Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

LRRC6 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 23639 leucine rich repeat containing 6 chr8 - 133687363 - 133692863 133687863 Transcription Factor Binding Sites   Download all TFBS in the LRRC6 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX - 133687797 133687810 3.0E-06 GGGGTGAAGGGTGA 14 Creb3l2_bZIP_DBD_dimeric_12_1 SELEX + 133689373 133689384 4.0E-06 TGACACGTGACA 12 Creb3l2_bZIP_DBD_dimeric_12_1 SELEX - 133689373 133689384 4.0E-06 TGTCACGTGTCA 12 EMX2_homeodomain_DBD_dimeric_14_1 SELEX + 133688263 133688276 0.0E+00 TAATTAGATAATTT 14 EMX2_homeodomain_DBD_dimeric_14_1 SELEX - 133688263 133688276 0.0E+00 AAATTATCTAATTA 14 Arx_homeodomain_DBD_dimeric_13_1 SELEX + 133688262 133688274 2.0E-06 TTAATTAGATAAT 13 Arx_homeodomain_DBD_dimeric_13_1 SELEX - 133688262 133688274 2.0E-06 ATTATCTAATTAA 13 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 133689326 133689342 4.0E-06 GACAATATGGGTAAACA 17 NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX - 133688106 133688114 2.0E-06 AAAAGTCAA 9 RFX4_RFX_DBD_dimeric_16_1 SELEX + 133687840 133687855 5.0E-06 AGGAGCCATGGCAACG 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 133687840 133687855 7.0E-06 CGTTGCCATGGCTCCT 16 LHX2_homeodomain_DBD_dimeric_15_1 SELEX - 133688263 133688277 8.0E-06 CAAATTATCTAATTA 15 Alx1_homeodomain_DBD_dimeric_13_1 SELEX + 133688262 133688274 5.0E-06 TTAATTAGATAAT 13 Alx1_homeodomain_DBD_dimeric_13_1 SELEX - 133688262 133688274 2.0E-06 ATTATCTAATTAA 13 Pknox2_MEIS_DBD_dimeric_12_1 SELEX + 133689373 133689384 9.0E-06 TGACACGTGACA 12 ISX_homeodomain_DBD_dimeric_13_1 SELEX - 133688262 133688274 0.0E+00 ATTATCTAATTAA 13 Pax4_MA0068.1 JASPAR + 133688281 133688310 1.0E-05 GAATGAAAGACACTATGAAAACAACAGGCT 30 USF1_bHLH_DBD_dimeric_10_1 SELEX + 133689374 133689383 9.0E-06 GACACGTGAC 10 PROP1_homeodomain_full_dimeric_11_1 SELEX - 133688263 133688273 3.0E-06 TTATCTAATTA 11 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 133687840 133687855 4.0E-06 AGGAGCCATGGCAACG 16 POU6F2_POU_DBD_dimeric_16_1 SELEX + 133688262 133688277 0.0E+00 TTAATTAGATAATTTG 16 POU6F2_POU_DBD_dimeric_16_1 SELEX - 133688262 133688277 2.0E-06 CAAATTATCTAATTAA 16 ALX3_homeodomain_full_dimeric_13_1 SELEX + 133688262 133688274 4.0E-06 TTAATTAGATAAT 13 ALX3_homeodomain_full_dimeric_13_1 SELEX - 133688262 133688274 1.0E-06 ATTATCTAATTAA 13 SOX2_HMG_full_dimeric_15_1 SELEX - 133688279 133688293 4.0E-06 GTGTCTTTCATTCAC 15 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 133689393 133689406 1.0E-05 GTAATCAGACATCA 14 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX - 133688107 133688120 5.0E-06 AAAGGAAAAAGTCA 14 DRGX_homeodomain_DBD_dimeric_13_1 SELEX - 133688262 133688274 1.0E-06 ATTATCTAATTAA 13 PHOX2B_homeodomain_full_dimeric_11_1 SELEX - 133688263 133688273 3.0E-06 TTATCTAATTA 