Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C4orf22 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 255119 chromosome 4 open reading frame 22 chr4 + 81251873 - 81257373 81256873 Transcription Factor Binding Sites   Download all TFBS in the C4orf22 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 81256950 81256967 9.0E-06 TTGGACAATATTGTCACT 18 HSF2_HSF_DBD_trimeric_13_1 SELEX + 81256741 81256753 3.0E-06 TTCCAGAAAGTTT 13 PITX3_homeodomain_DBD_monomeric_9_1 SELEX - 81256803 81256811 8.0E-06 GTTAATCCC 9 IRF7_IRF_DBD_dimeric_14_1 SELEX - 81261286 81261299 2.0E-06 CCCAAAGTGAAAAC 14 SOX9_HMG_DBD_monomeric_9_1 SELEX - 81254432 81254440 9.0E-06 AAACAATGG 9 MAFF_bZIP_DBD_dimeric_15_1 SELEX + 81254466 81254480 6.0E-06 CTGATGATTAAGCAA 15 MAFF_bZIP_DBD_dimeric_15_1 SELEX - 81254466 81254480 6.0E-06 TTGCTTAATCATCAG 15 PITX1_homeodomain_full_monomeric_8_1 SELEX - 81256803 81256810 1.0E-05 TTAATCCC 8 IRF1_MA0050.1 JASPAR - 81261286 81261297 3.0E-06 CAAAGTGAAAAC 12 POU2F3_POU_DBD_dimeric_12_1 SELEX + 81254469 81254480 5.0E-06 ATGATTAAGCAA 12 SRY_MA0084.1 JASPAR - 81256574 81256582 7.0E-06 TAAAACAAT 9 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 81256952 81256965 2.0E-06 GGACAATATTGTCA 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 81256952 81256965 2.0E-06 TGACAATATTGTCC 14 Mafb_bZIP_DBD_dimeric_17_1 SELEX + 81254465 81254481 4.0E-06 GCTGATGATTAAGCAAT 17 MAFK_bZIP_full_dimeric_15_1 SELEX + 81254466 81254480 3.0E-06 CTGATGATTAAGCAA 15 MAFK_bZIP_full_dimeric_15_1 SELEX - 81254466 81254480 4.0E-06 TTGCTTAATCATCAG 15 TFCP2_CP2_full_dimer-of-dimers_16_1 SELEX + 81256825 81256840 7.0E-06 ACCGGCTTCAACTGAT 16 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 81254463 81254483 8.0E-06 TGGCTGATGATTAAGCAATAG 21 POU1F1_POU_DBD_monomeric_17_1 SELEX + 81254853 81254869 9.0E-06 ATTATGAATATACTAAT 17 RHOXF1_homeodomain_full_monomeric_8_1 SELEX - 81256803 81256810 1.0E-05 TTAATCCC 8 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 81256952 81256965 2.0E-06 GGACAATATTGTCA 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 81256952 81256965 3.0E-06 TGACAATATTGTCC 14 FEV_MA0156.1 JASPAR - 81256987 81256994 1.0E-05 CAGGAAAT 8 Pou5f1_MA0142.1 JASPAR + 81256558 81256572 8.0E-06 TTTTGTCTTGCATAA 15 SOX18_HMG_full_dimeric_15_3 SELEX - 81254889 81254903 9.0E-06 AGAAATTCCATTCTT 15 ETS1_ETS_full_dimeric_18_1 