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GABRA2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 2555 gamma-aminobutyric acid (GABA) A receptor, alpha 2 chr4 - 46390896 - 46397056 46391396 Transcription Factor Binding Sites   Download all TFBS in the GABRA2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 46388803 46388821 3.0E-06 TAGCCAGGAGGTGGAGGTG 19 MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 46394698 46394715 7.0E-06 CCAATTAGTTGTCAATTC 18 NFIA_NFI_full_dimeric_15_1 SELEX + 46388780 46388794 3.0E-06 CTGGCTATGTGCCAG 15 NFIA_NFI_full_dimeric_15_1 SELEX - 46388780 46388794 3.0E-06 CTGGCACATAGCCAG 15 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 46388164 46388175 1.0E-06 GCTAAAAATAAC 12 CUX1_CUT_DBD_dimeric_17_1 SELEX - 46394700 46394716 6.0E-06 ACCAATTAGTTGTCAAT 17 NFIX_NFI_full_dimeric_15_2 SELEX - 46388185 46388199 8.0E-06 CTGGCTAACATCCAA 15 NFIX_NFI_full_dimeric_15_2 SELEX + 46388780 46388794 2.0E-06 CTGGCTATGTGCCAG 15 NFIX_NFI_full_dimeric_15_2 SELEX - 46388780 46388794 2.0E-06 CTGGCACATAGCCAG 15 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 46388164 46388175 1.0E-06 GCTAAAAATAAC 12 Pax4_MA0068.1 JASPAR - 46391569 46391598 8.0E-06 AAATAATTTCGATACTTATCACCAGAAGCA 30 MEF2B_MADS_full_dimeric_12_1 SELEX - 46388164 46388175 1.0E-06 GCTAAAAATAAC 12 MEF2A_MA0052.1 JASPAR + 46388165 46388174 2.0E-06 TTATTTTTAG 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 46391397 46391406 9.0E-06 AGCAGCTGTC 10 Msx3_homeodomain_DBD_dimeric_18_1 SELEX - 46394698 46394715 5.0E-06 CCAATTAGTTGTCAATTC 18 POU3F1_POU_DBD_monomeric_12_1 SELEX + 46387898 46387909 4.0E-06 ATATGTTAAATA 12 Foxd3_MA0041.1 JASPAR + 46388160 46388171 4.0E-06 TAATGTTATTTT 12 NFIB_NFI_full_dimeric_15_1 SELEX + 46388780 46388794 3.0E-06 CTGGCTATGTGCCAG 15 NFIB_NFI_full_dimeric_15_1 SELEX - 46388780 46388794 3.0E-06 CTGGCACATAGCCAG 15 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX - 46391580 46391596 8.0E-06 ATAATTTCGATACTTAT 17 HOXA13_homeodomain_full_monomeric_11_1 SELEX + 46388146 46388156 4.0E-06 TCTCGTAAAGA 11 TEAD1_TEA_full_dimeric_17_1 SELEX - 46388131 46388147 8.0E-06 GAATTCTTGACAGACTT 17 POU3F2_POU_DBD_monomeric_12_1 SELEX + 46387898 46387909 5.0E-06 ATATGTTAAATA 12 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 46394698 46394715 5.0E-06 CCAATTAGTTGTCAATTC 18 V_HNF3B_01_M00131 TRANSFAC + 46388158 46388172 1.0E-05 GGTAATGTTATTTTT 15 V_MEIS1_02_M01419 TRANSFAC - 