Search TFs
or Genes
Construction
and Validation
Optimal
Promoter Size
Download Citation and
Contact

TMEM50A


EntrezDescriptionChrom.StrandPromoter
(Start - Stop)
TSS
23585 transmembrane protein 50A chr1 +25659788 - 25665288 25664788

Transcription Factor Binding Sites

 
Download all TFBS in the TMEM50A promoter
 
MotifSourceStrandStartStop PValueMatch
Sequence
Overlap w/
Footprints
CENPB_CENPB_full_monomeric_15_1 SELEX - 25664471 25664485 1.0E-05 CCCGCGTGGTGCAAA 15
LHX6_homeodomain_full_dimeric_16_1 SELEX + 25669578 25669593 0.0E+00 TAATTGGCATTACTTA 16
LHX6_homeodomain_full_dimeric_16_1 SELEX - 25669578 25669593 5.0E-06 TAAGTAATGCCAATTA 16
PDX1_homeodomain_DBD_dimeric_18_1 SELEX + 25669577 25669594 4.0E-06 GTAATTGGCATTACTTAC 18
PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 25669577 25669594 2.0E-06 GTAAGTAATGCCAATTAC 18
ELF4_ETS_full_monomeric_12_1 SELEX - 25663569 25663580 8.0E-06 ATCCAGGAAGTG 12
TBX5_TBX_DBD_dimeric_20_1 SELEX + 25669484 25669503 4.0E-06 AGCTGTTATTTATCCCACCA 20
TBX5_TBX_DBD_dimeric_20_1 SELEX - 25669484 25669503 5.0E-06 TGGTGGGATAAATAACAGCT 20
EWSR1-FLI1_MA0149.1 JASPAR - 25661282 25661299 8.0E-06 GACAGGAGGCAAGGTAGA 18
Lhx8_homeodomain_DBD_dimeric_18_1 SELEX - 25669577 25669594 8.0E-06 GTAAGTAATGCCAATTAC 18
NFIX_NFI_full_monomeric_9_2 SELEX - 25669580 25669588 8.0E-06 AATGCCAAT 9
TBX4_TBX_DBD_dimeric_20_1 SELEX + 25669484 25669503 5.0E-06 AGCTGTTATTTATCCCACCA 20
TBX4_TBX_DBD_dimeric_20_1 SELEX - 25669484 25669503 2.0E-06 TGGTGGGATAAATAACAGCT 20
SOX14_HMG_DBD_dimeric_12_1 SELEX - 25669561 25669572 6.0E-06 ACACTTACATTA 12
TEAD3_TEA_DBD_dimeric_17_1 SELEX + 25669584 25669600 5.0E-06 GCATTACTTACATAGCT 17
Foxd3_MA0041.1 JASPAR + 25664859 25664870 1.0E-05 TTTTGTTTTCTT 12
TBX2_TBX_full_dimeric_18_1 SELEX - 25669485 25669502 8.0E-06 GGTGGGATAAATAACAGC 18
FOXI1_forkhead_full_dimeric_17_1 SELEX + 25665615 25665631 9.0E-06 ATATTTTTGGACAACCA 17
TEAD1_TEA_full_dimeric_17_1 SELEX + 25669584 25669600 4.0E-06 GCATTACTTACATAGCT 17
CPEB1_RRM_full_monomeric_8_1 SELEX + 25669609 25669616 4.0E-06 AATAAAAA 8
SPDEF_ETS_full_monomeric_11_1 SELEX - 25664830 25664840 3.0E-06 ACCCGGATGCA 11
FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 25664858 25664870 8.0E-06 AAGAAAACAAAAC 13
V_DMRT4_01_M01149 TRANSFAC + 25669615 25669627 0.0E+00 AATGTTTCAAATA 13
V_CEBPG_Q6_M00622 TRANSFAC + 25663320 25663332 7.0E-06 TCCATTTAAAAAC 13
V_MEIS1BHOXA9_02_M00421 TRANSFAC - 25669561 25669574 5.0E-06 TGACACTTACATTA 14
