Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TMEM9 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 252839 transmembrane protein 9 chr1 - 201123132 - 201128632 201123632 Transcription Factor Binding Sites   Download all TFBS in the TMEM9 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 201118685 201118702 8.0E-06 TATGCACATATGGTCATA 18 CTCF_MA0139.1 JASPAR + 201118708 201118726 2.0E-06 TCAACACTAGGTGGCAGGA 19 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 201123920 201123932 7.0E-06 GTCAACAAAAACG 13 SRY_HMG_DBD_dimeric_13_2 SELEX - 201123971 201123983 7.0E-06 TAAATAACATTTC 13 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 201123917 201123928 6.0E-06 AACGTCAACAAA 12 RFX4_RFX_DBD_dimeric_16_1 SELEX + 201123666 201123681 0.0E+00 TGTCGCCATGGCAACA 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 201123666 201123681 0.0E+00 TGTTGCCATGGCGACA 16 FOXO3_MA0157.1 JASPAR + 201118731 201118738 7.0E-06 TGTAAACA 8 EWSR1-FLI1_MA0149.1 JASPAR - 201123232 201123249 6.0E-06 GGCGGGAGGGAAGCAGGG 18 GATA5_GATA_DBD_monomeric_8_1 SELEX + 201123037 201123044 7.0E-06 AGATAAGA 8 GATA4_GATA_DBD_monomeric_8_1 SELEX + 201123037 201123044 7.0E-06 AGATAAGA 8 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 201123969 201123982 6.0E-06 AAATAACATTTCCA 14 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 201123666 201123681 0.0E+00 TGTCGCCATGGCAACA 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 201123666 201123681 0.0E+00 TGTTGCCATGGCGACA 16 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 201123969 201123982 8.0E-06 AAATAACATTTCCA 14 SP1_MA0079.2 JASPAR + 201123545 201123554 3.0E-06 CCCCTCCCCC 10 PRDM4_C2H2_full_monomeric_13_1 SELEX - 201121953 201121965 7.0E-06 TTTCAAGAAGCCC 13 Gata1_MA0035.2 JASPAR + 201123035 201123045 3.0E-06 AAAGATAAGAG 11 GATA3_GATA_full_monomeric_8_1 SELEX + 201123037 201123044 7.0E-06 AGATAAGA 8 RFX2_RFX_DBD_dimeric_16_1 SELEX + 201123666 201123681 0.0E+00 TGTCGCCATGGCAACA 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 201123666 201123681 0.0E+00 TGTTGCCATGGCGACA 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 201123666 201123681 0.0E+00 TGTCGCCATGGCAACA 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 201123666 201123681 0.0E+00 TGTTGCCATGGCGACA 16 Pou5f1_MA0142.1 JASPAR + 201118679 201118693 9.0E-06 CCTTTTTATGCACAT 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 201123918 201123930 8.0E-06 ACGTCAACAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 201123920 201123932 4.0E-06 GTCAACAAAAACG 13 RREB1_MA0073.1 JASPAR + 201123009 201123028 8.0E-06 CCAGCAAACACCCGACCACA 20 V_BCL6_Q3_01_M02085 TRANSFAC - 201121957 201121966 3.0E-06 CTTTCAAGAA 10 V_BCL6_Q3_01_M02085 TRANSFAC - 201123880 201123889 5.0E-06 CTTTCTAAAA 10 V_POU3F3_01_M03090 TRANSFAC - 201118680 201118696 9.0E-06 CATATGTGCATAAAAAG 17 V_FOXO3_02_M02270 TRANSFAC + 201118731 201118738 7.0E-06 TGTAAACA 8 V_ATF5_01_M01295 TRANSFAC + 201123833 201123843 6.0E-06 CTTCTCCCTTC 11 V_SOX40_04_M02908 TRANSFAC - 201123845 201123860 8.0E-06 GAGTTTTATAATACAA 16 V_SRY_07_M02813 TRANSFAC + 201123845 201123860 9.0E-06 TTGTATTATAAAACTC 16 V_GATA2_02_M00348 TRANSFAC + 201123035 201123044 1.0E-06 AAAGATAAGA 10 V_ACAAT_B_M00309 TRANSFAC - 201118650 201118658 8.0E-06 CATTGGTGG 