11 Alx4_homeodomain_DBD_dimeric_13_1 SELEX + 133688262 133688274 4.0E-06 TTAATTAGATAAT 13 Alx4_homeodomain_DBD_dimeric_13_1 SELEX - 133688262 133688274 2.0E-06 ATTATCTAATTAA 13 SOX14_HMG_DBD_dimeric_15_1 SELEX - 133688279 133688293 8.0E-06 GTGTCTTTCATTCAC 15 RFX2_RFX_DBD_dimeric_16_1 SELEX + 133687840 133687855 9.0E-06 AGGAGCCATGGCAACG 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 133687840 133687855 9.0E-06 CGTTGCCATGGCTCCT 16 PRRX1_homeodomain_full_dimeric_11_1 SELEX - 133688263 133688273 1.0E-06 TTATCTAATTA 11 RFX5_RFX_DBD_dimeric_16_3 SELEX + 133687840 133687855 8.0E-06 AGGAGCCATGGCAACG 16 CART1_homeodomain_DBD_dimeric_13_1 SELEX - 133688262 133688274 1.0E-06 ATTATCTAATTAA 13 Uncx_homeodomain_DBD_dimeric_13_1 SELEX - 133688262 133688274 1.0E-06 ATTATCTAATTAA 13 EN1_homeodomain_full_dimeric_14_1 SELEX + 133688263 133688276 0.0E+00 TAATTAGATAATTT 14 CREB3L1_bZIP_full_dimeric_12_1 SELEX + 133689373 133689384 6.0E-06 TGACACGTGACA 12 PHOX2A_homeodomain_DBD_dimeric_11_1 SELEX - 133688263 133688273 2.0E-06 TTATCTAATTA 11 GBX2_homeodomain_DBD_dimeric_14_1 SELEX + 133688263 133688276 7.0E-06 TAATTAGATAATTT 14 GBX2_homeodomain_DBD_dimeric_14_1 SELEX - 133688263 133688276 9.0E-06 AAATTATCTAATTA 14 EMX1_homeodomain_DBD_dimeric_14_1 SELEX + 133688263 133688276 0.0E+00 TAATTAGATAATTT 14 EMX1_homeodomain_DBD_dimeric_14_1 SELEX - 133688263 133688276 0.0E+00 AAATTATCTAATTA 14 ARNTL_bHLH_DBD_dimeric_10_1 SELEX + 133689374 133689383 8.0E-06 GACACGTGAC 10 RREB1_MA0073.1 JASPAR + 133687959 133687978 1.0E-06 CCCCAACCCAAACCCAGTCT 20 V_DBX1_01_M01483 TRANSFAC - 133688260 133688276 1.0E-05 AAATTATCTAATTAAAG 17 V_USF_Q6_M00187 TRANSFAC - 133689374 133689383 4.0E-06 GTCACGTGTC 10 V_TCF3_01_M01594 TRANSFAC + 133688103 133688115 4.0E-06 CCTTTGACTTTTT 13 V_RHOX11_01_M01347 TRANSFAC - 133688127 133688143 1.0E-06 TGGAAGCTGTAAATCAA 17 V_EVI1_04_M00081 TRANSFAC + 133688258 133688272 4.0E-06 AGCTTTAATTAGATA 15 V_LBX2_01_M01401 TRANSFAC - 133688257 133688273 9.0E-06 TTATCTAATTAAAGCTT 17 V_LBX2_01_M01401 TRANSFAC + 133688258 133688274 7.0E-06 AGCTTTAATTAGATAAT 17 V_PROP1_01_M01294 TRANSFAC + 133688263 133688273 3.0E-06 TAATTAGATAA 11 V_MEF2_02_M00231 TRANSFAC + 133688253 133688274 1.0E-06 TGTGAAGCTTTAATTAGATAAT 22 V_NFAT3_Q3_M01734 TRANSFAC + 133688109 133688118 6.0E-06 ACTTTTTCCT 10 V_RP58_01_M00532 TRANSFAC + 133689337 133689348 3.0E-06 TAAACATCTGTG 12 V_ARNT_01_M00236 TRANSFAC - 133689371 133689386 6.0E-06 AGTGTCACGTGTCAGT 16 V_CART1_02_M01362 TRANSFAC + 133688258 133688274 1.0E-06 AGCTTTAATTAGATAAT 17 V_HOXC4_01_M01369 TRANSFAC + 133688258 133688274 7.0E-06 AGCTTTAATTAGATAAT 17 V_HOXA2_01_M01402 TRANSFAC + 133688259 133688274 5.0E-06 GCTTTAATTAGATAAT 16 V_DLX2_01_M01468 TRANSFAC + 133688259 133688274 4.0E-06 GCTTTAATTAGATAAT 16 V_OCTAMER_02_M01477 TRANSFAC - 133688258 133688274 6.0E-06 ATTATCTAATTAAAGCT 17 