V_AP2ALPHA_Q6_M01857 TRANSFAC - 25664985 25664995 9.0E-06 AGCCTGCGGCC 11
V_DBX1_01_M01483 TRANSFAC - 25669442 25669458 8.0E-06 TAAAAAACTAAAACAAA 17
V_TCF3_01_M01594 TRANSFAC + 25664858 25664870 5.0E-06 GTTTTGTTTTCTT 13
V_HSF1_Q6_M01023 TRANSFAC - 25665244 25665260 8.0E-06 TTTCTCGGGGCTTCGGC 17
V_RHOX11_01_M01347 TRANSFAC + 25669480 25669496 8.0E-06 ATGCAGCTGTTATTTAT 17
V_DMRT3_01_M01148 TRANSFAC - 25669613 25669627 0.0E+00 TATTTGAAACATTTT 15
V_SIX6_02_M01398 TRANSFAC + 25665604 25665620 6.0E-06 TGTAGGGTGTCATATTT 17
V_BCL6_01_M01183 TRANSFAC + 25669442 25669457 3.0E-06 TTTGTTTTAGTTTTTT 16
V_FOXO4_02_M00476 TRANSFAC + 25664858 25664871 5.0E-06 GTTTTGTTTTCTTG 14
V_HOXA13_02_M01297 TRANSFAC + 25669608 25669616 4.0E-06 AAATAAAAA 9
V_FOXJ2_02_M00423 TRANSFAC + 25665443 25665456 3.0E-06 AAAATAACACTTAT 14
V_SRY_02_M00160 TRANSFAC - 25664857 25664868 7.0E-06 GAAAACAAAACG 12
V_GCNF_Q3_M02009 TRANSFAC - 25665505 25665514 7.0E-06 CAAGTTCAAT 10
V_AP4_Q6_M00176 TRANSFAC + 25665231 25665240 5.0E-06 CACAGCTGGA 10
V_AFP1_Q6_M00616 TRANSFAC - 25665686 25665696 3.0E-06 AATAACAACAC 11
V_AP4_Q6_01_M00927 TRANSFAC - 25669482 25669490 1.0E-05 AACAGCTGC 9
V_RHOX11_02_M01384 TRANSFAC + 25669480 25669496 8.0E-06 ATGCAGCTGTTATTTAT 17
V_ELF4_04_M02850 TRANSFAC + 25669603 25669619 8.0E-06 CCACAAAATAAAAATGT 17
V_PR_Q2_M00960 TRANSFAC - 25663598 25663607 3.0E-06 GAAAGAACAC 10
V_ZFP105_03_M02827 TRANSFAC + 25669605 25669619 9.0E-06 ACAAAATAAAAATGT 15
V_FOXO1_02_M00474 TRANSFAC + 25664858 25664871 2.0E-06 GTTTTGTTTTCTTG 14
V_CART1_01_M00416 TRANSFAC + 25669575 25669592 1.0E-06 TCGTAATTGGCATTACTT 18
V_CART1_01_M00416 TRANSFAC - 25669575 25669592 2.0E-06 AAGTAATGCCAATTACGA 18
V_SPDEF_03_M02811 TRANSFAC + 25664829 25664844 4.0E-06 CTGCATCCGGGTGTCT 16
V_SIX3_01_M01358 TRANSFAC + 25665604 25665620 9.0E-06 TGTAGGGTGTCATATTT 17
V_SP1_Q6_M00196 TRANSFAC - 25664773 25664785 9.0E-06 GGAGGGCGGGGCG 13
V_FOXK1_04_M02856 TRANSFAC - 25665684 25665698 1.0E-06 CGAATAACAACACCC 15
V_HOXB6_01_M01460 TRANSFAC - 25669574 25669589 7.0E-06 TAATGCCAATTACGAT 16
V_NKX52_01_M01315 TRANSFAC + 25665445 25665461 7.0E-06 AATAACACTTATTGAAT 17
V_IRF3_06_M02871 TRANSFAC + 25665254 25665267 5.0E-06 CGAGAAAGGAGCGT 14
V_GR_Q6_M00192 TRANSFAC + 25663588 25663606 6.0E-06 TTCACCCTCTGTGTTCTTT 19
V_TEL2_Q6_M00678 TRANSFAC + 25663568 25663577 6.0E-06 CCACTTCCTG 10
V_PBX1_05_M01967 TRANSFAC - 25661293 25661306 1.0E-05 CATGACTGACAGGA 14
V_ISGF3G_03_M02771 TRANSFAC + 25665435 25665449 4.0E-06 ATGAACCGAAAATAA 15
