Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PSD4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 23550 pleckstrin and Sec7 domain containing 4 chr2 + 113926559 - 113932059 113931559 Transcription Factor Binding Sites   Download all TFBS in the PSD4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 113931040 113931057 6.0E-06 GTAACTAAAAGGCAATTG 18 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX + 113933815 113933826 4.0E-06 TGCCAGGTGTCA 12 NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX + 113931105 113931115 7.0E-06 TTGAAATGTCA 11 LHX2_homeodomain_DBD_dimeric_15_1 SELEX - 113931060 113931074 6.0E-06 TAATAATGCAAATGA 15 RARG_nuclearreceptor_full_dimeric_17_1 SELEX + 113933144 113933160 8.0E-06 AGGGACAGGACAGGTCA 17 POU1F1_POU_DBD_monomeric_14_1 SELEX - 113931059 113931072 0.0E+00 ATAATGCAAATGAT 14 POU1F1_POU_DBD_monomeric_14_1 SELEX - 113932959 113932972 2.0E-06 ATCATGCAAATTTG 14 GATA5_GATA_DBD_monomeric_8_1 SELEX - 113931420 113931427 7.0E-06 AGATAAGA 8 Pknox2_MEIS_DBD_dimeric_12_1 SELEX + 113933815 113933826 3.0E-06 TGCCAGGTGTCA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX + 113933815 113933826 7.0E-06 TGCCAGGTGTCA 12 POU2F2_POU_DBD_monomeric_11_1 SELEX - 113932961 113932971 3.0E-06 TCATGCAAATT 11 POU3F4_POU_DBD_monomeric_9_1 SELEX - 113931062 113931070 7.0E-06 AATGCAAAT 9 GATA4_GATA_DBD_monomeric_8_1 SELEX - 113931420 113931427 7.0E-06 AGATAAGA 8 NR2F1_MA0017.1 JASPAR - 113932048 113932061 7.0E-06 GGACCTTTGGCCAC 14 OTX2_homeodomain_DBD_dimeric_15_1 SELEX + 113931979 113931993 9.0E-06 GCTAATCCTCTTGTG 15 Meis3_MEIS_DBD_dimeric_12_1 SELEX + 113933815 113933826 6.0E-06 TGCCAGGTGTCA 12 POU3F3_POU_DBD_monomeric_13_1 SELEX - 113931060 113931072 2.0E-06 ATAATGCAAATGA 13 POU3F3_POU_DBD_monomeric_13_1 SELEX - 113932960 113932972 1.0E-06 ATCATGCAAATTT 13 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX + 113933144 113933160 6.0E-06 AGGGACAGGACAGGTCA 17 SP1_MA0079.2 JASPAR + 113931835 113931844 9.0E-06 CCCCTCCTCC 10 SOX18_HMG_full_dimeric_15_1 SELEX - 113933783 113933797 9.0E-06 AACAGTGAGTTTGTT 15 SOX7_HMG_full_dimeric_17_1 SELEX - 113933782 113933798 8.0E-06 TAACAGTGAGTTTGTTT 17 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX + 113933144 113933160 1.0E-05 AGGGACAGGACAGGTCA 17 GATA3_GATA_full_monomeric_8_1 SELEX - 113931420 113931427 7.0E-06 AGATAAGA 8 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 113931040 113931057 8.0E-06 GTAACTAAAAGGCAATTG 18 POU3F1_POU_DBD_monomeric_12_1 SELEX - 113931060 113931071 2.0E-06 TAATGCAAATGA 12 POU3F1_POU_DBD_monomeric_12_1 SELEX - 113932960 