Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TGDS Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 23483 TDP-glucose 4,6-dehydratase chr13 - 95248011 - 95253511 95248511 Transcription Factor Binding Sites   Download all TFBS in the TGDS promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 95248803 95248820 1.0E-06 GCAATTTAAAAATGATTT 18 SPIC_ETS_full_monomeric_14_1 SELEX + 95247424 95247437 5.0E-06 GGAAAGGGGAAGCA 14 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 95248804 95248820 2.0E-06 CAATTTAAAAATGATTT 17 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX - 95248245 95248256 5.0E-06 CCTTTTCCCGCA 12 ZNF435_C2H2_full_dimeric_18_1 SELEX + 95248488 95248505 1.0E-06 CACGTTAACAGAGCAGCC 18 STAT1_MA0137.2 JASPAR + 95248664 95248678 0.0E+00 TTTTTCCCGGAAATG 15 STAT1_MA0137.2 JASPAR - 95248664 95248678 2.0E-06 CATTTCCGGGAAAAA 15 IRF7_IRF_DBD_trimeric_17_1 SELEX - 95248811 95248827 0.0E+00 AAAAAAAAAATCATTTT 17 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 95248809 95248822 9.0E-06 AAAAATCATTTTTA 14 Pax4_MA0068.1 JASPAR - 95248796 95248825 7.0E-06 AAAAAAAATCATTTTTAAATTGCAACCTCC 30 SPIB_ETS_DBD_monomeric_14_1 SELEX + 95247424 95247437 7.0E-06 GGAAAGGGGAAGCA 14 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 95248803 95248820 7.0E-06 GCAATTTAAAAATGATTT 18 Foxd3_MA0041.1 JASPAR + 95248816 95248827 7.0E-06 GATTTTTTTTTT 12 Stat3_MA0144.1 JASPAR - 95248666 95248675 5.0E-06 TTCCGGGAAA 10 SPI1_ETS_full_monomeric_14_1 SELEX + 95247424 95247437 5.0E-06 GGAAAGGGGAAGCA 14 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 95248803 95248820 2.0E-06 GCAATTTAAAAATGATTT 18 V_FOXP1_01_M00987 TRANSFAC + 95248808 95248827 8.0E-06 TTAAAAATGATTTTTTTTTT 20 V_CEBPG_Q6_M00622 TRANSFAC + 95247641 95247653 3.0E-06 TTGACTTAAGAAA 13 V_CEBPG_Q6_M00622 TRANSFAC - 95248822 95248834 9.0E-06 CCCACTAAAAAAA 13 V_STAT5A_Q6_M01890 TRANSFAC - 95248667 95248679 6.0E-06 GCATTTCCGGGAA 13 V_TEL1_02_M02070 TRANSFAC + 95248669 95248678 1.0E-06 CCCGGAAATG 10 V_STAT3_01_M00225 TRANSFAC + 95248661 95248681 2.0E-06 ACGTTTTTCCCGGAAATGCCA 21 V_STAT3_01_M00225 TRANSFAC - 95248661 95248681 0.0E+00 TGGCATTTCCGGGAAAAACGT 21 V_DBX1_01_M01483 TRANSFAC - 95248804 95248820 1.0E-05 AAATCATTTTTAAATTG 17 V_DBX1_01_M01483 TRANSFAC - 95248805 95248821 9.0E-06 AAAATCATTTTTAAATT 17 V_STAT3STAT3_Q3_M01220 TRANSFAC - 95248663 95248676 0.0E+00 TTTCCGGGAAAAAC 14 V_STAT3STAT3_Q3_M01220 TRANSFAC + 95248666 95248679 5.0E-06 TTTCCCGGAAATGC 14 V_HMGIY_Q3_M01010 TRANSFAC + 95248812 95248826 1.0E-06 AAATGATTTTTTTTT 15 V_HMGIY_Q3_M01010 TRANSFAC + 