V_SMAD4_Q6_M00733 TRANSFAC - 25665307 25665321 9.0E-06 ATGGGGGAGCCACCT 15
V_OCT4_02_M01124 TRANSFAC + 25663342 25663356 4.0E-06 ATTGTCATGCAGTTT 15
V_FOXO1_Q5_M01216 TRANSFAC - 25664860 25664868 5.0E-06 GAAAACAAA 9
V_ZFP105_04_M02931 TRANSFAC - 25665448 25665464 1.0E-06 GCAATTCAATAAGTGTT 17
V_FOXL1_02_M02857 TRANSFAC - 25669439 25669454 4.0E-06 AAACTAAAACAAAGGT 16
V_FOXJ3_06_M02855 TRANSFAC - 25669439 25669455 1.0E-06 AAAACTAAAACAAAGGT 17
V_RHOX11_05_M03099 TRANSFAC + 25669480 25669496 8.0E-06 ATGCAGCTGTTATTTAT 17
V_DMRT7_01_M01151 TRANSFAC + 25669443 25669456 2.0E-06 TTGTTTTAGTTTTT 14
V_DMRT7_01_M01151 TRANSFAC - 25669611 25669624 2.0E-06 TTGAAACATTTTTA 14
V_NRF1_Q6_M00652 TRANSFAC + 25664796 25664805 4.0E-06 CGCATGCGCG 10
V_SIX4_01_M01374 TRANSFAC - 25665604 25665620 0.0E+00 AAATATGACACCCTACA 17
V_LHX61_02_M01422 TRANSFAC + 25663359 25663375 6.0E-06 TCTACTAATCGGCTAAT 17
V_HSF_Q6_M00641 TRANSFAC - 25665247 25665259 1.0E-06 TTCTCGGGGCTTC 13
V_IRC900814_03_M02766 TRANSFAC + 25663511 25663526 8.0E-06 CTTAACGACAATTGAC 16
V_DMRT2_01_M01147 TRANSFAC - 25669613 25669628 2.0E-06 ATATTTGAAACATTTT 16
V_SRF_06_M02916 TRANSFAC - 25669443 25669459 8.0E-06 GTAAAAAACTAAAACAA 17
V_EWSR1FLI1_01_M02252 TRANSFAC - 25661282 25661299 8.0E-06 GACAGGAGGCAAGGTAGA 18
V_SIX6_01_M01345 TRANSFAC + 25665604 25665620 1.0E-05 TGTAGGGTGTCATATTT 17
V_VDR_Q3_M00444 TRANSFAC - 25663580 25663594 9.0E-06 GGGTGAAGGGAGAGA 15
V_YY1_01_M00059 TRANSFAC + 25663316 25663332 4.0E-06 CGTGTCCATTTAAAAAC 17
V_SOX1_03_M02802 TRANSFAC - 25665451 25665466 0.0E+00 CTGCAATTCAATAAGT 16
V_MAFK_04_M02880 TRANSFAC - 25663346 25663360 5.0E-06 GATAAAACTGCATGA 15
V_SP1_Q4_01_M00932 TRANSFAC - 25664773 25664785 9.0E-06 GGAGGGCGGGGCG 13
V_RHOX11_06_M03100 TRANSFAC + 25669480 25669496 8.0E-06 ATGCAGCTGTTATTTAT 17
V_DMRT1_01_M01146 TRANSFAC - 25665641 25665655 2.0E-06 AAGATACTTTGTAGC 15
V_DMRT1_01_M01146 TRANSFAC - 25669610 25669624 1.0E-06 TTGAAACATTTTTAT 15
V_NR2F2_04_M02887 TRANSFAC - 25665263 25665278 1.0E-06 CTGGCCGGGTCACGCT 16
V_PAX4_04_M00380 TRANSFAC + 25665207 25665236 8.0E-06 GGAAAATCCCCCGATCCCCCACTTCACAGC 30
V_DMRT5_01_M01150 TRANSFAC - 25669612 25669626 1.0E-06 ATTTGAAACATTTTT 15
V_PPARA_01_M00242 TRANSFAC - 25669437 25669456 4.0E-06 AAAAACTAAAACAAAGGTGA 20
V_AP2_Q3_M00800 TRANSFAC + 25664985 25665000 9.0E-06 GGCCGCAGGCTGGAGA 16
Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns.
Developed at the Institute for Systems Biology in the Baliga Lab.
A Django site.   Powered by PostgreSQL