113932971 4.0E-06 TCATGCAAATTT 12 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 113926663 113926677 1.0E-06 TAGAAGCGAAAGTGA 15 TGIF2LX_MEIS_full_dimeric_12_1 SELEX + 113933815 113933826 2.0E-06 TGCCAGGTGTCA 12 MTF1_C2H2_DBD_monomeric_14_1 SELEX - 113931762 113931775 0.0E+00 GGTGCACACGGCAC 14 POU2F1_POU_DBD_monomeric_12_1 SELEX - 113931061 113931072 5.0E-06 ATAATGCAAATG 12 POU2F1_POU_DBD_monomeric_12_1 SELEX - 113932961 113932972 1.0E-06 ATCATGCAAATT 12 Meis2_MEIS_DBD_dimeric_12_1 SELEX + 113933815 113933826 7.0E-06 TGCCAGGTGTCA 12 Sox11_HMG_DBD_dimeric_15_1 SELEX + 113933783 113933797 6.0E-06 AACAAACTCACTGTT 15 IRF3_IRF_full_trimeric_21_1 SELEX + 113933267 113933287 2.0E-06 CAAAAAGGGAAACAGAGACAG 21 POU3F2_POU_DBD_monomeric_12_1 SELEX - 113931060 113931071 2.0E-06 TAATGCAAATGA 12 POU3F2_POU_DBD_monomeric_12_1 SELEX - 113932960 113932971 4.0E-06 TCATGCAAATTT 12 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 113931040 113931057 6.0E-06 GTAACTAAAAGGCAATTG 18 Sox2_MA0143.1 JASPAR + 113932791 113932805 5.0E-06 CCTTTGTCATTCTGT 15 TGIF1_MEIS_DBD_dimeric_12_1 SELEX + 113933815 113933826 5.0E-06 TGCCAGGTGTCA 12 RREB1_MA0073.1 JASPAR - 113931488 113931507 1.0E-06 CCACAACACACACCCCTCCT 20 Zfx_MA0146.1 JASPAR - 113931257 113931270 0.0E+00 GGGGCCGAGGCCTG 14 V_MEQ_01_M02049 TRANSFAC - 113931495 113931503 7.0E-06 AACACACAC 9 V_OBOX6_01_M01445 TRANSFAC - 113931978 113931992 1.0E-05 ACAAGAGGATTAGCA 15 V_SPI1_01_M01203 TRANSFAC - 113933521 113933537 1.0E-05 AAAATAAGGAACCAAGA 17 V_TCF3_01_M01594 TRANSFAC + 113932791 113932803 6.0E-06 CCTTTGTCATTCT 13 V_FLI1_Q6_M01208 TRANSFAC + 113931576 113931586 7.0E-06 CAGGAAGTGCT 11 V_TCFE2A_04_M02927 TRANSFAC - 113933106 113933122 7.0E-06 AATTACAGATGTTGCTG 17 V_DMRT3_01_M01148 TRANSFAC - 113931035 113931049 6.0E-06 TTTTAGTTACAAAGT 15 V_DMRT3_01_M01148 TRANSFAC - 113931052 113931066 7.0E-06 CAAATGATACAATTG 15 V_ZFX_01_M01593 TRANSFAC + 113931254 113931269 3.0E-06 AACCAGGCCTCGGCCC 16 V_HMGIY_Q3_M01010 TRANSFAC - 113933856 113933870 0.0E+00 AAGGCAATTTCTTTT 15 V_MTF1_Q4_M00650 TRANSFAC - 113931762 113931775 2.0E-06 GGTGCACACGGCAC 14 V_ETS_B_M00340 TRANSFAC + 113931432 113931445 4.0E-06 GGCAGGAAGTGTGA 14 V_OCT1_Q5_01_M00930 TRANSFAC + 113931060 113931070 1.0E-06 TCATTTGCATT 11 V_OCT1_Q5_01_M00930 TRANSFAC + 113932960 113932970 9.0E-06 AAATTTGCATG 11 V_DR4_Q2_M00965 TRANSFAC - 113933144 113933160 3.0E-06 TGACCTGTCCTGTCCCT 17 V_IRF_Q6_01_M00972 TRANSFAC + 113931101 113931111 4.0E-06 AAAATTGAAAT 11 V_IRF_Q6_01_M00972 TRANSFAC + 113933269 113933279 8.0E-06 AAAAGGGAAAC 11 V_SRY_02_M00160 TRANSFAC - 