Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MTCH1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 23787 mitochondrial carrier 1 chr6 - 36953827 - 36959327 36954327 Transcription Factor Binding Sites   Download all TFBS in the MTCH1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HOXD12_homeodomain_DBD_monomeric_9_1 SELEX + 36954927 36954935 4.0E-06 GCAATAAAA 9 SP8_C2H2_DBD_monomeric_12_1 SELEX + 36953989 36954000 1.0E-06 GCCACGCCCCCT 12 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX + 36954927 36954936 7.0E-06 GCAATAAAAG 10 GABPA_MA0062.2 JASPAR - 36953924 36953934 0.0E+00 CCGGAAGTGGC 11 SP3_C2H2_DBD_monomeric_11_1 SELEX + 36953989 36953999 3.0E-06 GCCACGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 36953989 36953999 1.0E-06 GCCACGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 36954012 36954022 1.0E-05 GCCCCGCCCCC 11 ELF4_ETS_full_monomeric_12_1 SELEX - 36953926 36953937 1.0E-06 GACCCGGAAGTG 12 KLF14_C2H2_DBD_monomeric_14_1 SELEX + 36953988 36954001 0.0E+00 GGCCACGCCCCCTC 14 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX + 36953976 36953985 2.0E-06 GTCACGTGAC 10 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX - 36953976 36953985 2.0E-06 GTCACGTGAC 10 RARG_nuclearreceptor_full_dimeric_17_1 SELEX + 36953963 36953979 1.0E-05 GAGGTCACTCCCCGTCA 17 KLF13_C2H2_full_monomeric_18_1 SELEX + 36953987 36954004 9.0E-06 GGGCCACGCCCCCTCACC 18 ZNF238_C2H2_full_monomeric_13_1 SELEX + 36954515 36954527 9.0E-06 AATCCAGATGTCC 13 USF1_bHLH_DBD_dimeric_10_1 SELEX + 36953976 36953985 3.0E-06 GTCACGTGAC 10 USF1_bHLH_DBD_dimeric_10_1 SELEX - 36953976 36953985 3.0E-06 GTCACGTGAC 10 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX + 36953990 36954005 2.0E-06 CCACGCCCCCTCACCG 16 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX + 36954927 36954935 3.0E-06 GCAATAAAA 9 ELF3_ETS_full_monomeric_13_1 SELEX - 36953925 36953937 1.0E-06 GACCCGGAAGTGG 13 BHLHE41_bHLH_full_dimeric_10_1 SELEX + 36953976 36953985 1.0E-06 GTCACGTGAC 10 BHLHE41_bHLH_full_dimeric_10_1 SELEX - 36953976 36953985 1.0E-06 GTCACGTGAC 10 SREBF2_bHLH_DBD_dimeric_10_1 SELEX + 36953976 36953985 3.0E-06 GTCACGTGAC 10 SREBF2_bHLH_DBD_dimeric_10_1 SELEX - 36953976 36953985 3.0E-06 GTCACGTGAC 10 SP1_MA0079.2 JASPAR + 36952823 36952832 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR + 36952852 36952861 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR + 36952879 36952888 9.0E-06 CCCCTCCTCC 10 SP1_MA0079.2 JASPAR - 36954012 36954021 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 36954234 36954243 7.0E-06 CCCCGCCCCC 10 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX + 36953976 36953985 3.0E-06 GTCACGTGAC 10 