Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ABCA5 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 23461 ATP-binding cassette, sub-family A (ABC1), member 5 chr17 - 67322823 - 67328323 67323323 Transcription Factor Binding Sites   Download all TFBS in the ABCA5 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 67322784 67322801 1.0E-06 TACATCAATATTTGTTTT 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 67322784 67322801 0.0E+00 AAAACAAATATTGATGTA 18 Foxa2_MA0047.2 JASPAR + 67323239 67323250 5.0E-06 TGTTGACTCAGT 12 NF-kappaB_MA0061.1 JASPAR + 67322642 67322651 1.0E-06 GGGAATTTCC 10 NF-kappaB_MA0061.1 JASPAR - 67322643 67322652 9.0E-06 GGGAAATTCC 10 ZNF306_C2H2_full_monomeric_14_1 SELEX + 67323148 67323161 1.0E-05 CAGGCTAGCCTCAA 14 POU3F3_POU_DBD_monomeric_12_1 SELEX - 67322504 67322515 2.0E-06 TTAAATAAATAA 12 Arx_homeodomain_DBD_dimeric_13_1 SELEX - 67322503 67322515 1.0E-05 TTAAATAAATAAG 13 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 67322503 67322514 4.0E-06 TAAATAAATAAG 12 POU3F2_POU_DBD_monomeric_13_1 SELEX - 67322504 67322516 1.0E-06 TTTAAATAAATAA 13 LHX2_homeodomain_DBD_dimeric_15_1 SELEX - 67322480 67322494 1.0E-05 TAATGAAGATAATAA 15 FOXL1_forkhead_full_dimeric_13_1 SELEX - 67322504 67322516 0.0E+00 TTTAAATAAATAA 13 FOXL1_forkhead_full_dimeric_13_1 SELEX - 67322791 67322803 6.0E-06 GGAAAACAAATAT 13 POU3F4_POU_DBD_monomeric_11_1 SELEX - 67322504 67322514 7.0E-06 TAAATAAATAA 11 FOXC1_forkhead_DBD_monomeric_11_1 SELEX - 67322504 67322514 1.0E-06 TAAATAAATAA 11 NFKB1_MA0105.1 JASPAR + 67322642 67322652 9.0E-06 GGGAATTTCCC 11 Esrrb_MA0141.1 JASPAR - 67323665 67323676 3.0E-06 GGGCCAAGGTCA 12 MSX1_homeodomain_full_monomeric_8_1 SELEX + 67322593 67322600 7.0E-06 CCAATTAA 8 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 67322786 67322799 1.0E-06 AACAAATATTGATG 14 Klf4_MA0039.2 JASPAR + 67323480 67323489 1.0E-05 AGGGTGGGGC 10 NFKB2_NFAT_DBD_dimeric_13_1 SELEX + 67322641 67322653 2.0E-06 AGGGAATTTCCCT 13 NFKB2_NFAT_DBD_dimeric_13_1 SELEX - 67322641 67322653 2.0E-06 AGGGAAATTCCCT 13 MSX2_homeodomain_DBD_monomeric_8_1 SELEX + 67322593 67322600 7.0E-06 CCAATTAA 8 REL_MA0101.1 JASPAR + 67322642 67322651 2.0E-06 GGGAATTTCC 10 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 67322786 67322799 3.0E-06 AACAAATATTGATG 14 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 67322505 67322515 4.0E-06 TTAAATAAATA 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 67322792 67322802 3.0E-06 GAAAACAAATA 11 RELA_MA0107.1 JASPAR + 67322642 67322651 1.0E-06 GGGAATTTCC 10 FOXI1_MA0042.1 JASPAR + 67322502 67322513 2.0E-06 ACTTATTTATTT 12 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 67322786 67322799 4.0E-06 CATCAATATTTGTT 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 