113931113 113931124 6.0E-06 TAAAACAAATGA 12 V_IRF2_Q6_M01882 TRANSFAC - 113926663 113926678 2.0E-06 TTAGAAGCGAAAGTGA 16 V_IRF2_Q6_M01882 TRANSFAC + 113933267 113933282 7.0E-06 CAAAAAGGGAAACAGA 16 V_OCT1_01_M00135 TRANSFAC - 113931057 113931075 8.0E-06 GTAATAATGCAAATGATAC 19 V_OCT1_01_M00135 TRANSFAC - 113932957 113932975 3.0E-06 GCCATCATGCAAATTTGCA 19 V_POU2F3_01_M01476 TRANSFAC - 113931058 113931073 1.0E-06 AATAATGCAAATGATA 16 V_POU2F3_01_M01476 TRANSFAC - 113932958 113932973 3.0E-06 CATCATGCAAATTTGC 16 V_IRF3_05_M02767 TRANSFAC + 113933268 113933281 1.0E-05 AAAAAGGGAAACAG 14 V_SP1_03_M02281 TRANSFAC + 113931835 113931844 9.0E-06 CCCCTCCTCC 10 V_HFH4_01_M00742 TRANSFAC - 113933781 113933793 2.0E-06 GTGAGTTTGTTTT 13 V_OCT_C_M00210 TRANSFAC + 113931059 113931071 1.0E-06 ATCATTTGCATTA 13 V_OCT_C_M00210 TRANSFAC + 113932959 113932971 6.0E-06 CAAATTTGCATGA 13 V_NERF_Q2_M00531 TRANSFAC - 113933828 113933845 3.0E-06 GGGCAGGAAGGAACCCAG 18 V_PPAR_DR1_Q2_M00763 TRANSFAC - 113932049 113932061 9.0E-06 GGACCTTTGGCCA 13 V_E2A_Q2_M00804 TRANSFAC - 113931722 113931735 3.0E-06 CCACCTGCCCCAGC 14 V_PU1_Q4_M01172 TRANSFAC - 113933268 113933286 7.0E-06 TGTCTCTGTTTCCCTTTTT 19 V_GM497_04_M02864 TRANSFAC - 113932944 113932959 1.0E-05 GCACGCACACACACAC 16 V_CEBPB_01_M00109 TRANSFAC - 113931132 113931145 7.0E-06 AAGTTGGGCAATTT 14 V_REX1_01_M01695 TRANSFAC + 113933917 113933926 7.0E-06 TCAGCCATTG 10 V_ETS_Q4_M00771 TRANSFAC + 113926713 113926724 1.0E-06 AACCACTTCCTC 12 V_ZNF219_01_M01122 TRANSFAC - 113932117 113932128 8.0E-06 CACCCCCACCCC 12 V_ROAZ_01_M00467 TRANSFAC + 113933842 113933855 5.0E-06 GCCCCCTTGGGTCA 14 V_GC_01_M00255 TRANSFAC + 113931233 113931246 9.0E-06 AGGAGGTGGGGCCT 14 V_SOX7_03_M02807 TRANSFAC - 113931045 113931066 4.0E-06 CAAATGATACAATTGCCTTTTA 22 V_SOX7_03_M02807 TRANSFAC - 113931107 113931128 7.0E-06 GTTTTAAAACAAATGACATTTC 22 V_CRX_Q4_M00623 TRANSFAC + 113926672 113926684 7.0E-06 CTTCTAATCTCCT 13 V_COUP_01_M00158 TRANSFAC - 113932048 113932061 7.0E-06 GGACCTTTGGCCAC 14 V_RSRFC4_Q2_M00407 TRANSFAC + 113926649 113926665 8.0E-06 ATGTTCAATATAGATCA 17 V_PXRRXR_02_M01153 TRANSFAC - 113932302 113932309 1.0E-05 AGAGTTCA 8 V_TBX5_02_M01020 TRANSFAC + 113931443 113931452 6.0E-06 TGAGGTGTTG 10 V_FOXK1_04_M02856 TRANSFAC - 113931497 113931511 3.0E-06 CTCACCACAACACAC 15 V_IRF3_Q3_M01279 TRANSFAC + 113926663 113926675 3.0E-06 TCACTTTCGCTTC 13 V_IRF3_Q3_M01279 TRANSFAC - 113933270 113933282 1.0E-06 TCTGTTTCCCTTT 13 V_MAZ_Q6_01_M02023 TRANSFAC - 113931834 113931847 3.0E-06 GAGGGAGGAGGGGG 14 V_OCT1_05_M00161 TRANSFAC + 113931059 113931072 0.0E+00 