9 V_POU5F1_02_M02245 TRANSFAC + 201118679 201118693 9.0E-06 CCTTTTTATGCACAT 15 V_OCTAMER_01_M01324 TRANSFAC - 201118680 201118696 9.0E-06 CATATGTGCATAAAAAG 17 V_FOXJ1_03_M02750 TRANSFAC + 201123917 201123932 5.0E-06 AACGTCAACAAAAACG 16 V_SP1_03_M02281 TRANSFAC + 201123545 201123554 3.0E-06 CCCCTCCCCC 10 V_AP4_Q6_02_M01860 TRANSFAC + 201122996 201123008 1.0E-05 TCAGCTGGGGGCA 13 V_BEL1_B_M00312 TRANSFAC + 201118780 201118807 9.0E-06 TGTCAGATGATTCTGGCTTTACTCTGCA 28 V_FOXO1_02_M00474 TRANSFAC - 201123917 201123930 3.0E-06 TTTTTGTTGACGTT 14 V_SOX8_04_M02912 TRANSFAC + 201121980 201121993 2.0E-06 GCATTCATAACAGA 14 V_XFD3_01_M00269 TRANSFAC + 201123917 201123930 1.0E-05 AACGTCAACAAAAA 14 V_ZBP89_Q4_M01816 TRANSFAC + 201123546 201123555 4.0E-06 CCCTCCCCCA 10 V_SOX_Q6_M01014 TRANSFAC - 201121936 201121948 1.0E-06 CTCATTGTTACCA 13 V_GLIS2_03_M02759 TRANSFAC + 201123514 201123529 8.0E-06 CTGGGACCCCCAATAG 16 V_ZBRK1_01_M01105 TRANSFAC - 201123228 201123242 7.0E-06 GGGAAGCAGGGTTTG 15 V_GATA1_09_M02254 TRANSFAC + 201123035 201123045 3.0E-06 AAAGATAAGAG 11 V_PBX1_05_M01967 TRANSFAC + 201121943 201121956 7.0E-06 AATGAGTGACGGGC 14 V_TBP_06_M02814 TRANSFAC + 201123845 201123860 9.0E-06 TTGTATTATAAAACTC 16 V_CTCF_02_M01259 TRANSFAC + 201118705 201118724 2.0E-06 CTCTCAACACTAGGTGGCAG 20 V_SOX17_04_M02904 TRANSFAC + 201121976 201121992 8.0E-06 GAGCGCATTCATAACAG 17 V_CREBP1CJUN_01_M00041 TRANSFAC - 201123916 201123923 1.0E-05 TGACGTTA 8 V_SIRT6_01_M01797 TRANSFAC + 201123037 201123044 7.0E-06 AGATAAGA 8 V_FOXL1_04_M02753 TRANSFAC + 201123915 201123931 6.0E-06 GTAACGTCAACAAAAAC 17 V_GATA3_02_M00350 TRANSFAC + 201123035 201123044 1.0E-06 AAAGATAAGA 10 V_TCF7_04_M02921 TRANSFAC + 201123845 201123859 0.0E+00 TTGTATTATAAAACT 15 V_TCF7_04_M02921 TRANSFAC + 201123877 201123891 5.0E-06 CTGTTTTAGAAAGAA 15 V_GATA6_01_M00462 TRANSFAC + 201123035 201123044 0.0E+00 AAAGATAAGA 10 V_FOXO3_01_M00477 TRANSFAC - 201123917 201123930 2.0E-06 TTTTTGTTGACGTT 14 V_ASCL2_04_M02841 TRANSFAC - 201123694 201123709 6.0E-06 GTCTCCCCGCCCAGGT 16 V_PLZF_02_M01075 TRANSFAC + 201123841 201123869 0.0E+00 TTCCTTGTATTATAAAACTCAGCTTGTTT 29 V_ZFP281_01_M01597 TRANSFAC - 201123545 201123555 1.0E-06 TGGGGGAGGGG 11 V_GATA2_03_M00349 TRANSFAC + 201123035 201123044 2.0E-06 AAAGATAAGA 10 V_EWSR1FLI1_01_M02252 TRANSFAC - 201123232 201123249 6.0E-06 GGCGGGAGGGAAGCAGGG 18 V_GATA5_03_M02756 TRANSFAC - 201123048 201123064 9.0E-06 AAGCCTGATAAGCATGA 17 V_UF1H3BETA_Q6_M01068 TRANSFAC - 201123544 201123557 6.0E-06 ATTGGGGGAGGGGA 14 V_CMAF_01_M01070 TRANSFAC - 201123913 201123931 1.0E-06 GTTTTTGTTGACGTTACTA 19 V_GATA6_04_M02757 TRANSFAC + 201123032 201123048 8.0E-06 ACCAAAGATAAGAGCTT 17 V_GATA6_04_M02757 TRANSFAC - 201123048 201123064 1.0E-05 AAGCCTGATAAGCATGA 17 V_DTYPEPA_B_M00334 TRANSFAC + 201118758 201118767 1.0E-06 GCCATTAAAC 10 V_GLIS2_04_M02863 TRANSFAC + 201123846 201123859 7.0E-06 TGTATTATAAAACT 14 V_FOXK1_03_M02752 TRANSFAC + 201123915 201123931 3.0E-06 GTAACGTCAACAAAAAC 17 V_RFX1_02_M00281 TRANSFAC + 201123665 201123682 0.0E+00 CTGTCGCCATGGCAACAA 18 V_RFX1_02_M00281 TRANSFAC - 201123665 201123682 9.0E-06 TTGTTGCCATGGCGACAG 18 V_GATA1_06_M00347 TRANSFAC + 201123035 201123044 4.0E-06 AAAGATAAGA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.