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FXN Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 2395 frataxin chr9 + 71645478 - 71650978 71650478 Transcription Factor Binding Sites   Download all TFBS in the FXN promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 71646605 71646615 1.0E-06 AATGACTCATT 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 71646605 71646615 2.0E-06 AATGAGTCATT 11 CTCF_MA0139.1 JASPAR + 71650633 71650651 0.0E+00 TGGCCACCAGGGGTCGCCG 19 NF-kappaB_MA0061.1 JASPAR + 71651502 71651511 9.0E-06 GGGGATTCCC 10 ZNF306_C2H2_full_monomeric_14_1 SELEX + 71650586 71650599 1.0E-06 AGGTCTAACCTCTA 14 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX - 71649147 71649158 2.0E-06 TGACAAGTGTCA 12 POU1F1_POU_DBD_monomeric_14_1 SELEX - 71646610 71646623 8.0E-06 GACATGTAAATGAG 14 NFKB1_MA0105.1 JASPAR + 71651501 71651511 9.0E-06 GGGGGATTCCC 11 NFKB1_MA0105.1 JASPAR + 71651502 71651512 0.0E+00 GGGGATTCCCC 11 NFKB1_MA0105.1 JASPAR - 71651502 71651512 1.0E-06 GGGGAATCCCC 11 Esrrb_MA0141.1 JASPAR - 71651494 71651505 7.0E-06 CCCCCAAGGTCA 12 Pknox2_MEIS_DBD_dimeric_12_1 SELEX - 71649147 71649158 1.0E-06 TGACAAGTGTCA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX - 71649147 71649158 1.0E-06 TGACAAGTGTCA 12 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 71651336 71651349 6.0E-06 ACCTAATATTTTCA 14 NFKB2_NFAT_DBD_dimeric_13_1 SELEX - 71651501 71651513 0.0E+00 AGGGGAATCCCCC 13 TEAD1_TEA_full_monomeric_10_1 SELEX + 71649136 71649145 8.0E-06 TACATTCCTC 10 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 71649147 71649158 0.0E+00 TGACAAGTGTCA 12 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 71651336 71651349 4.0E-06 ACCTAATATTTTCA 14 Esrra_nuclearreceptor_DBD_dimeric_17_1 SELEX - 71649154 71649170 8.0E-06 TAGGATGCTAAATGACA 17 TCF4_bHLH_full_dimeric_10_1 SELEX + 71649122 71649131 5.0E-06 CACACCTGTT 10 CTCF_C2H2_full_monomeric_17_1 SELEX - 71650634 71650650 3.0E-06 GGCGACCCCTGGTGGCC 17 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX + 71651085 71651101 1.0E-06 GGGGACATTTTGTCCTG 17 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX - 71651085 71651101 1.0E-06 CAGGACAAAATGTCCCC 17 PBX1_MA0070.1 JASPAR + 71645872 71645883 8.0E-06 TTACCAATCAAT 12 PBX1_MA0070.1 JASPAR + 71645876 71645887 7.0E-06 CAATCAATCCAA 12 NFKB1_NFAT_DBD_dimeric_13_1 SELEX + 71651501 71651513 0.0E+00 GGGGGATTCCCCT 13 NFKB1_NFAT_DBD_dimeric_13_1 SELEX - 71651501 71651513 0.0E+00 AGGGGAATCCCCC 13 TEAD3_TEA_DBD_dimeric_17_1 SELEX - 71649161 71649177 8.0E-06 ACATACTTAGGATGCTA 17 TGIF2LX_MEIS_full_dimeric_12_1 SELEX - 71649147 71649158 9.0E-06 TGACAAGTGTCA 12 Hltf_MA0109.1 