Search TFs
or Genes
Construction
and Validation
Optimal
Promoter Size
Download Citation and
Contact

CCDC108


EntrezDescriptionChrom.StrandPromoter
(Start - Stop)
TSS
255101 coiled-coil domain containing 108 chr2 -219905745 - 219911245 219906245

Transcription Factor Binding Sites

 
Download all TFBS in the CCDC108 promoter
 
MotifSourceStrandStartStop PValueMatch
Sequence
Overlap w/
Footprints
RFX4_RFX_DBD_dimeric_16_1 SELEX + 219906226 219906241 9.0E-06 CGTCTCCATAGATACA 16
RFX4_RFX_DBD_dimeric_16_1 SELEX - 219906226 219906241 4.0E-06 TGTATCTATGGAGACG 16
RFX2_RFX_DBD_dimeric_16_1 SELEX + 219906226 219906241 9.0E-06 CGTCTCCATAGATACA 16
RFX2_RFX_DBD_dimeric_16_1 SELEX - 219906226 219906241 6.0E-06 TGTATCTATGGAGACG 16
REST_MA0138.2 JASPAR + 219910864 219910884 0.0E+00 ACCAGCACCACGGACAGCTCC 21
IRF3_IRF_full_trimeric_21_1 SELEX - 219906344 219906364 6.0E-06 AGGGAATCAAAACTGAATATA 21
V_NRSF_Q4_M01028 TRANSFAC - 219910865 219910883 0.0E+00 GAGCTGTCCGTGGTGCTGG 19
V_HOXA13_02_M01297 TRANSFAC - 219906333 219906341 4.0E-06 AAATAAAAT 9
V_NRSE_B_M00325 TRANSFAC + 219910864 219910884 1.0E-06 ACCAGCACCACGGACAGCTCC 21
V_YY1_Q6_02_M01035 TRANSFAC + 219906213 219906223 9.0E-06 GCCTCCATATT 11
V_REST_01_M01256 TRANSFAC - 219910867 219910888 0.0E+00 AGCGGGAGCTGTCCGTGGTGCT 22
V_ISGF3G_03_M02771 TRANSFAC - 219906349 219906363 4.0E-06 GGGAATCAAAACTGA 15
V_ELF1_Q6_M00746 TRANSFAC - 219906338 219906349 3.0E-06 AATATAGGAAAT 12
V_MTF1_06_M02882 TRANSFAC - 219906335 219906348 1.0E-06 ATATAGGAAATAAA 14
V_AP4_01_M00005 TRANSFAC - 219910843 219910860 0.0E+00 AGAGCCAGCTGGAGACTG 18
V_NRSF_01_M00256 TRANSFAC + 219910864 219910884 0.0E+00 ACCAGCACCACGGACAGCTCC 21
V_REST_02_M02256 TRANSFAC + 219910864 219910884 0.0E+00 ACCAGCACCACGGACAGCTCC 21
V_HOXA10_01_M01464 TRANSFAC - 219906330 219906345 4.0E-06 TAGGAAATAAAATTGG 16
V_EHF_07_M02849 TRANSFAC + 219906334 219906349 1.0E-06 TTTTATTTCCTATATT 16
V_ZID_01_M00085 TRANSFAC + 219910854 219910866 1.0E-06 TGGCTCTATGACC 13
V_TCF3_05_M02920 TRANSFAC - 219906332 219906346 5.0E-06 ATAGGAAATAAAATT 15
Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns.
Developed at the Institute for Systems Biology in the Baliga Lab.
A Django site.   Powered by PostgreSQL