SELEX + 81258006 81258023 8.0E-06 GAAGGATTTGCATCCTGC 18 ETS1_ETS_full_dimeric_18_1 SELEX - 81258006 81258023 8.0E-06 GCAGGATGCAAATCCTTC 18 FOXC1_MA0032.1 JASPAR + 81254551 81254558 7.0E-06 AGTAAGTA 8 SOX9_MA0077.1 JASPAR - 81254432 81254440 2.0E-06 AAACAATGG 9 IRF3_IRF_full_trimeric_21_1 SELEX + 81256769 81256789 5.0E-06 AGAAGACAGAAACTGCAACAA 21 POU3F3_POU_DBD_dimeric_12_1 SELEX + 81254469 81254480 2.0E-06 ATGATTAAGCAA 12 POU3F3_POU_DBD_dimeric_12_1 SELEX - 81254469 81254480 1.0E-05 TTGCTTAATCAT 12 Sox2_MA0143.1 JASPAR + 81256557 81256571 3.0E-06 TTTTTGTCTTGCATA 15 FOXO6_forkhead_DBD_dimeric_14_1 SELEX + 81256513 81256526 5.0E-06 ATATACTTGTTTTT 14 E2F2_E2F_DBD_dimeric_18_1 SELEX + 81257964 81257981 7.0E-06 AGAACAGGCGCCACTATG 18 NFE2L2_MA0150.1 JASPAR + 81254469 81254479 3.0E-06 ATGATTAAGCA 11 V_MEIS1BHOXA9_02_M00421 TRANSFAC + 81258077 81258090 8.0E-06 TGACACTTTTGGAC 14 V_ATF5_01_M01295 TRANSFAC - 81261330 81261340 8.0E-06 TTTCTTCATTA 11 V_CEBP_Q3_M00770 TRANSFAC - 81256538 81256549 5.0E-06 ACATTTTGCAAA 12 V_STAT_Q6_M00777 TRANSFAC + 81254895 81254907 1.0E-06 GGAATTTCTGGGA 13 V_POU5F1_02_M02245 TRANSFAC + 81256558 81256572 8.0E-06 TTTTGTCTTGCATAA 15 V_CBF_02_M01080 TRANSFAC - 81261416 81261431 7.0E-06 AGAAGTGTGGTTTCCA 16 V_MAFB_03_M02879 TRANSFAC + 81254442 81254456 2.0E-06 TAAGTGCAAAAAAGC 15 V_MAFB_03_M02879 TRANSFAC - 81256533 81256547 7.0E-06 ATTTTGCAAAAAGAC 15 V_CEBP_Q2_M00190 TRANSFAC - 81254470 81254483 9.0E-06 CTATTGCTTAATCA 14 V_CEBP_Q2_M00190 TRANSFAC - 81256534 81256547 7.0E-06 ATTTTGCAAAAAGA 14 V_RFX4_03_M02789 TRANSFAC - 81256887 81256901 1.0E-06 GTCCCTAGCAACGGA 15 V_EAR2_Q2_M01728 TRANSFAC + 81254870 81254883 9.0E-06 CCTTCTTTGTCCTT 14 V_AP2_Q6_M00189 TRANSFAC - 81256792 81256803 6.0E-06 CACCCCCCGGCG 12 V_BRN2_01_M00145 TRANSFAC + 81261322 81261337 4.0E-06 CCCATGGATAATGAAG 16 V_HELIOSA_01_M01003 TRANSFAC - 81257943 81257953 0.0E+00 AATAGGGATAA 11 V_REX1_01_M01695 TRANSFAC - 81260380 81260389 1.0E-05 GAAGCCATTA 10 V_NFY_C_M00209 TRANSFAC + 81256835 81256848 2.0E-06 ACTGATTGGCAGGA 14 V_PITX1_Q6_M01826 TRANSFAC + 81254527 81254537 6.0E-06 GACACAAATCT 11 V_SOX13_03_M02797 TRANSFAC - 81256569 81256584 3.0E-06 TCTAAAACAATGTTAT 16 V_SOX7_03_M02807 TRANSFAC - 81254425 81254446 1.0E-06 ACTTAGAAACAATGGTGATACT 22 V_SOX7_03_M02807 TRANSFAC - 81256565 81256586 4.0E-06 ATTCTAAAACAATGTTATGCAA 22 V_POU3F2_01_M00463 