JASPAR - 71646336 71646345 1.0E-05 ATCCTTTTAT 10 JDP2_bZIP_full_dimeric_9_1 SELEX + 71646606 71646614 2.0E-06 ATGACTCAT 9 JDP2_bZIP_full_dimeric_9_1 SELEX - 71646606 71646614 4.0E-06 ATGAGTCAT 9 Meis2_MEIS_DBD_dimeric_12_1 SELEX - 71649121 71649132 8.0E-06 TAACAGGTGTGA 12 Meis2_MEIS_DBD_dimeric_12_1 SELEX - 71649147 71649158 1.0E-06 TGACAAGTGTCA 12 NR3C1_MA0113.1 JASPAR + 71651085 71651102 2.0E-06 GGGGACATTTTGTCCTGC 18 NR3C1_MA0113.1 JASPAR - 71651362 71651379 6.0E-06 GAAAGCATTTCGTTCAAA 18 MEIS2_MEIS_DBD_dimeric_14_1 SELEX + 71649146 71649159 7.0E-06 TTGACACTTGTCAT 14 MEIS2_MEIS_DBD_dimeric_14_1 SELEX - 71649146 71649159 1.0E-06 ATGACAAGTGTCAA 14 FOXC1_MA0032.1 JASPAR + 71650863 71650870 7.0E-06 AGTAAGTA 8 IRF5_IRF_full_dimeric_14_1 SELEX - 71646324 71646337 8.0E-06 ATGAAACCAAACTT 14 SNAI2_C2H2_DBD_monomeric_9_1 SELEX - 71649123 71649131 3.0E-06 AACAGGTGT 9 NR3C1_nuclearreceptor_DBD_dimeric_17_1 SELEX + 71651085 71651101 2.0E-06 GGGGACATTTTGTCCTG 17 NR3C1_nuclearreceptor_DBD_dimeric_17_1 SELEX - 71651085 71651101 2.0E-06 CAGGACAAAATGTCCCC 17 TGIF1_MEIS_DBD_dimeric_12_1 SELEX - 71649147 71649158 2.0E-06 TGACAAGTGTCA 12 RREB1_MA0073.1 JASPAR - 71651286 71651305 4.0E-06 ACACAACACACACGCTATAT 20 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX + 71646429 71646439 8.0E-06 TGTAATAAATT 11 HNF1A_MA0046.1 JASPAR - 71646429 71646442 5.0E-06 GGTAATTTATTACA 14 TEAD1_MA0090.1 JASPAR + 71649136 71649147 2.0E-06 TACATTCCTCTT 12 V_RUSH1A_02_M01107 TRANSFAC - 71646336 71646345 1.0E-05 ATCCTTTTAT 10 V_MEQ_01_M02049 TRANSFAC - 71651293 71651301 7.0E-06 AACACACAC 9 V_MTF1_01_M01242 TRANSFAC + 71650794 71650813 7.0E-06 GTTGGCCCCACTCTGCGGCC 20 V_AP1_Q2_M00173 TRANSFAC + 71646605 71646615 6.0E-06 AATGACTCATT 11 V_TST1_02_M01316 TRANSFAC + 71646428 71646444 6.0E-06 GTGTAATAAATTACCTA 17 V_DBX1_01_M01483 TRANSFAC + 71646431 71646447 3.0E-06 TAATAAATTACCTAAAA 17 V_FOXP3_Q4_M00992 TRANSFAC - 71651199 71651215 3.0E-06 AACAAGTTATCGCAGAG 17 V_NFKB_Q6_01_M00774 TRANSFAC - 71651501 71651516 7.0E-06 GTTAGGGGAATCCCCC 16 V_LEF1_04_M02774 TRANSFAC + 71645851 71645867 8.0E-06 ACATCCTTTTATCAATC 17 V_AR_02_M00953 TRANSFAC - 71645842 71645868 6.0E-06 AGATTGATAAAAGGATGTTCTTTGACA 27 V_ZFX_01_M01593 TRANSFAC - 71650812 71650827 9.0E-06 GCGCAGGCCACGGCGG 16 V_HMGIY_Q3_M01010 TRANSFAC + 71651352 71651366 5.0E-06 GCTGGATTTTTTTGA 15 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC + 71651340 71651351 4.0E-06 AATATTTTCAAG 12 V_MEF2_02_M00231 TRANSFAC + 71651215 71651236 7.0E-06 TTCAGTAATATTAATAGATGGT 22 V_SRY_02_M00160 TRANSFAC - 71650539 71650550 5.0E-06 TTTAACAAAAAT 12 V_P50P50_Q3_M01223 TRANSFAC - 71651501 71651513 