46391392 46391407 3.0E-06 GAGCAGCTGTCAAACG 16 V_MSX3_01_M01341 TRANSFAC - 46394705 46394720 5.0E-06 GGCAACCAATTAGTTG 16 V_PREP1_01_M01459 TRANSFAC - 46391392 46391407 2.0E-06 GAGCAGCTGTCAAACG 16 V_APOLYA_B_M00310 TRANSFAC + 46392817 46392831 3.0E-06 AGTAAAGTCCATTTG 15 V_EVI1_05_M00082 TRANSFAC + 46387896 46387906 6.0E-06 AGATATGTTAA 11 V_ATF5_01_M01295 TRANSFAC + 46391778 46391788 3.0E-06 TTTCTTCCTTT 11 V_NF1A_Q6_M02103 TRANSFAC + 46388780 46388795 0.0E+00 CTGGCTATGTGCCAGG 16 V_EVI1_04_M00081 TRANSFAC + 46387896 46387910 8.0E-06 AGATATGTTAAATAC 15 V_FOXD3_01_M00130 TRANSFAC + 46388160 46388171 4.0E-06 TAATGTTATTTT 12 V_BCL6_01_M01183 TRANSFAC - 46387894 46387909 1.0E-06 TATTTAACATATCTTT 16 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC - 46391574 46391585 8.0E-06 ACTTATCACCAG 12 V_COE1_Q6_M01871 TRANSFAC - 46392798 46392811 3.0E-06 GCTCAAGGGAATTC 14 V_MMEF2_Q6_M00405 TRANSFAC - 46388163 46388178 6.0E-06 GAGGCTAAAAATAACA 16 V_STAT_Q6_M00777 TRANSFAC + 46388177 46388189 6.0E-06 TCATCTTCTTGGA 13 V_MEF2_02_M00231 TRANSFAC - 46388160 46388181 0.0E+00 GATGAGGCTAAAAATAACATTA 22 V_HNF4_Q6_M00967 TRANSFAC + 46392820 46392828 7.0E-06 AAAGTCCAT 9 V_GBX2_01_M01382 TRANSFAC - 46394703 46394719 8.0E-06 GCAACCAATTAGTTGTC 17 V_GBX2_01_M01382 TRANSFAC + 46394704 46394720 9.0E-06 ACAACTAATTGGTTGCC 17 V_FOXO3A_Q1_M01137 TRANSFAC - 46388162 46388173 5.0E-06 TAAAAATAACAT 12 V_AFP1_Q6_M00616 TRANSFAC - 46388162 46388172 9.0E-06 AAAAATAACAT 11 V_SP1_02_M01303 TRANSFAC + 46391669 46391679 5.0E-06 GGGGTGGGGGG 11 V_K2B_01_M01348 TRANSFAC - 46394703 46394719 6.0E-06 GCAACCAATTAGTTGTC 17 V_K2B_01_M01348 TRANSFAC + 46394704 46394720 6.0E-06 ACAACTAATTGGTTGCC 17 V_HOXA13_03_M01430 TRANSFAC + 46388143 46388158 2.0E-06 AATTCTCGTAAAGATG 16 V_HOXC13_01_M01317 TRANSFAC + 46388143 46388158 2.0E-06 AATTCTCGTAAAGATG 16 V_MEF2A_Q6_M02024 TRANSFAC + 46388166 46388175 1.0E-06 TATTTTTAGC 10 V_LHX8_01_M01440 TRANSFAC - 46394703 46394719 7.0E-06 GCAACCAATTAGTTGTC 17 V_LHX8_01_M01440 TRANSFAC + 46394704 46394720 7.0E-06 ACAACTAATTGGTTGCC 17 V_TGIF2_01_M01407 TRANSFAC - 46391392 46391407 1.0E-06 GAGCAGCTGTCAAACG 16 V_TGIF2_01_M01407 TRANSFAC - 46394698 46394713 3.0E-06 AATTAGTTGTCAATTC 16 V_HES1_Q6_M02011 TRANSFAC + 46392128 46392137 2.0E-06 GGCACGAGCC 10 V_ZNF219_01_M01122 TRANSFAC - 46391670 46391681 2.0E-06 CTCCCCCCACCC 12 V_HELIOSA_02_M01004 TRANSFAC - 46388713 46388723 6.0E-06 GTAAGGAAAAA 11 V_MEIS2_01_M01488 TRANSFAC - 46391392 46391407 3.0E-06 GAGCAGCTGTCAAACG 16 V_MEIS2_01_M01488 TRANSFAC - 46394698 46394713 9.0E-06 AATTAGTTGTCAATTC 16 V_FOXA2_02_M02853 TRANSFAC - 46388158 46388172 5.0E-06 AAAAATAACATTACC 15 V_EN1_02_M01365 TRANSFAC - 46394705 46394720 3.0E-06 GGCAACCAATTAGTTG 16 V_RFXDC2_04_M02894 TRANSFAC - 46388114 46388130 8.0E-06 CTGGATGGTTACGATAA 17 V_TGIF_02_M01346 TRANSFAC + 46391391 46391407 3.0E-06 GCGTTTGACAGCTGCTC 17 V_ZFP105_03_M02827 TRANSFAC - 46388159 46388173 6.0E-06 TAAAAATAACATTAC 15 V_ARX_01_M01423 TRANSFAC - 46394704 46394720 6.0E-06 GGCAACCAATTAGTTGT 17 V_RSRFC4_Q2_M00407 TRANSFAC - 46388161 46388177 0.0E+00 AGGCTAAAAATAACATT 17 V_AMEF2_Q6_M00403 TRANSFAC - 46388161 46388178 1.0E-06 GAGGCTAAAAATAACATT 18 V_NFKB_Q6_M00194 TRANSFAC - 46391008 46391021 5.0E-06 GGGGGACGTTCCTG 14 V_ARID3A_02_M02839 TRANSFAC + 46391580 46391594 4.0E-06 ATAAGTATCGAAATT 15 V_FOXK1_04_M02856 TRANSFAC - 46388160 46388174 2.0E-06 CTAAAAATAACATTA 15 V_PMX2A_01_M01444 TRANSFAC + 46394703 46394718 1.0E-05 GACAACTAATTGGTTG 16 V_LHX2_01_M01325 TRANSFAC - 46394703 46394719 5.0E-06 GCAACCAATTAGTTGTC 17 V_LHX2_01_M01325 TRANSFAC + 46394704 46394720 2.0E-06 ACAACTAATTGGTTGCC 17 V_MEF2_03_M00232 TRANSFAC - 46388160 46388181 0.0E+00 GATGAGGCTAAAAATAACATTA 22 V_ASCL2_03_M02737 TRANSFAC + 46391394 46391410 1.0E-06 TTTGACAGCTGCTCTGG 17 V_HOX13_01_M00023 TRANSFAC - 46394696 46394725 9.0E-06 TTACTGGCAACCAATTAGTTGTCAATTCTT 30 V_RAX_01_M01389 TRANSFAC + 46394704 46394720 4.0E-06 ACAACTAATTGGTTGCC 17 V_MEF2_04_M00233 TRANSFAC - 46388160 46388181 0.0E+00 GATGAGGCTAAAAATAACATTA 22 V_MEF2_Q6_01_M00941 TRANSFAC + 46388163 46388174 0.0E+00 TGTTATTTTTAG 12 V_TGIF1_01_M03111 TRANSFAC + 46391391 46391407 3.0E-06 GCGTTTGACAGCTGCTC 17 V_CTCF_02_M01259 TRANSFAC + 46388800 46388819 2.0E-06 ATGTAGCCAGGAGGTGGAGG 20 V_EMX2_01_M01461 TRANSFAC + 46394704 46394720 4.0E-06 ACAACTAATTGGTTGCC 17 V_CTCF_01_M01200 TRANSFAC + 46388802 46388821 1.0E-06 GTAGCCAGGAGGTGGAGGTG 20 V_ARX_02_M02945 TRANSFAC - 46394704 46394720 6.0E-06 GGCAACCAATTAGTTGT 17 V_SOX17_04_M02904 TRANSFAC - 46387886 46387902 8.0E-06 CATATCTTTCATAGAAT 17 V_NKX32_02_M01482 TRANSFAC - 46391596 46391612 1.0E-05 CCAGCGCACTTAAAAAA 17 V_EN2_01_M01455 TRANSFAC + 46394704 46394720 6.0E-06 ACAACTAATTGGTTGCC 17 V_MYOD_Q6_02_M02100 TRANSFAC - 46391396 46391404 4.0E-06 CAGCTGTCA 9 V_ISX_01_M01331 TRANSFAC + 46394704 46394719 4.0E-06 ACAACTAATTGGTTGC 16 V_ISX_01_M01331 TRANSFAC - 