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX - 36953976 36953985 3.0E-06 GTCACGTGAC 10 SP4_C2H2_full_monomeric_17_1 SELEX + 36953986 36954002 3.0E-06 GGGGCCACGCCCCCTCA 17 SP4_C2H2_full_monomeric_17_1 SELEX - 36954009 36954025 6.0E-06 CCGGCCCCGCCCCCTGA 17 Srebf1_bHLH_DBD_dimeric_10_1 SELEX + 36953976 36953985 3.0E-06 GTCACGTGAC 10 Srebf1_bHLH_DBD_dimeric_10_1 SELEX - 36953976 36953985 3.0E-06 GTCACGTGAC 10 TFEB_bHLH_full_dimeric_10_1 SELEX + 36953976 36953985 3.0E-06 GTCACGTGAC 10 TFEB_bHLH_full_dimeric_10_1 SELEX - 36953976 36953985 3.0E-06 GTCACGTGAC 10 SP1_C2H2_DBD_monomeric_11_1 SELEX + 36953989 36953999 5.0E-06 GCCACGCCCCC 11 SP1_C2H2_DBD_monomeric_11_1 SELEX - 36954234 36954244 4.0E-06 ACCCCGCCCCC 11 PRDM4_C2H2_full_monomeric_13_1 SELEX + 36952658 36952670 4.0E-06 TTTCAATACTCCC 13 Klf12_C2H2_DBD_monomeric_15_1 SELEX + 36953988 36954002 5.0E-06 GGCCACGCCCCCTCA 15 Hoxa11_homeodomain_DBD_monomeric_12_1 SELEX + 36954591 36954602 7.0E-06 GGTTGTAAAATT 12 Evi1_MA0029.1 JASPAR + 36954833 36954846 7.0E-06 AAGATAGGACAGCA 14 Hltf_MA0109.1 JASPAR - 36954930 36954939 2.0E-06 AAACTTTTAT 10 EHF_ETS_full_monomeric_12_1 SELEX - 36953926 36953937 2.0E-06 GACCCGGAAGTG 12 ELF5_ETS_full_monomeric_11_1 SELEX - 36953926 36953936 2.0E-06 ACCCGGAAGTG 11 TFE3_bHLH_DBD_dimeric_10_1 SELEX + 36953976 36953985 4.0E-06 GTCACGTGAC 10 TFE3_bHLH_DBD_dimeric_10_1 SELEX - 36953976 36953985 4.0E-06 GTCACGTGAC 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX + 36953976 36953985 8.0E-06 GTCACGTGAC 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX - 36953976 36953985 8.0E-06 GTCACGTGAC 10 ELF1_ETS_full_monomeric_12_1 SELEX - 36953926 36953937 6.0E-06 GACCCGGAAGTG 12 ELF3_ETS_DBD_monomeric_12_1 SELEX - 36953926 36953937 1.0E-06 GACCCGGAAGTG 12 ETV6_ETS_full_dimeric_15_1 SELEX - 36952734 36952748 4.0E-06 GAGGAAATGGAAGTC 15 ETV6_ETS_full_dimeric_15_1 SELEX - 36953926 36953940 2.0E-06 TCGGACCCGGAAGTG 15 MLX_bHLH_full_dimeric_10_1 SELEX + 36953976 36953985 5.0E-06 GTCACGTGAC 10 MLX_bHLH_full_dimeric_10_1 SELEX - 36953976 36953985 5.0E-06 GTCACGTGAC 10 HOXC12_homeodomain_DBD_monomeric_11_1 SELEX + 36954591 36954601 8.0E-06 GGTTGTAAAAT 11 CDX2_homeodomain_DBD_monomeric_9_1 SELEX + 36954927 36954935 3.0E-06 GCAATAAAA 9 ARNTL_bHLH_DBD_dimeric_10_1 SELEX + 36953976 36953985 1.0E-06 GTCACGTGAC 10 ARNTL_bHLH_DBD_dimeric_10_1 SELEX - 36953976 36953985 1.0E-06 GTCACGTGAC 10 TBX1_TBX_DBD_dimeric_20_1 SELEX + 36954791 36954810 5.0E-06 ACGTGTTGATTTAAGTGTAA 20 CDX1_homeodomain_DBD_monomeric_9_1 SELEX + 36954927 36954935 3.0E-06 GCAATAAAA 9 BHLHB3_bHLH_full_dimeric_10_1 SELEX + 36953976 36953985 2.0E-06 GTCACGTGAC 10 BHLHB3_bHLH_full_dimeric_10_1 SELEX - 36953976 36953985 2.0E-06 