V_LHX3_01_M01471 TRANSFAC - 133688257 133688273 9.0E-06 TTATCTAATTAAAGCTT 17 V_LHX3_01_M01471 TRANSFAC + 133688258 133688274 1.0E-06 AGCTTTAATTAGATAAT 17 V_PSX1_01_M01435 TRANSFAC - 133688257 133688273 6.0E-06 TTATCTAATTAAAGCTT 17 V_PSX1_01_M01435 TRANSFAC + 133688258 133688274 8.0E-06 AGCTTTAATTAGATAAT 17 V_K2B_01_M01348 TRANSFAC + 133688258 133688274 9.0E-06 AGCTTTAATTAGATAAT 17 V_ALX4_02_M01417 TRANSFAC + 133688258 133688274 1.0E-06 AGCTTTAATTAGATAAT 17 V_ZFP691_03_M02833 TRANSFAC - 133689382 133689398 5.0E-06 ACATCAGTGCTCAGTGT 17 V_LDSPOLYA_B_M00317 TRANSFAC - 133688281 133688296 4.0E-06 ATAGTGTCTTTCATTC 16 V_PAX7_01_M01339 TRANSFAC + 133688258 133688274 4.0E-06 AGCTTTAATTAGATAAT 17 V_CART1_03_M01453 TRANSFAC + 133688258 133688274 3.0E-06 AGCTTTAATTAGATAAT 17 V_VSX1_01_M01335 TRANSFAC - 133688257 133688273 8.0E-06 TTATCTAATTAAAGCTT 17 V_VSX1_01_M01335 TRANSFAC + 133688258 133688274 3.0E-06 AGCTTTAATTAGATAAT 17 V_RHOX11_02_M01384 TRANSFAC - 133688127 133688143 2.0E-06 TGGAAGCTGTAAATCAA 17 V_TRF1_01_M01237 TRANSFAC + 133687598 133687612 7.0E-06 GTGGGGTTAGGGTCC 15 V_HELIOSA_02_M01004 TRANSFAC - 133688111 133688121 0.0E+00 AAAAGGAAAAA 11 V_LMX1_01_M01409 TRANSFAC + 133688258 133688274 1.0E-06 AGCTTTAATTAGATAAT 17 V_ARX_01_M01423 TRANSFAC + 133688257 133688273 9.0E-06 AAGCTTTAATTAGATAA 17 V_ARX_01_M01423 TRANSFAC - 133688258 133688274 3.0E-06 ATTATCTAATTAAAGCT 17 V_NFAT_Q6_M00302 TRANSFAC - 133688110 133688121 4.0E-06 AAAAGGAAAAAG 12 V_XFD3_01_M00269 TRANSFAC + 133689333 133689346 5.0E-06 TGGGTAAACATCTG 14 V_HOXA1_01_M01487 TRANSFAC - 133688259 133688274 5.0E-06 ATTATCTAATTAAAGC 16 V_PAX4_05_M01385 TRANSFAC - 133688257 133688273 2.0E-06 TTATCTAATTAAAGCTT 17 V_PAX4_05_M01385 TRANSFAC + 133688258 133688274 4.0E-06 AGCTTTAATTAGATAAT 17 V_GSH2_01_M01326 TRANSFAC + 133688259 133688274 2.0E-06 GCTTTAATTAGATAAT 16 V_MEF2_03_M00232 TRANSFAC + 133688253 133688274 1.0E-06 TGTGAAGCTTTAATTAGATAAT 22 V_JUNDM2_04_M02876 TRANSFAC + 133689398 133689413 7.0E-06 TCTGATTACTCACAAA 16 V_RAX_01_M01389 TRANSFAC + 133688258 133688274 3.0E-06 AGCTTTAATTAGATAAT 17 V_OCT1_08_M01354 TRANSFAC + 133688257 133688272 4.0E-06 AAGCTTTAATTAGATA 16 V_UNCX4.1_01_M01458 TRANSFAC - 133688258 133688274 2.0E-06 ATTATCTAATTAAAGCT 17 V_HBP1_03_M02762 TRANSFAC + 133688276 133688291 4.0E-06 TGAGTGAATGAAAGAC 16 V_SOX12_04_M02900 TRANSFAC - 133688113 133688128 4.0E-06 AAACACAAAAAGGAAA 16 V_WHN_B_M00332 TRANSFAC + 133687786 133687796 0.0E+00 AATGACGCTTT 11 V_RREB1_01_M00257 TRANSFAC + 133687959 133687972 1.0E-06 CCCCAACCCAAACC 14 V_ARID3A_04_M02735 TRANSFAC + 133688258 133688274 3.0E-06 AGCTTTAATTAGATAAT 17 V_PROP1_02_M01320 TRANSFAC + 133688258 133688274 4.0E-06 AGCTTTAATTAGATAAT 17 V_ARX_02_M02945 TRANSFAC + 133688257 133688273 9.0E-06 AAGCTTTAATTAGATAA 17 V_ARX_02_M02945 TRANSFAC - 133688258 133688274 3.0E-06 ATTATCTAATTAAAGCT 17 