TRANSFAC + 81254856 81254869 1.0E-06 ATGAATATACTAAT 14 V_PR_Q2_M00960 TRANSFAC + 81257961 81257970 7.0E-06 GAGAGAACAG 10 V_SOX7_04_M02911 TRANSFAC + 81256539 81256560 8.0E-06 TTGCAAAATGTCTCGGTATTTT 22 V_STAT5A_02_M00460 TRANSFAC - 81254885 81254908 3.0E-06 ATCCCAGAAATTCCATTCTTTGCA 24 V_OBOX2_01_M01364 TRANSFAC + 81256798 81256814 1.0E-05 GGGGTGGGATTAACGTC 17 V_SOX18_03_M02801 TRANSFAC + 81256570 81256585 0.0E+00 TAACATTGTTTTAGAA 16 V_TATA_C_M00216 TRANSFAC + 81254932 81254941 3.0E-06 TCTTTAAAAA 10 V_RFXDC2_03_M02790 TRANSFAC - 81256887 81256901 1.0E-06 GTCCCTAGCAACGGA 15 V_OCT1_04_M00138 TRANSFAC - 81254847 81254869 4.0E-06 ATTAGTATATTCATAATAAAACC 23 V_OCT1_04_M00138 TRANSFAC + 81254848 81254870 4.0E-06 GTTTTATTATGAATATACTAATC 23 V_OCT1_04_M00138 TRANSFAC + 81254854 81254876 4.0E-06 TTATGAATATACTAATCCTTCTT 23 V_PITX3_01_M01343 TRANSFAC + 81256800 81256815 7.0E-06 GGTGGGATTAACGTCC 16 V_BBX_04_M02843 TRANSFAC + 81254497 81254513 5.0E-06 TCATAGTTAACAAGCAG 17 V_NKX3A_01_M00451 TRANSFAC + 81254550 81254561 5.0E-06 GAGTAAGTATAT 12 V_NKX3A_01_M00451 TRANSFAC - 81256513 81256524 4.0E-06 AAACAAGTATAT 12 V_SOX11_03_M02795 TRANSFAC - 81254869 81254885 4.0E-06 AAAAGGACAAAGAAGGA 17 V_SOX9_B1_M00410 TRANSFAC - 81254430 81254443 8.0E-06 TAGAAACAATGGTG 14 V_IRX5_01_M01472 TRANSFAC + 81254553 81254569 7.0E-06 TAAGTATATGTTTTTTT 17 V_FOXO1_Q5_M01216 TRANSFAC - 81256518 81256526 8.0E-06 AAAAACAAG 9 V_OTX2_Q3_M01719 TRANSFAC - 81254863 81254875 1.0E-05 AGAAGGATTAGTA 13 V_MYOD_Q6_02_M02100 TRANSFAC + 81257134 81257142 4.0E-06 CAGCTGTCA 9 V_HAND1E47_01_M00222 TRANSFAC - 81254520 81254535 2.0E-06 ATTTGTGTCTGGTGTT 16 V_OBOX2_02_M03064 TRANSFAC + 81256798 81256814 1.0E-05 GGGGTGGGATTAACGTC 17 V_CEBPA_01_M00116 TRANSFAC - 81254470 81254483 0.0E+00 CTATTGCTTAATCA 14 V_CEBPA_01_M00116 TRANSFAC - 81256534 81256547 7.0E-06 ATTTTGCAAAAAGA 14 V_PITX1_01_M01484 TRANSFAC + 81256798 81256814 7.0E-06 GGGGTGGGATTAACGTC 17 V_SMAD3_03_M02794 TRANSFAC + 81254519 81254535 4.0E-06 CAACACCAGACACAAAT 17 V_DOBOX5_01_M01463 TRANSFAC - 81254860 81254876 5.0E-06 AAGAAGGATTAGTATAT 17 V_HNF1B_01_M01425 TRANSFAC - 81254495 81254511 5.0E-06 GCTTGTTAACTATGACT 17 V_FOXO3_01_M00477 TRANSFAC - 81254499 81254512 5.0E-06 TGCTTGTTAACTAT 14 V_STAT6_02_M00500 TRANSFAC + 81256986 81256993 1.0E-05 GATTTCCT 8 V_CEBPB_Q6_M01896 TRANSFAC + 81254473 81254482 4.0E-06 TTAAGCAATA 