1.0E-06 AGGGGAATCCCCC 13 V_AREB6_04_M00415 TRANSFAC - 71646178 71646186 8.0E-06 CTGTTTCTT 9 V_GM497_04_M02864 TRANSFAC - 71651289 71651304 7.0E-06 CACAACACACACGCTA 16 V_NR3C1_01_M02219 TRANSFAC + 71651085 71651102 2.0E-06 GGGGACATTTTGTCCTGC 18 V_NR3C1_01_M02219 TRANSFAC - 71651362 71651379 6.0E-06 GAAAGCATTTCGTTCAAA 18 V_TAL1_GATA1_01_M02243 TRANSFAC + 71651541 71651558 1.0E-06 CTGTAGGGAGAAGATAAA 18 V_HNF1_C_M00206 TRANSFAC - 71646427 71646443 3.0E-06 AGGTAATTTATTACACA 17 V_AP1_Q6_M00174 TRANSFAC + 71646605 71646615 0.0E+00 AATGACTCATT 11 V_NFY_C_M00209 TRANSFAC - 71645870 71645883 1.0E-06 ATTGATTGGTAAGA 14 V_ELF4_04_M02850 TRANSFAC - 71651352 71651368 2.0E-06 GTTCAAAAAAATCCAGC 17 V_BACH1_01_M00495 TRANSFAC - 71646603 71646617 2.0E-06 TAAATGAGTCATTCT 15 V_PR_01_M00954 TRANSFAC - 71645842 71645868 4.0E-06 AGATTGATAAAAGGATGTTCTTTGACA 27 V_ARID5A_03_M02736 TRANSFAC - 71651215 71651228 4.0E-06 TTAATATTACTGAA 14 V_TEF_Q6_M00672 TRANSFAC + 71646328 71646339 7.0E-06 TTGGTTTCATAA 12 V_IRX4_01_M01410 TRANSFAC - 71646611 71646627 3.0E-06 AGTAGACATGTAAATGA 17 V_AP1_Q6_01_M00925 TRANSFAC + 71646606 71646614 4.0E-06 ATGACTCAT 9 V_NFKB_Q6_M00194 TRANSFAC - 71651500 71651513 8.0E-06 AGGGGAATCCCCCA 14 V_AP1_Q4_M00188 TRANSFAC + 71646605 71646615 8.0E-06 AATGACTCATT 11 V_E47_02_M00071 TRANSFAC - 71649119 71649134 5.0E-06 ACTAACAGGTGTGAGT 16 V_JUNDM2_04_M02876 TRANSFAC + 71646602 71646617 2.0E-06 AAGAATGACTCATTTA 16 V_PBX1_01_M00096 TRANSFAC + 71645874 71645882 1.0E-05 ACCAATCAA 9 V_YY1_Q6_02_M01035 TRANSFAC + 71650533 71650543 4.0E-06 CTCTCCATTTT 11 Tal1_Gata1_MA0140.1 JASPAR + 71651541 71651558 1.0E-06 CTGTAGGGAGAAGATAAA 18 V_NFKAPPAB50_01_M00051 TRANSFAC + 71651502 71651511 2.0E-06 GGGGATTCCC 10 V_TEF_01_M01305 TRANSFAC + 71649136 71649147 2.0E-06 TACATTCCTCTT 12 V_TCF7_03_M02817 TRANSFAC - 71651356 71651372 1.0E-05 TTTCGTTCAAAAAAATC 17 V_AP1_C_M00199 TRANSFAC - 71646606 71646614 8.0E-06 ATGAGTCAT 9 V_CDC5_01_M00478 TRANSFAC - 71650541 71650552 5.0E-06 CATTTAACAAAA 12 V_HB24_01_M01399 TRANSFAC + 71646428 71646442 4.0E-06 GTGTAATAAATTACC 15 V_HB24_01_M01399 TRANSFAC - 71646429 71646443 3.0E-06 AGGTAATTTATTACA 15 V_TBP_06_M02814 TRANSFAC + 71649094 71649109 7.0E-06 GCTCTATATAAATCTC 16 V_CTCF_02_M01259 TRANSFAC + 71650630 71650649 1.0E-06 CAGTGGCCACCAGGGGTCGC 20 V_IRX3_01_M01318 TRANSFAC - 71646611 71646627 7.0E-06 AGTAGACATGTAAATGA 17 V_CTCF_01_M01200 TRANSFAC + 71650632 71650651 0.0E+00 GTGGCCACCAGGGGTCGCCG 20 V_OCT_Q6_M00795 TRANSFAC + 71646611 71646621 1.0E-05 TCATTTACATG 11 V_IRX5_01_M01472 TRANSFAC - 71646611 71646627 4.0E-06 AGTAGACATGTAAATGA 17 V_FOXO1_Q5_M01216 TRANSFAC - 71651533 71651541 