46394704 46394719 2.0E-06 GCAACCAATTAGTTGT 16 V_MRG2_01_M01395 TRANSFAC - 46391392 46391407 3.0E-06 GAGCAGCTGTCAAACG 16 V_MRG2_01_M01395 TRANSFAC - 46394698 46394713 1.0E-06 AATTAGTTGTCAATTC 16 V_PKNOX2_01_M01411 TRANSFAC - 46391392 46391407 1.0E-06 GAGCAGCTGTCAAACG 16 V_SP4_04_M02914 TRANSFAC - 46392622 46392636 3.0E-06 TAAAGGCGTGATTAG 15 V_BARHL1_01_M01332 TRANSFAC - 46394705 46394720 2.0E-06 GGCAACCAATTAGTTG 16 V_MSX2_01_M01393 TRANSFAC - 46394704 46394720 5.0E-06 GGCAACCAATTAGTTGT 17 V_MSX1_02_M01412 TRANSFAC + 46394703 46394718 8.0E-06 GACAACTAATTGGTTG 16 V_MSX1_02_M01412 TRANSFAC - 46394705 46394720 5.0E-06 GGCAACCAATTAGTTG 16 V_BARX2_01_M01431 TRANSFAC - 46394703 46394718 5.0E-06 CAACCAATTAGTTGTC 16 V_RSRFC4_01_M00026 TRANSFAC + 46388162 46388177 0.0E+00 ATGTTATTTTTAGCCT 16 V_RSRFC4_01_M00026 TRANSFAC - 46388162 46388177 5.0E-06 AGGCTAAAAATAACAT 16 V_NKX11_01_M01334 TRANSFAC + 46394704 46394720 9.0E-06 ACAACTAATTGGTTGCC 17 V_RFX3_05_M02892 TRANSFAC - 46388112 46388134 4.0E-06 ACTTCTGGATGGTTACGATAATC 23 V_ALX3_01_M01355 TRANSFAC - 46394703 46394719 7.0E-06 GCAACCAATTAGTTGTC 17 V_ALX3_01_M01355 TRANSFAC + 46394704 46394720 4.0E-06 ACAACTAATTGGTTGCC 17 V_NKX12_01_M01427 TRANSFAC - 46394704 46394720 9.0E-06 GGCAACCAATTAGTTGT 17 V_CTF1_01_M01196 TRANSFAC - 46388780 46388793 3.0E-06 TGGCACATAGCCAG 14 V_CTF1_01_M01196 TRANSFAC + 46388781 46388794 9.0E-06 TGGCTATGTGCCAG 14 V_MEF2_01_M00006 TRANSFAC - 46388161 46388176 0.0E+00 GGCTAAAAATAACATT 16 V_S8_02_M01376 TRANSFAC + 46394704 46394720 7.0E-06 ACAACTAATTGGTTGCC 17 V_MEF2A_05_M01301 TRANSFAC + 46388163 46388174 0.0E+00 TGTTATTTTTAG 12 V_LHX4_01_M01421 TRANSFAC - 46394703 46394719 4.0E-06 GCAACCAATTAGTTGTC 17 V_HMEF2_Q6_M00406 TRANSFAC - 46388161 46388176 0.0E+00 GGCTAAAAATAACATT 16 V_CMAF_01_M01070 TRANSFAC - 46391024 46391042 4.0E-06 GTGTTTGCTGACGATGAGG 19 V_ALX3_02_M02943 TRANSFAC - 46394703 46394719 7.0E-06 GCAACCAATTAGTTGTC 17 V_ALX3_02_M02943 TRANSFAC + 46394704 46394720 4.0E-06 ACAACTAATTGGTTGCC 17 TLX1_NFIC_MA0119.1 JASPAR - 46388780 46388793 3.0E-06 TGGCACATAGCCAG 14 TLX1_NFIC_MA0119.1 JASPAR + 46388781 46388794 9.0E-06 TGGCTATGTGCCAG 14 V_GBX1_01_M01371 TRANSFAC + 46394703 46394719 6.0E-06 GACAACTAATTGGTTGC 17 V_GBX1_01_M01371 TRANSFAC - 46394704 46394720 1.0E-06 GGCAACCAATTAGTTGT 17 V_PAX4_04_M00380 TRANSFAC - 46391571 46391600 7.0E-06 AAAAATAATTTCGATACTTATCACCAGAAG 30

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.