95248813 95248827 5.0E-06 AATGATTTTTTTTTT 15 V_FOXD3_01_M00130 TRANSFAC + 95248816 95248827 8.0E-06 GATTTTTTTTTT 12 V_BCL6_01_M01183 TRANSFAC + 95248805 95248820 7.0E-06 AATTTAAAAATGATTT 16 V_NERF_01_M01976 TRANSFAC + 95248669 95248678 5.0E-06 CCCGGAAATG 10 V_STAT_Q6_M00777 TRANSFAC - 95248668 95248680 1.0E-05 GGCATTTCCGGGA 13 V_MEF2_02_M00231 TRANSFAC + 95250675 95250696 9.0E-06 CTAAACTCTTAAAATAAGTTAC 22 V_ELF1_01_M01975 TRANSFAC + 95248669 95248678 6.0E-06 CCCGGAAATG 10 V_SP100_03_M02809 TRANSFAC + 95248665 95248678 8.0E-06 TTTTCCCGGAAATG 14 V_STAT5B_01_M00459 TRANSFAC + 95248664 95248678 1.0E-06 TTTTTCCCGGAAATG 15 V_STAT5B_01_M00459 TRANSFAC - 95248664 95248678 2.0E-06 CATTTCCGGGAAAAA 15 V_GKLF_02_M01588 TRANSFAC - 95248560 95248571 5.0E-06 GCCCCGCCCAGC 12 V_SP1_02_M01303 TRANSFAC + 95248832 95248842 8.0E-06 GGGGCGGGGAC 11 V_PU1_Q4_M01172 TRANSFAC - 95247425 95247443 1.0E-06 TGCACTTGCTTCCCCTTTC 19 V_TCFAP2E_04_M02926 TRANSFAC - 95248816 95248829 5.0E-06 TAAAAAAAAAAATC 14 V_TCFAP2E_04_M02926 TRANSFAC - 95248819 95248832 0.0E+00 CACTAAAAAAAAAA 14 V_HOXC13_01_M01317 TRANSFAC + 95250676 95250691 8.0E-06 TAAACTCTTAAAATAA 16 V_MEF2A_Q6_M02024 TRANSFAC - 95250681 95250690 1.0E-06 TATTTTAAGA 10 V_ELF2_02_M02054 TRANSFAC + 95248669 95248678 8.0E-06 CCCGGAAATG 10 V_NFY_C_M00209 TRANSFAC + 95248276 95248289 9.0E-06 ACTGCTTGGCTAGC 14 V_ELF4_04_M02850 TRANSFAC - 95248814 95248830 7.0E-06 CTAAAAAAAAAAATCAT 17 V_ELF4_04_M02850 TRANSFAC - 95248815 95248831 0.0E+00 ACTAAAAAAAAAAATCA 17 V_ELF4_04_M02850 TRANSFAC - 95248816 95248832 7.0E-06 CACTAAAAAAAAAAATC 17 V_ELF4_04_M02850 TRANSFAC - 95248817 95248833 4.0E-06 CCACTAAAAAAAAAAAT 17 V_ETV7_01_M02071 TRANSFAC + 95248669 95248678 5.0E-06 CCCGGAAATG 10 V_ZFP105_03_M02827 TRANSFAC - 95248814 95248828 8.0E-06 AAAAAAAAAAATCAT 15 V_ZFP105_03_M02827 TRANSFAC - 95248815 95248829 1.0E-06 TAAAAAAAAAAATCA 15 V_ZFP105_03_M02827 TRANSFAC - 95248817 95248831 1.0E-06 ACTAAAAAAAAAAAT 15 V_ZFP105_03_M02827 TRANSFAC - 95248818 95248832 5.0E-06 CACTAAAAAAAAAAA 15 V_GFI1_01_M00250 TRANSFAC - 95248804 95248827 9.0E-06 AAAAAAAAAATCATTTTTAAATTG 24 V_STAT1_01_M00224 TRANSFAC + 95248661 95248681 4.0E-06 ACGTTTTTCCCGGAAATGCCA 21 V_STAT1_01_M00224 TRANSFAC - 95248661 95248681 0.0E+00 TGGCATTTCCGGGAAAAACGT 21 V_OLF1_01_M00261 TRANSFAC + 95249836 95249857 4.0E-06 CGCATGTCCTTAGAGACTTGGC 22 V_MEF2_03_M00232 TRANSFAC + 95250675 95250696 7.0E-06 CTAAACTCTTAAAATAAGTTAC 22 V_HBP1_03_M02762 TRANSFAC + 95248697 95248712 6.0E-06 TTTATGAATGAGTACC 16 V_SPIB_01_M01204 TRANSFAC + 95247424 95247440 4.0E-06 GGAAAGGGGAAGCAAGT 