5.0E-06 GAAAACAAA 9 V_IRF7_01_M00453 TRANSFAC + 71646313 71646330 0.0E+00 TGGGAATATGAAAGTTTG 18 V_GATA4_Q3_M00632 TRANSFAC + 71651552 71651563 4.0E-06 AGATAAAGGTGA 12 V_ZFP105_04_M02931 TRANSFAC + 71651211 71651227 4.0E-06 TTGTTTCAGTAATATTA 17 V_IRX3_02_M01485 TRANSFAC - 71646611 71646627 7.0E-06 AGTAGACATGTAAATGA 17 V_AP1_Q4_01_M00926 TRANSFAC - 71646606 71646613 1.0E-05 TGAGTCAT 8 V_MTF1_06_M02882 TRANSFAC - 71650538 71650551 5.0E-06 ATTTAACAAAAATG 14 V_GABPBETA_Q3_M01876 TRANSFAC + 71645935 71645945 8.0E-06 ACAGGAAGTTA 11 V_MYF6_04_M02885 TRANSFAC - 71651171 71651185 7.0E-06 GGAGACAGCCGCACA 15 V_FAC1_01_M00456 TRANSFAC - 71651294 71651307 0.0E+00 ACACACAACACACA 14 V_BRN4_01_M01473 TRANSFAC + 71646428 71646444 9.0E-06 GTGTAATAAATTACCTA 17 V_HNF1_01_M00132 TRANSFAC - 71646428 71646442 4.0E-06 GGTAATTTATTACAC 15 V_ZBTB3_03_M02825 TRANSFAC - 71645888 71645904 0.0E+00 AATCCCACTGCATTTGC 17 V_OCT1_Q6_M00195 TRANSFAC - 71646610 71646624 2.0E-06 AGACATGTAAATGAG 15 V_TEF1_Q6_03_M01817 TRANSFAC - 71649137 71649145 3.0E-06 GAGGAATGT 9 V_ZFP206_01_M01742 TRANSFAC - 71650919 71650929 4.0E-06 TGCGCAGGCGT 11 V_FRA1_Q5_M01267 TRANSFAC - 71646606 71646613 1.0E-05 TGAGTCAT 8 V_PBX1_02_M00124 TRANSFAC + 71645875 71645889 6.0E-06 CCAATCAATCCAAGC 15 V_E47_01_M00002 TRANSFAC - 71646302 71646316 1.0E-05 CCCACAGGTGTGCCT 15 V_OCT1_06_M00162 TRANSFAC - 71646317 71646330 2.0E-06 CAAACTTTCATATT 14 V_OCT1_06_M00162 TRANSFAC + 71646610 71646623 7.0E-06 CTCATTTACATGTC 14 V_TBX5_Q5_M01044 TRANSFAC + 71649120 71649129 3.0E-06 CTCACACCTG 10 V_IRX2_01_M01405 TRANSFAC - 71646611 71646627 5.0E-06 AGTAGACATGTAAATGA 17 V_PBX_Q3_M00998 TRANSFAC - 71645873 71645884 7.0E-06 GATTGATTGGTA 12 V_NFKAPPAB_01_M00054 TRANSFAC + 71651502 71651511 9.0E-06 GGGGATTCCC 10 V_SOX14_04_M02901 TRANSFAC - 71649104 71649120 9.0E-06 GTGTTGAGTGGGAGATT 17 V_SRF_06_M02916 TRANSFAC - 71651352 71651368 9.0E-06 GTTCAAAAAAATCCAGC 17 V_YY1_01_M00059 TRANSFAC + 71650532 71650548 6.0E-06 GCTCTCCATTTTTGTTA 17 V_PR_02_M00957 TRANSFAC - 71645842 71645868 2.0E-06 AGATTGATAAAAGGATGTTCTTTGACA 27 V_CREB_02_M00113 TRANSFAC - 71650736 71650747 8.0E-06 TGGGTGACGCCA 12 V_HOXA10_01_M01464 TRANSFAC + 71646427 71646442 8.0E-06 TGTGTAATAAATTACC 16 V_HOXA10_01_M01464 TRANSFAC - 71646429 71646444 4.0E-06 TAGGTAATTTATTACA 16 V_HNF1A_01_M02162 TRANSFAC - 71646429 71646442 5.0E-06 GGTAATTTATTACA 14 V_PBX1_04_M01357 TRANSFAC + 71645872 71645888 9.0E-06 TTACCAATCAATCCAAG 17 V_AR_01_M00481 TRANSFAC + 71651086 71651100 7.0E-06 GGGACATTTTGTCCT 15 V_HOXC9_01_M01416 TRANSFAC + 71646426 71646441 8.0E-06 CTGTGTAATAAATTAC 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.