GTCACGTGAC 10 Zfx_MA0146.1 JASPAR + 36954363 36954376 5.0E-06 GTCGCCGCGGCCTG 14 V_RUSH1A_02_M01107 TRANSFAC - 36954930 36954939 2.0E-06 AAACTTTTAT 10 V_TAXCREB_01_M00114 TRANSFAC - 36952754 36952768 1.0E-06 GGGGGATGACGCATT 15 V_KLF15_Q2_M01714 TRANSFAC - 36952818 36952831 3.0E-06 GGGGAGGGGAGTGG 14 V_TEL1_02_M02070 TRANSFAC - 36953926 36953935 5.0E-06 CCCGGAAGTG 10 V_USF_Q6_M00187 TRANSFAC + 36953976 36953985 4.0E-06 GTCACGTGAC 10 V_USF_Q6_M00187 TRANSFAC - 36953976 36953985 4.0E-06 GTCACGTGAC 10 V_TCFE2A_04_M02927 TRANSFAC + 36954514 36954530 1.0E-06 AAATCCAGATGTCCCCT 17 V_ZFX_01_M01593 TRANSFAC + 36954035 36954050 2.0E-06 CTCCAGGCCGCGGGGG 16 V_ZFX_01_M01593 TRANSFAC + 36954194 36954209 3.0E-06 CCGCAGGCCGGGGCGC 16 V_NERF_01_M01976 TRANSFAC - 36953926 36953935 9.0E-06 CCCGGAAGTG 10 V_SP1_Q6_01_M00931 TRANSFAC + 36954013 36954022 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 36954235 36954244 7.0E-06 GGGGCGGGGT 10 V_SP1_03_M02281 TRANSFAC + 36952823 36952832 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC + 36952852 36952861 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC + 36952879 36952888 9.0E-06 CCCCTCCTCC 10 V_SP1_03_M02281 TRANSFAC - 36954012 36954021 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 36954234 36954243 7.0E-06 CCCCGCCCCC 10 V_HFH4_01_M00742 TRANSFAC + 36954596 36954608 5.0E-06 TAAAATTTGTTTT 13 V_PU1_Q4_M01172 TRANSFAC + 36952734 36952752 2.0E-06 GACTTCCATTTCCTCCTCC 19 V_NFAT2_01_M01748 TRANSFAC - 36954472 36954480 2.0E-06 ATGGAAAAT 9 V_LXRB_RXRA_Q5_M02021 TRANSFAC + 36954139 36954153 7.0E-06 GGGGGTCAATGGTGG 15 V_NRSE_B_M00325 TRANSFAC + 36953636 36953656 7.0E-06 AGCAGCTTCACGTAGAGCAGG 21 V_ELF2_02_M02054 TRANSFAC - 36953926 36953935 8.0E-06 CCCGGAAGTG 10 V_GC_01_M00255 TRANSFAC + 36954011 36954024 0.0E+00 AGGGGGCGGGGCCG 14 V_SREBP1_01_M00220 TRANSFAC + 36953975 36953985 5.0E-06 CGTCACGTGAC 11 V_SREBP1_01_M00220 TRANSFAC - 36953976 36953986 5.0E-06 CGTCACGTGAC 11 V_SP4_03_M02810 TRANSFAC + 36953988 36954004 1.0E-06 GGCCACGCCCCCTCACC 17 V_ZBP89_Q4_M01816 TRANSFAC + 36952824 36952833 4.0E-06 CCCTCCCCCA 10 V_SP1_Q6_M00196 TRANSFAC + 36954011 36954023 0.0E+00 AGGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC + 36954233 36954245 3.0E-06 CGGGGGCGGGGTT 13 V_MAZ_Q6_01_M02023 TRANSFAC - 36952819 36952832 0.0E+00 GGGGGAGGGGAGTG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 36952878 36952891 6.0E-06 GTAGGAGGAGGGGA 14 V_AP2BETA_Q3_M01858 TRANSFAC + 36954129 36954144 5.0E-06 GCTGCGGGCCGGGGGT 16 V_EGR1_Q6_M01873 TRANSFAC + 36954232 36954241 4.0E-06 GCGGGGGCGG 10 V_CDX2_Q5_M00729 TRANSFAC - 36954591 36954604 7.0E-06 CAAATTTTACAACC 14 V_HNF1_Q6_01_M01011 TRANSFAC - 36954699 36954719 3.0E-06 