ATCATTTGCATTAT 14 V_IRF_Q6_M00772 TRANSFAC - 113933269 113933283 4.0E-06 CTCTGTTTCCCTTTT 15 V_SOX18_03_M02801 TRANSFAC + 113931112 113931127 3.0E-06 GTCATTTGTTTTAAAA 16 V_SFPI1_04_M02896 TRANSFAC - 113933525 113933538 1.0E-06 TAAAATAAGGAACC 14 V_OCT1_04_M00138 TRANSFAC - 113931055 113931077 0.0E+00 TGGTAATAATGCAAATGATACAA 23 V_PITX3_01_M01343 TRANSFAC - 113931975 113931990 2.0E-06 AAGAGGATTAGCAAGG 16 V_SP1SP3_Q4_M01219 TRANSFAC + 113931834 113931844 1.0E-05 CCCCCTCCTCC 11 V_SOX12_04_M02900 TRANSFAC - 113933923 113933938 6.0E-06 ACACACAGAAAGCAAT 16 V_SPIB_01_M01204 TRANSFAC - 113933521 113933537 2.0E-06 AAAATAAGGAACCAAGA 17 V_TEL2_Q6_M00678 TRANSFAC - 113931434 113931443 8.0E-06 ACACTTCCTG 10 V_RREB1_01_M00257 TRANSFAC - 113931494 113931507 8.0E-06 CCACAACACACACC 14 V_RREB1_01_M00257 TRANSFAC - 113932112 113932125 6.0E-06 CCCCACCCCAAACC 14 V_CDP_02_M00102 TRANSFAC + 113926655 113926669 6.0E-06 AATATAGATCACTTT 15 V_ISGF3G_03_M02771 TRANSFAC - 113926663 113926677 4.0E-06 TAGAAGCGAAAGTGA 15 V_CTCF_01_M01200 TRANSFAC + 113932166 113932185 6.0E-06 TTGGCCATCAGGGGGCTCCC 20 V_BLIMP1_Q6_M01066 TRANSFAC + 113931677 113931692 6.0E-06 GGAGCAGGGAATGTGG 16 V_OCT1_B_M00342 TRANSFAC - 113931061 113931070 5.0E-06 AATGCAAATG 10 V_OCT1_B_M00342 TRANSFAC - 113932961 113932970 4.0E-06 CATGCAAATT 10 V_OCT_Q6_M00795 TRANSFAC + 113931060 113931070 1.0E-06 TCATTTGCATT 11 V_OCT_Q6_M00795 TRANSFAC + 113932960 113932970 7.0E-06 AAATTTGCATG 11 V_ICSBP_Q6_M00699 TRANSFAC - 113926664 113926675 3.0E-06 GAAGCGAAAGTG 12 V_FOXO1_Q5_M01216 TRANSFAC + 113933780 113933788 1.0E-06 AAAAACAAA 9 V_EVI1_06_M00011 TRANSFAC - 113931422 113931430 2.0E-06 ACAAGATAA 9 V_BCL6B_04_M02844 TRANSFAC - 113932112 113932127 1.0E-05 ACCCCCACCCCAAACC 16 V_SOX15_03_M02799 TRANSFAC - 113931110 113931126 2.0E-06 TTTAAAACAAATGACAT 17 V_MYF6_04_M02885 TRANSFAC + 113933780 113933794 7.0E-06 AAAAACAAACTCACT 15 V_FAC1_01_M00456 TRANSFAC - 113931496 113931509 1.0E-06 CACCACAACACACA 14 V_TAL1_01_M01591 TRANSFAC + 113932913 113932925 3.0E-06 CTGTCTTCTCTCT 13 V_TAL1_01_M01591 TRANSFAC - 113933538 113933550 4.0E-06 GTTCCTTTTCTGT 13 V_CEBPA_01_M00116 TRANSFAC + 113931132 113931145 9.0E-06 AAATTGCCCAACTT 14 V_OCT2_01_M01368 TRANSFAC - 113931058 113931073 1.0E-06 AATAATGCAAATGATA 16 V_OCT2_01_M01368 TRANSFAC - 113932958 113932973 2.0E-06 CATCATGCAAATTTGC 16 V_DR1_Q3_M00762 TRANSFAC + 113932049 113932061 8.0E-06 TGGCCAAAGGTCC 13 V_FOXL1_02_M02857 TRANSFAC - 113931113 113931128 7.0E-06 GTTTTAAAACAAATGA 16 V_SIRT6_01_M01797 TRANSFAC - 113931420 113931427 7.0E-06 AGATAAGA 8 V_OCT1_Q6_M00195 TRANSFAC - 113931059 