - 7047553 7047565 9.0E-06 TTCTGTGTATTTT 13 V_SOX8_03_M02808 TRANSFAC - 7047636 7047652 3.0E-06 GAAAGTATTGTTTTAGA 17 V_PBX_Q3_M00998 TRANSFAC + 7044846 7044857 7.0E-06 GATTGATTGGAA 12 V_EWSR1FLI1_01_M02252 TRANSFAC - 7044249 7044266 6.0E-06 GAGGGGAAGGAAGTCAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 7044253 7044270 3.0E-06 GGCAGAGGGGAAGGAAGT 18 V_TFE_Q6_M01029 TRANSFAC + 7048225 7048232 1.0E-05 TCATGTGA 8 V_NFYA_Q5_M02106 TRANSFAC + 7044811 7044824 1.0E-05 AAGCCAATGGGAGG 14 V_ZID_01_M00085 TRANSFAC - 7048228 7048240 1.0E-06 TGGCTCTATCACA 13 V_RNF96_01_M01199 TRANSFAC + 7044426 7044435 7.0E-06 GCCCGCAGCC 10 V_ZIC2_01_M00449 TRANSFAC - 7047881 7047889 6.0E-06 TGGGTGGTC 9 V_BRCA_01_M01082 TRANSFAC - 7044725 7044732 1.0E-05 TTCTGTTG 8 V_AR_Q2_M00447 TRANSFAC - 7045326 7045340 2.0E-06 AGTACACGCAGTACT 15 V_RFX1_02_M00281 TRANSFAC + 7046268 7046285 5.0E-06 CACTTACGCTAGCAACAT 18 V_RORA2_01_M00157 TRANSFAC + 7048308 7048320 5.0E-06 CAATGTGGGTCAG 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.