Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MACF1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 23499 microtubule-actin crosslinking factor 1 chr1 + 39542088 - 39547588 39547088 Transcription Factor Binding Sites   Download all TFBS in the MACF1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 39542491 39542506 1.0E-06 ATGAATAATTTAGGAC 16 HSF2_HSF_DBD_trimeric_13_1 SELEX + 39542459 39542471 7.0E-06 ATCCAGAAGCTTC 13 HSF2_HSF_DBD_trimeric_13_1 SELEX - 39542464 39542476 1.0E-06 TTCTGGAAGCTTC 13 NFIA_NFI_full_dimeric_15_1 SELEX + 39542338 39542352 1.0E-05 CTGGCCAGCTGCCAG 15 NFIA_NFI_full_dimeric_15_1 SELEX - 39542338 39542352 9.0E-06 CTGGCAGCTGGCCAG 15 POU3F3_POU_DBD_monomeric_12_1 SELEX + 39542491 39542502 0.0E+00 ATGAATAATTTA 12 HSF1_HSF_full_trimeric_13_1 SELEX + 39542459 39542471 7.0E-06 ATCCAGAAGCTTC 13 HSF1_HSF_full_trimeric_13_1 SELEX - 39542464 39542476 1.0E-06 TTCTGGAAGCTTC 13 POU3F2_POU_DBD_monomeric_13_1 SELEX + 39542490 39542502 0.0E+00 CATGAATAATTTA 13 POU3F4_POU_DBD_monomeric_11_1 SELEX + 39542492 39542502 0.0E+00 TGAATAATTTA 11 ISL2_homeodomain_DBD_monomeric_8_1 SELEX - 39542179 39542186 1.0E-05 GCACTTAA 8 POU4F3_POU_DBD_monomeric_16_1 SELEX - 39542488 39542503 2.0E-06 CTAAATTATTCATGCT 16 POU4F3_POU_DBD_monomeric_16_1 SELEX + 39542491 39542506 1.0E-06 ATGAATAATTTAGGAC 16 HSF4_HSF_DBD_trimeric_13_1 SELEX + 39542459 39542471 4.0E-06 ATCCAGAAGCTTC 13 HSF4_HSF_DBD_trimeric_13_1 SELEX - 39542464 39542476 1.0E-06 TTCTGGAAGCTTC 13 SP1_MA0079.2 JASPAR - 39546967 39546976 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 39547056 39547065 7.0E-06 CCCCGCCCCC 10 POU1F1_POU_DBD_monomeric_17_1 SELEX + 39542488 39542504 0.0E+00 AGCATGAATAATTTAGG 17 POU3F1_POU_DBD_monomeric_12_2 SELEX + 39542491 39542502 0.0E+00 ATGAATAATTTA 12 FOXI1_forkhead_full_dimeric_17_1 SELEX + 39542160 39542176 5.0E-06 TTGTGGACGGAAATAAT 17 POU3F3_POU_DBD_dimeric_12_1 SELEX + 39542491 39542502 7.0E-06 ATGAATAATTTA 12 POU4F1_POU_DBD_monomeric_14_1 SELEX - 39542490 39542503 1.0E-06 CTAAATTATTCATG 14 POU4F1_POU_DBD_monomeric_14_1 SELEX + 39542491 39542504 0.0E+00 ATGAATAATTTAGG 14 V_DBX1_01_M01483 TRANSFAC + 39542169 39542185 4.0E-06 GAAATAATTTTTAAGTG 17 V_POU3F3_01_M03090 TRANSFAC + 39542486 39542502 5.0E-06 ACAGCATGAATAATTTA 17 V_HSF1_Q6_M01023 TRANSFAC - 39542461 39542477 0.0E+00 CTTCTGGAAGCTTCTGG 17 V_NF1A_Q6_M02103 TRANSFAC + 39542338 39542353 9.0E-06 CTGGCCAGCTGCCAGT 16 V_ERR3_Q2_01_M02094 TRANSFAC + 39542327 39542339 7.0E-06 GCTCAAGGTTACT 13 V_LRH1_Q5_01_M02098 TRANSFAC + 39542327 39542337 4.0E-06 GCTCAAGGTTA 11 V_ETS_B_M00340 TRANSFAC + 39552074 39552087 3.0E-06 TGGAGGAAGTCCTT 14 V_OCTAMER_01_M01324 TRANSFAC + 39542486 39542502 5.0E-06 ACAGCATGAATAATTTA 17 V_POU1F1_Q6_M00744 TRANSFAC + 39542491 39542500 0.0E+00 ATGAATAATT 10 V_SP1_03_M02281 TRANSFAC - 39546967 39546976 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 39547056 39547065 7.0E-06 CCCCGCCCCC 