113931073 1.0E-06 AATAATGCAAATGAT 15 V_PITX1_01_M01484 TRANSFAC - 113931976 113931992 5.0E-06 ACAAGAGGATTAGCAAG 17 V_ZBTB4_04_M02929 TRANSFAC - 113931069 113931084 5.0E-06 ATGTCACTGGTAATAA 16 V_ZBTB4_04_M02929 TRANSFAC + 113933787 113933802 6.0E-06 AACTCACTGTTAGAAA 16 V_FPM315_01_M01587 TRANSFAC + 113931480 113931491 7.0E-06 CGGGGAGCAGGA 12 V_FPM315_01_M01587 TRANSFAC - 113931836 113931847 0.0E+00 GAGGGAGGAGGG 12 V_VDR_Q6_M00961 TRANSFAC - 113933040 113933051 4.0E-06 CTGTCTGAACCT 12 V_ETS1_B_M00339 TRANSFAC - 113926711 113926725 0.0E+00 GGAGGAAGTGGTTGG 15 V_ETS1_B_M00339 TRANSFAC + 113931433 113931447 4.0E-06 GCAGGAAGTGTGAGG 15 V_OCT1_07_M00248 TRANSFAC - 113932961 113932972 5.0E-06 ATCATGCAAATT 12 V_IRF1_Q6_01_M01881 TRANSFAC - 113931100 113931113 6.0E-06 ACATTTCAATTTTT 14 V_SOX2_01_M02246 TRANSFAC + 113932791 113932805 5.0E-06 CCTTTGTCATTCTGT 15 V_SRF_06_M02916 TRANSFAC + 113933776 113933792 8.0E-06 GGTGAAAAACAAACTCA 17 V_SATB1_01_M01232 TRANSFAC - 113931038 113931049 3.0E-06 TTTTAGTTACAA 12 V_EKLF_Q5_M01874 TRANSFAC - 113931349 113931358 9.0E-06 CCCCACCCTG 10 V_EKLF_Q5_M01874 TRANSFAC - 113932132 113932141 5.0E-06 CCACACCCAG 10 V_GSC_01_M01428 TRANSFAC + 113931975 113931991 7.0E-06 CCTTGCTAATCCTCTTG 17 V_SOX2_Q6_M01272 TRANSFAC + 113932787 113932802 4.0E-06 GTCCCCTTTGTCATTC 16 V_BSX_01_M01442 TRANSFAC + 113931048 113931063 1.0E-06 AAGGCAATTGTATCAT 16 V_SOX12_03_M02796 TRANSFAC + 113931114 113931127 4.0E-06 CATTTGTTTTAAAA 14 V_SOX15_04_M02903 TRANSFAC - 113931106 113931120 5.0E-06 ACAAATGACATTTCA 15 V_FOXO4_01_M00472 TRANSFAC + 113933780 113933790 3.0E-06 AAAAACAAACT 11 V_UF1H3BETA_Q6_M01068 TRANSFAC + 113933874 113933887 4.0E-06 GCCGGGGGTGGGGC 14 V_CEBP_Q2_01_M00912 TRANSFAC + 113931134 113931145 8.0E-06 ATTGCCCAACTT 12 V_MAFK_04_M02880 TRANSFAC + 113931098 113931112 2.0E-06 ACAAAAATTGAAATG 15 V_TCF11MAFG_01_M00284 TRANSFAC - 113931100 113931121 2.0E-06 AACAAATGACATTTCAATTTTT 22 V_OBOX6_02_M03068 TRANSFAC - 113931978 113931992 1.0E-05 ACAAGAGGATTAGCA 15 V_COUP_DR1_Q6_M00765 TRANSFAC - 113932049 113932061 3.0E-06 GGACCTTTGGCCA 13 V_MTF1_05_M02778 TRANSFAC + 113931762 113931777 3.0E-06 GTGCCGTGTGCACCTG 16 V_SMAD1_01_M01590 TRANSFAC - 113932790 113932801 5.0E-06 AATGACAAAGGG 12 V_DMRT5_01_M01150 TRANSFAC + 113931053 113931067 4.0E-06 AATTGTATCATTTGC 15 V_CEBPA_Q6_M01866 TRANSFAC - 113931133 113931145 3.0E-06 AAGTTGGGCAATT 13 V_GATA1_06_M00347 TRANSFAC - 113931420 113931429 1.0E-05 CAAGATAAGA 10 V_ER_Q6_M00191 TRANSFAC - 113933848 113933866 7.0E-06 CAATTTCTTTTTGACCCAA 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.