10 V_IRF1_Q6_01_M01881 TRANSFAC + 81261285 81261298 7.0E-06 AGTTTTCACTTTGG 14 V_SOX14_04_M02901 TRANSFAC + 81256726 81256742 0.0E+00 AACTTGGGTGGGTAATT 17 V_SOX2_01_M02246 TRANSFAC + 81256557 81256571 3.0E-06 TTTTTGTCTTGCATA 15 V_VMAF_01_M00035 TRANSFAC + 81254464 81254482 6.0E-06 GGCTGATGATTAAGCAATA 19 V_SOX18_04_M02905 TRANSFAC - 81254414 81254429 2.0E-06 ATACTAAATTTACTTG 16 V_GSC_01_M01428 TRANSFAC + 81254860 81254876 9.0E-06 ATATACTAATCCTTCTT 17 V_FOXO1_01_M00473 TRANSFAC - 81256518 81256527 9.0E-06 CAAAAACAAG 10 V_SOX2_Q6_M01272 TRANSFAC + 81254428 81254443 2.0E-06 ATCACCATTGTTTCTA 16 V_RFX3_04_M02788 TRANSFAC - 81256883 81256905 3.0E-06 AAGCGTCCCTAGCAACGGAAGCA 23 V_PITX2_01_M01447 TRANSFAC - 81254860 81254876 2.0E-06 AAGAAGGATTAGTATAT 17 V_NFE2L2_01_M02263 TRANSFAC + 81254469 81254479 3.0E-06 ATGATTAAGCA 11 V_FOXO4_01_M00472 TRANSFAC - 81256516 81256526 5.0E-06 AAAAACAAGTA 11 V_CEBP_Q2_01_M00912 TRANSFAC - 81254470 81254481 4.0E-06 ATTGCTTAATCA 12 V_CEBP_Q2_01_M00912 TRANSFAC - 81261397 81261408 8.0E-06 GTTGCACAATCA 12 V_MAFK_04_M02880 TRANSFAC + 81256774 81256788 9.0E-06 ACAGAAACTGCAACA 15 V_IRXB3_01_M01377 TRANSFAC + 81254553 81254569 4.0E-06 TAAGTATATGTTTTTTT 17 V_OBOX3_02_M03065 TRANSFAC + 81256798 81256814 6.0E-06 GGGGTGGGATTAACGTC 17 V_FEV_01_M02269 TRANSFAC - 81256987 81256994 1.0E-05 CAGGAAAT 8 V_OTX1_01_M01366 TRANSFAC - 81254860 81254876 4.0E-06 AAGAAGGATTAGTATAT 17 V_CEBPG_Q6_01_M01869 TRANSFAC - 81261398 81261409 8.0E-06 GGTTGCACAATC 12 V_OBOX3_01_M01466 TRANSFAC + 81256798 81256814 6.0E-06 GGGGTGGGATTAACGTC 17 V_AR_Q2_M00447 TRANSFAC - 81257964 81257978 1.0E-05 AGTGGCGCCTGTTCT 15 V_SMAD1_01_M01590 TRANSFAC - 81254872 81254883 4.0E-06 AAGGACAAAGAA 12 V_DMRT5_01_M01150 TRANSFAC - 81256777 81256791 2.0E-06 GTTTGTTGCAGTTTC 15 V_CEBPA_Q6_M01866 TRANSFAC + 81254470 81254482 4.0E-06 TGATTAAGCAATA 13 V_CEBPA_Q6_M01866 TRANSFAC - 81256537 81256549 3.0E-06 ACATTTTGCAAAA 13 V_NANOG_02_M01247 TRANSFAC - 81254868 81254887 5.0E-06 GCAAAAGGACAAAGAAGGAT 20 V_NANOG_02_M01247 TRANSFAC - 81256552 81256571 2.0E-06 TATGCAAGACAAAAATACCG 20 V_OCT4_01_M01125 TRANSFAC + 81256558 81256572 6.0E-06 TTTTGTCTTGCATAA 15 V_HSF1_Q6_01_M02017 TRANSFAC - 81256740 81256753 1.0E-06 AAACTTTCTGGAAT 14 V_OTX3_01_M01403 TRANSFAC - 81254861 81254877 2.0E-06 AAAGAAGGATTAGTATA 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.