ATTAACTAAGAATCAACTACA 21 V_GADP_01_M01258 TRANSFAC + 36953926 36953937 1.0E-06 CACTTCCGGGTC 12 V_NFE4_Q5_M02105 TRANSFAC + 36954544 36954555 5.0E-06 CACCCTCCCCAG 12 V_NKX3A_01_M00451 TRANSFAC + 36954799 36954810 1.0E-05 ATTTAAGTGTAA 12 V_PROP1_02_M01320 TRANSFAC - 36954706 36954722 7.0E-06 TGTATTAACTAAGAATC 17 V_TEL1_01_M01993 TRANSFAC - 36953926 36953935 5.0E-06 CCCGGAAGTG 10 V_SP1_01_M00008 TRANSFAC + 36954235 36954244 3.0E-06 GGGGCGGGGT 10 V_ELF4_01_M01979 TRANSFAC - 36953926 36953935 4.0E-06 CCCGGAAGTG 10 V_FOXO1_Q5_M01216 TRANSFAC - 36954601 36954609 8.0E-06 CAAAACAAA 9 V_SP4_Q5_M01273 TRANSFAC - 36954012 36954022 1.0E-06 GCCCCGCCCCC 11 V_ELF1_Q6_M00746 TRANSFAC - 36952741 36952752 7.0E-06 GGAGGAGGAAAT 12 V_EHF_06_M02745 TRANSFAC - 36953925 36953939 4.0E-06 CGGACCCGGAAGTGG 15 V_FAC1_01_M00456 TRANSFAC - 36954599 36954612 7.0E-06 GAGCAAAACAAATT 14 V_STRA13_01_M00985 TRANSFAC + 36953974 36953987 2.0E-06 CCGTCACGTGACGG 14 V_STRA13_01_M00985 TRANSFAC - 36953974 36953987 2.0E-06 CCGTCACGTGACGG 14 V_TFEB_01_M01768 TRANSFAC + 36953976 36953985 3.0E-06 GTCACGTGAC 10 V_TFEB_01_M01768 TRANSFAC - 36953976 36953985 3.0E-06 GTCACGTGAC 10 V_FOXL1_02_M02857 TRANSFAC - 36954598 36954613 2.0E-06 AGAGCAAAACAAATTT 16 V_FOXJ3_06_M02855 TRANSFAC - 36954598 36954614 0.0E+00 TAGAGCAAAACAAATTT 17 V_PLAG1_01_M01778 TRANSFAC - 36952771 36952786 7.0E-06 GAGGCTTTAAGCGGGG 16 V_TCF1_06_M02815 TRANSFAC - 36954708 36954724 6.0E-06 CTTGTATTAACTAAGAA 17 V_LMO2COM_02_M00278 TRANSFAC - 36952841 36952849 7.0E-06 CAGATAGGG 9 V_ZFP281_01_M01597 TRANSFAC - 36952823 36952833 1.0E-06 TGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 36952852 36952862 2.0E-06 GGGGGGAGGGG 11 V_EGR1_06_M02744 TRANSFAC - 36954229 36954242 4.0E-06 CCCGCCCCCGCGTG 14 V_OCT1_07_M00248 TRANSFAC - 36952656 36952667 4.0E-06 AGTATTGAAATT 12 V_ZFP281_04_M02831 TRANSFAC + 36952851 36952865 3.0E-06 TCCCCTCCCCCCATA 15 V_ELF_02_M02053 TRANSFAC - 36953926 36953935 1.0E-05 CCCGGAAGTG 10 V_SP1_Q2_01_M00933 TRANSFAC - 36954012 36954021 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC - 36954234 36954243 4.0E-06 CCCCGCCCCC 10 V_UF1H3BETA_Q6_M01068 TRANSFAC - 36952822 36952835 6.0E-06 ATTGGGGGAGGGGA 14 V_HOXA10_01_M01464 TRANSFAC + 36954924 36954939 4.0E-06 TTCGCAATAAAAGTTT 16 V_SP1_Q4_01_M00932 TRANSFAC + 36954011 36954023 0.0E+00 AGGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC + 36954233 36954245 6.0E-06 CGGGGGCGGGGTT 13 V_RNF96_01_M01199 TRANSFAC - 36954128 36954137 7.0E-06 GCCCGCAGCC 10 V_GLIS2_04_M02863 TRANSFAC - 36954709 36954722 5.0E-06 TGTATTAACTAAGA 14 V_T3RALPHA_Q6_M01724 TRANSFAC - 36952720 36952730 8.0E-06 GTTGGGGTCAG 11

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.