67322786 67322799 2.0E-06 AACAAATATTGATG 14 BCL6B_C2H2_DBD_monomeric_17_1 SELEX - 67323372 67323388 1.0E-06 CGCTTTCTAGGAGCCCC 17 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 67322505 67322515 1.0E-06 TTAAATAAATA 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 67322792 67322802 4.0E-06 GAAAACAAATA 11 BSX_homeodomain_DBD_monomeric_8_1 SELEX + 67322593 67322600 7.0E-06 CCAATTAA 8 NFKB1_NFAT_DBD_dimeric_13_1 SELEX - 67322641 67322653 1.0E-05 AGGGAAATTCCCT 13 Foxd3_MA0041.1 JASPAR + 67322789 67322800 4.0E-06 CAATATTTGTTT 12 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 67322786 67322799 9.0E-06 CATCAATATTTGTT 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 67322786 67322799 4.0E-06 AACAAATATTGATG 14 Msx3_homeodomain_DBD_monomeric_8_1 SELEX + 67322593 67322600 7.0E-06 CCAATTAA 8 POU3F1_POU_DBD_monomeric_12_2 SELEX - 67322504 67322515 2.0E-06 TTAAATAAATAA 12 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 67322479 67322495 6.0E-06 GTTATTATCTTCATTAT 17 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX - 67322479 67322495 1.0E-06 ATAATGAAGATAATAAC 17 SPDEF_ETS_full_putative-multimer_16_1 SELEX - 67322798 67322813 5.0E-06 AGGGAAAGAAGGAAAA 16 FOXO3_forkhead_full_dimeric_14_1 SELEX - 67322470 67322483 3.0E-06 ATAACCACGTTTAC 14 POU3F3_POU_DBD_dimeric_12_1 SELEX - 67322504 67322515 8.0E-06 TTAAATAAATAA 12 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 67322505 67322517 4.0E-06 TTTTAAATAAATA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 67322792 67322804 2.0E-06 AGGAAAACAAATA 13 FOXB1_forkhead_DBD_monomeric_11_1 SELEX - 67322504 67322514 3.0E-06 TAAATAAATAA 11 FOXO1_forkhead_DBD_dimeric_14_1 SELEX - 67322470 67322483 5.0E-06 ATAACCACGTTTAC 14 V_NFAT_Q4_01_M00935 TRANSFAC - 67323965 67323974 1.0E-06 TTGGAAAATT 10 V_NFKAPPAB65_01_M00052 TRANSFAC + 67322642 67322651 1.0E-06 GGGAATTTCC 10 V_HNF3B_01_M00131 TRANSFAC + 67322500 67322514 0.0E+00 GGACTTATTTATTTA 15 V_NFKB_C_M00208 TRANSFAC + 67322641 67322652 2.0E-06 AGGGAATTTCCC 12 V_TST1_02_M01316 TRANSFAC - 67322501 67322517 5.0E-06 TTTTAAATAAATAAGTC 17 V_TST1_02_M01316 TRANSFAC + 67322502 67322518 9.0E-06 ACTTATTTATTTAAAAC 17 V_MSX3_01_M01341 TRANSFAC + 67322588 67322603 9.0E-06 CCGATCCAATTAAGTA 16 V_DBX1_01_M01483 TRANSFAC - 67322501 67322517 9.0E-06 TTTTAAATAAATAAGTC 17 V_DBX1_01_M01483 TRANSFAC + 67322505 67322521 4.0E-06 TATTTATTTAAAACGTA 17 V_FREAC7_01_M00293 TRANSFAC - 67322501 67322516 0.0E+00 TTTAAATAAATAAGTC 16 V_NFKB_Q6_01_M00774 TRANSFAC - 67322641 67322656 0.0E+00 GGGAGGGAAATTCCCT 16 V_BCL6_Q3_01_M02085 TRANSFAC - 67323377 67323386 1.0E-06 CTTTCTAGGA 10 V_XFD1_01_M00267 TRANSFAC - 67322501 67322514 1.0E-06 TAAATAAATAAGTC 14 V_FOXA2_04_M02749 TRANSFAC - 67322500 67322516 