17 V_PAX8_01_M00717 TRANSFAC + 95248695 95248709 1.0E-06 GATTTATGAATGAGT 15 V_MEF2_Q6_01_M00941 TRANSFAC - 95250682 95250693 6.0E-06 ACTTATTTTAAG 12 V_TEL1_01_M01993 TRANSFAC + 95248669 95248678 1.0E-06 CCCGGAAATG 10 V_STAT3_03_M01595 TRANSFAC - 95248662 95248677 2.0E-06 ATTTCCGGGAAAAACG 16 V_ELF4_01_M01979 TRANSFAC + 95248669 95248678 1.0E-06 CCCGGAAATG 10 V_PAX8_B_M00328 TRANSFAC + 95248694 95248711 1.0E-06 AGATTTATGAATGAGTAC 18 V_SOX17_04_M02904 TRANSFAC - 95248695 95248711 1.0E-06 GTACTCATTCATAAATC 17 V_MTF1_06_M02882 TRANSFAC - 95248819 95248832 5.0E-06 CACTAAAAAAAAAA 14 V_ZFP206_01_M01742 TRANSFAC + 95248583 95248593 4.0E-06 CGCGCAGGCGC 11 V_TCF4_Q5_M00671 TRANSFAC - 95248118 95248125 1.0E-05 CCTTTGAA 8 V_STAT_01_M00223 TRANSFAC + 95248667 95248675 7.0E-06 TTCCCGGAA 9 V_ASCL2_04_M02841 TRANSFAC - 95248829 95248844 3.0E-06 CTGTCCCCGCCCCACT 16 V_STAT1STAT1_Q3_M01212 TRANSFAC + 95248665 95248677 1.0E-06 TTTTCCCGGAAAT 13 V_STAT5A_01_M00457 TRANSFAC + 95248664 95248678 4.0E-06 TTTTTCCCGGAAATG 15 V_STAT5A_01_M00457 TRANSFAC - 95248664 95248678 5.0E-06 CATTTCCGGGAAAAA 15 V_SRF_06_M02916 TRANSFAC - 95248812 95248828 3.0E-06 AAAAAAAAAAATCATTT 17 V_SRF_06_M02916 TRANSFAC - 95248813 95248829 4.0E-06 TAAAAAAAAAAATCATT 17 V_SRF_06_M02916 TRANSFAC - 95248814 95248830 0.0E+00 CTAAAAAAAAAAATCAT 17 V_SRF_06_M02916 TRANSFAC - 95248815 95248831 0.0E+00 ACTAAAAAAAAAAATCA 17 V_SRF_06_M02916 TRANSFAC - 95248816 95248832 2.0E-06 CACTAAAAAAAAAAATC 17 V_SRF_06_M02916 TRANSFAC - 95248817 95248833 2.0E-06 CCACTAAAAAAAAAAAT 17 V_YY1_01_M00059 TRANSFAC - 95248806 95248822 3.0E-06 AAAAATCATTTTTAAAT 17 V_HOMEZ_01_M01429 TRANSFAC - 95248807 95248823 0.0E+00 AAAAAATCATTTTTAAA 17 V_ELF_02_M02053 TRANSFAC + 95248669 95248678 4.0E-06 CCCGGAAATG 10 V_PIT1_Q6_M00802 TRANSFAC + 95248715 95248732 8.0E-06 TTTTCATTCTTGTACTAC 18 V_MEF2_01_M00006 TRANSFAC + 95250680 95250695 7.0E-06 CTCTTAAAATAAGTTA 16 V_MEF2A_05_M01301 TRANSFAC - 95250682 95250693 3.0E-06 ACTTATTTTAAG 12 V_HMEF2_Q6_M00406 TRANSFAC + 95250680 95250695 9.0E-06 CTCTTAAAATAAGTTA 16 V_TCF3_05_M02920 TRANSFAC - 95248817 95248831 9.0E-06 ACTAAAAAAAAAAAT 15 V_TCF3_05_M02920 TRANSFAC - 95248819 95248833 1.0E-05 CCACTAAAAAAAAAA 15 V_STAT1_Q6_M01823 TRANSFAC - 95248666 95248675 1.0E-06 TTCCGGGAAA 10 V_STAT1_05_M01260 TRANSFAC - 95248657 95248678 1.0E-06 CATTTCCGGGAAAAACGTTCCA 22 V_PAX4_04_M00380 TRANSFAC - 95248799 95248828 6.0E-06 AAAAAAAAAAATCATTTTTAAATTGCAACC 30 V_ELF4_02_M02056 TRANSFAC + 95248669 95248678 3.0E-06 CCCGGAAATG 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.