V_LIM1_01_M01418 TRANSFAC + 133688258 133688274 0.0E+00 AGCTTTAATTAGATAAT 17 V_HOXB4_01_M01424 TRANSFAC + 133688258 133688274 5.0E-06 AGCTTTAATTAGATAAT 17 V_TFIII_Q6_M00706 TRANSFAC + 133687260 133687268 6.0E-06 AGAGGGAGG 9 V_PTF1BETA_Q6_M00657 TRANSFAC + 133687624 133687637 2.0E-06 GGGGAACCGACAGC 14 V_EN2_01_M01455 TRANSFAC + 133688258 133688274 4.0E-06 AGCTTTAATTAGATAAT 17 V_SHOX2_01_M01415 TRANSFAC - 133688257 133688273 6.0E-06 TTATCTAATTAAAGCTT 17 V_SHOX2_01_M01415 TRANSFAC + 133688258 133688274 1.0E-06 AGCTTTAATTAGATAAT 17 V_FAC1_01_M00456 TRANSFAC - 133688115 133688128 9.0E-06 AAACACAAAAAGGA 14 V_TAL1ALPHAE47_01_M00066 TRANSFAC - 133689336 133689351 9.0E-06 GACCACAGATGTTTAC 16 V_RHOX11_05_M03099 TRANSFAC - 133688127 133688143 2.0E-06 TGGAAGCTGTAAATCAA 17 V_LMX1B_01_M01363 TRANSFAC + 133688257 133688273 7.0E-06 AAGCTTTAATTAGATAA 17 V_LMX1B_01_M01363 TRANSFAC - 133688258 133688274 1.0E-06 ATTATCTAATTAAAGCT 17 V_ALX4_03_M02944 TRANSFAC + 133688258 133688274 1.0E-06 AGCTTTAATTAGATAAT 17 V_HOXC5_01_M01454 TRANSFAC + 133688258 133688274 4.0E-06 AGCTTTAATTAGATAAT 17 V_CHX10_01_M00437 TRANSFAC + 133688260 133688273 9.0E-06 CTTTAATTAGATAA 14 V_ESX1_01_M01474 TRANSFAC + 133688257 133688273 6.0E-06 AAGCTTTAATTAGATAA 17 V_ESX1_01_M01474 TRANSFAC - 133688258 133688274 3.0E-06 ATTATCTAATTAAAGCT 17 V_VAX1_01_M01397 TRANSFAC + 133688259 133688274 6.0E-06 GCTTTAATTAGATAAT 16 V_RFX3_05_M02892 TRANSFAC + 133687340 133687362 8.0E-06 ATTGCGGCTTGGAGACAGTGACT 23 V_ALX3_01_M01355 TRANSFAC + 133688258 133688274 6.0E-06 AGCTTTAATTAGATAAT 17 V_NKX12_01_M01427 TRANSFAC - 133688258 133688274 8.0E-06 ATTATCTAATTAAAGCT 17 V_MOX1_01_M01443 TRANSFAC + 133688259 133688274 2.0E-06 GCTTTAATTAGATAAT 16 V_LHX9_01_M01367 TRANSFAC + 133688258 133688274 3.0E-06 AGCTTTAATTAGATAAT 17 V_S8_02_M01376 TRANSFAC + 133688258 133688274 8.0E-06 AGCTTTAATTAGATAAT 17 V_HOXD3_01_M01338 TRANSFAC - 133688259 133688274 4.0E-06 ATTATCTAATTAAAGC 16 V_MYCMAX_03_M00615 TRANSFAC + 133689369 133689388 3.0E-06 ACACTGACACGTGACACTGA 20 V_MYCMAX_03_M00615 TRANSFAC - 133689369 133689388 3.0E-06 TCAGTGTCACGTGTCAGTGT 20 V_LHX5_01_M01353 TRANSFAC - 133688257 133688273 8.0E-06 TTATCTAATTAAAGCTT 17 V_LHX5_01_M01353 TRANSFAC + 133688258 133688274 1.0E-06 AGCTTTAATTAGATAAT 17 V_OG2_02_M01441 TRANSFAC + 133688258 133688274 7.0E-06 AGCTTTAATTAGATAAT 17 V_ALX3_02_M02943 TRANSFAC + 133688258 133688274 6.0E-06 AGCTTTAATTAGATAAT 17 V_RHOX11_06_M03100 TRANSFAC - 133688127 133688143 1.0E-06 TGGAAGCTGTAAATCAA 17 V_HOXB5_01_M01319 TRANSFAC + 133688259 133688274 4.0E-06 GCTTTAATTAGATAAT 16 V_RFX1_02_M00281 TRANSFAC + 133687839 133687856 1.0E-06 CAGGAGCCATGGCAACGG 18 V_HOX13_02_M01452 TRANSFAC + 133688259 133688274 4.0E-06 GCTTTAATTAGATAAT 16 V_PPARG_01_M00512 TRANSFAC - 133687793 133687813 1.0E-06 GCAGGGGTGAAGGGTGAAAAG 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.