10 V_NKX24_01_M01350 TRANSFAC - 39542175 39542190 7.0E-06 GCAGGCACTTAAAAAT 16 V_SP1_02_M01303 TRANSFAC + 39546933 39546943 5.0E-06 GGGGTGGGGTG 11 V_SP1_02_M01303 TRANSFAC + 39546968 39546978 3.0E-06 GGGGCGGGGGG 11 V_SP1_02_M01303 TRANSFAC + 39547057 39547067 3.0E-06 GGGGCGGGGGG 11 V_PU1_Q4_M01172 TRANSFAC + 39547187 39547205 3.0E-06 CCCGTCTTCTTCCTCCTTC 19 V_NKX62_Q2_M00489 TRANSFAC + 39542169 39542180 4.0E-06 GAAATAATTTTT 12 V_BCL6_02_M01185 TRANSFAC - 39542421 39542434 3.0E-06 GTCTTTCCAGGGCT 14 V_ZNF219_01_M01122 TRANSFAC - 39546969 39546980 5.0E-06 CGCCCCCCGCCC 12 V_DBX2_01_M01360 TRANSFAC + 39542167 39542182 1.0E-05 CGGAAATAATTTTTAA 16 V_NKX26_01_M01322 TRANSFAC - 39542175 39542190 2.0E-06 GCAGGCACTTAAAAAT 16 V_SP4_03_M02810 TRANSFAC - 39546678 39546694 7.0E-06 CGACCCGCCCCCTTGGA 17 V_SP1_Q6_M00196 TRANSFAC + 39547055 39547067 6.0E-06 GGGGGGCGGGGGG 13 V_NKX22_02_M01372 TRANSFAC - 39542174 39542190 4.0E-06 GCAGGCACTTAAAAATT 17 V_NKX52_01_M01315 TRANSFAC - 39542174 39542190 2.0E-06 GCAGGCACTTAAAAATT 17 V_HMX1_02_M01481 TRANSFAC - 39542174 39542190 6.0E-06 GCAGGCACTTAAAAATT 17 V_ZIC3_05_M02941 TRANSFAC + 39542482 39542496 1.0E-06 ACTCACAGCATGAAT 15 V_POU6F1_01_M00465 TRANSFAC + 39542493 39542503 7.0E-06 GAATAATTTAG 11 V_HNF4A_02_M02868 TRANSFAC + 39542445 39542460 7.0E-06 GTCCTAAGTCCAACAT 16 V_SF1_Q6_01_M01132 TRANSFAC - 39542329 39542337 9.0E-06 TAACCTTGA 9 V_SP4_Q5_M01273 TRANSFAC - 39546967 39546977 5.0E-06 CCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 39547056 39547066 5.0E-06 CCCCCGCCCCC 11 V_ZIC2_05_M02940 TRANSFAC + 39542482 39542496 1.0E-06 ACTCACAGCATGAAT 15 V_NKX25_03_M01414 TRANSFAC - 39542175 39542190 7.0E-06 GCAGGCACTTAAAAAT 16 V_MYOGNF1_01_M00056 TRANSFAC - 39542336 39542364 2.0E-06 AGCTTTTCGCCACTGGCAGCTGGCCAGTA 29 V_HSF_Q6_M00641 TRANSFAC + 39542459 39542471 4.0E-06 ATCCAGAAGCTTC 13 V_HSF_Q6_M00641 TRANSFAC - 39542464 39542476 5.0E-06 TTCTGGAAGCTTC 13 V_HSF_Q6_M00641 TRANSFAC + 39542469 39542481 4.0E-06 TTCCAGAAGCTCC 13 V_LXRA_RXRA_Q3_M00647 TRANSFAC + 39542328 39542342 5.0E-06 CTCAAGGTTACTGGC 15 V_HSF2_02_M01244 TRANSFAC - 39542459 39542471 3.0E-06 GAAGCTTCTGGAT 13 V_HSF2_02_M01244 TRANSFAC + 39542464 39542476 1.0E-06 GAAGCTTCCAGAA 13 V_PAX4_02_M00377 TRANSFAC + 39542493 39542503 6.0E-06 GAATAATTTAG 11 V_CTF1_01_M01196 TRANSFAC - 39542338 39542351 3.0E-06 TGGCAGCTGGCCAG 14 V_SP1_Q2_01_M00933 TRANSFAC - 39546967 39546976 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC - 39547056 39547065 4.0E-06 CCCCGCCCCC 10 V_HMX3_02_M01413 TRANSFAC - 39542174 39542190 2.0E-06 GCAGGCACTTAAAAATT 17 TLX1_NFIC_MA0119.1 JASPAR - 39542338 39542351 3.0E-06 TGGCAGCTGGCCAG 14 V_STAT1_05_M01260 TRANSFAC + 39546560 39546581 8.0E-06 GGTTTAAGGGAAACGGGCGAAA 22 V_ZIC1_05_M02939 TRANSFAC + 39542482 39542496 1.0E-06 ACTCACAGCATGAAT 15 V_NKX21_01_M01312 TRANSFAC - 39542175 39542190 6.0E-06 GCAGGCACTTAAAAAT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.