Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ZNF549 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 256051 zinc finger protein 549 chr19 + 58033692 - 58039192 58038692 Transcription Factor Binding Sites   Download all TFBS in the ZNF549 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints ELK1_MA0028.1 JASPAR - 58038761 58038770 5.0E-06 GAGCCGGAAA 10 ELK1_MA0028.1 JASPAR + 58038794 58038803 5.0E-06 GAGCCGGAAA 10 REST_MA0138.2 JASPAR - 58038993 58039013 8.0E-06 CTCAGGACCCAGGTGAGGATC 21 Zfx_MA0146.1 JASPAR - 58038917 58038930 8.0E-06 CGGGGCGGGGCCTG 14 V_AP1_Q2_M00173 TRANSFAC + 58039776 58039786 1.0E-06 ACTGACTCAGT 11 V_BCL6B_03_M02740 TRANSFAC + 58038548 58038563 6.0E-06 TCTTTCTTGGATTGAG 16 V_SP1_Q6_01_M00931 TRANSFAC - 58038920 58038929 4.0E-06 GGGGCGGGGC 10 V_EAR2_Q2_M01728 TRANSFAC + 58038534 58038547 3.0E-06 TTTCCTTTGTCCTC 14 V_AP1_Q6_M00174 TRANSFAC + 58039776 58039786 4.0E-06 ACTGACTCAGT 11 V_COMP1_01_M00057 TRANSFAC + 58038644 58038667 3.0E-06 ACCAATCATTGCCCAGGAAAGGGG 24 V_HELIOSA_02_M01004 TRANSFAC - 58038532 58038542 1.0E-05 CAAAGGAAAAA 11 V_SOX8_04_M02912 TRANSFAC + 58039760 58039773 8.0E-06 AAATTCATGGGAGG 14 V_NFAT_Q6_M00302 TRANSFAC - 58038531 58038542 2.0E-06 CAAAGGAAAAAA 12 V_AP1_Q4_M00188 TRANSFAC + 58039776 58039786 3.0E-06 ACTGACTCAGT 11 V_SP1_Q6_M00196 TRANSFAC - 58038919 58038931 4.0E-06 GCGGGGCGGGGCC 13 V_SP4_Q5_M01273 TRANSFAC + 58038920 58038930 2.0E-06 GCCCCGCCCCG 11 V_AP1FJ_Q2_M00172 TRANSFAC + 58039776 58039786 4.0E-06 ACTGACTCAGT 11 V_REST_02_M02256 TRANSFAC - 58038993 58039013 8.0E-06 CTCAGGACCCAGGTGAGGATC 21 V_SOX14_04_M02901 TRANSFAC + 58038519 58038535 9.0E-06 TAGTTTGATGGGTTTTT 17 V_VDR_Q3_M00444 TRANSFAC + 58039115 58039129 8.0E-06 GGTGAAGAAGGGAGA 15 V_SP1_Q4_01_M00932 TRANSFAC - 58038919 58038931 6.0E-06 GCGGGGCGGGGCC 13 V_SMAD1_01_M01590 TRANSFAC - 58038536 58038547 1.0E-05 GAGGACAAAGGA 12 V_NANOG_02_M01247 TRANSFAC - 58038532 58038551 2.0E-06 AAGAGAGGACAAAGGAAAAA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.