9.0E-06 TTTAAATAAATAAGTCC 17 V_FOXD3_01_M00130 TRANSFAC + 67322502 67322513 8.0E-06 ACTTATTTATTT 12 V_FOXD3_01_M00130 TRANSFAC + 67322789 67322800 2.0E-06 CAATATTTGTTT 12 V_BCL6_01_M01183 TRANSFAC + 67322483 67322498 8.0E-06 TTATCTTCATTATTTT 16 V_LRH1_Q5_01_M02098 TRANSFAC - 67323665 67323675 9.0E-06 GGCCAAGGTCA 11 V_FOXO4_02_M00476 TRANSFAC + 67322792 67322805 3.0E-06 TATTTGTTTTCCTT 14 V_IK_Q5_M01169 TRANSFAC - 67322650 67322659 1.0E-06 TTTGGGAGGG 10 V_RELBP52_01_M01239 TRANSFAC + 67322642 67322651 7.0E-06 GGGAATTTCC 10 V_FOXJ2_02_M00423 TRANSFAC + 67322785 67322798 0.0E+00 ACATCAATATTTGT 14 V_GABP_B_M00341 TRANSFAC + 67323459 67323470 8.0E-06 CCCGGAAGAGGA 12 V_FOXO3A_Q1_M01137 TRANSFAC - 67322792 67322803 8.0E-06 GGAAAACAAATA 12 V_P50P50_Q3_M01223 TRANSFAC + 67322640 67322652 2.0E-06 CAGGGAATTTCCC 13 V_P50P50_Q3_M01223 TRANSFAC - 67322642 67322654 3.0E-06 GAGGGAAATTCCC 13 V_HNF3_Q6_01_M01012 TRANSFAC + 67322787 67322804 1.0E-06 ATCAATATTTGTTTTCCT 18 V_FOXJ1_03_M02750 TRANSFAC - 67322790 67322805 7.0E-06 AAGGAAAACAAATATT 16 V_P50RELAP65_Q5_01_M01224 TRANSFAC + 67322643 67322654 0.0E+00 GGAATTTCCCTC 12 V_STAT6_01_M00494 TRANSFAC + 67322602 67322609 7.0E-06 TATTTCCA 8 V_HFH4_01_M00742 TRANSFAC + 67322789 67322801 3.0E-06 CAATATTTGTTTT 13 V_LHX3_01_M01471 TRANSFAC - 67322503 67322519 8.0E-06 CGTTTTAAATAAATAAG 17 V_HEN1_01_M00068 TRANSFAC - 67323253 67323274 5.0E-06 ACAGATCCCAGCTGGGTCACCC 22 V_COUPTF_Q6_M01036 TRANSFAC + 67323660 67323682 1.0E-06 GCGGGTGACCTTGGCCCACGGCC 23 V_LYF1_01_M00141 TRANSFAC - 67322651 67322659 9.0E-06 TTTGGGAGG 9 V_K2B_01_M01348 TRANSFAC + 67322589 67322605 7.0E-06 CGATCCAATTAAGTATT 17 V_NFAT2_01_M01748 TRANSFAC - 67322602 67322610 6.0E-06 ATGGAAATA 9 V_PAX7_01_M01339 TRANSFAC + 67322589 67322605 4.0E-06 CGATCCAATTAAGTATT 17 V_VSX1_01_M01335 TRANSFAC + 67322589 67322605 7.0E-06 CGATCCAATTAAGTATT 17 V_MEF2A_Q6_M02024 TRANSFAC + 67322509 67322518 5.0E-06 TATTTAAAAC 10 V_ELF4_04_M02850 TRANSFAC - 67322501 67322517 4.0E-06 TTTTAAATAAATAAGTC 17 V_ELF4_04_M02850 TRANSFAC - 67322502 67322518 4.0E-06 GTTTTAAATAAATAAGT 17 V_DBX2_01_M01360 TRANSFAC - 67322485 67322500 6.0E-06 CGAAAATAATGAAGAT 16 V_DBX2_01_M01360 TRANSFAC - 67322501 67322516 9.0E-06 TTTAAATAAATAAGTC 16 V_LMX1_01_M01409 TRANSFAC - 67322503 67322519 2.0E-06 CGTTTTAAATAAATAAG 17 V_SOX7_04_M02911 TRANSFAC + 67322476 67322497 7.0E-06 GTGGTTATTATCTTCATTATTT 22 V_NKX61_01_M00424 TRANSFAC - 67322591 67322603 0.0E+00 TACTTAATTGGAT 13 V_XFD3_01_M00269 TRANSFAC - 67323235 67323248 1.0E-05 TGAGTCAACAGACT 14 V_CREL_01_M00053 TRANSFAC + 67322642 67322651 2.0E-06 GGGAATTTCC 10 V_OLF1_01_M00261 TRANSFAC + 67323122 67323143 4.0E-06 CTCAACTCCCCCAGGGACGGCT 22 V_NFKB_Q6_M00194 TRANSFAC + 67322640 67322653 6.0E-06 CAGGGAATTTCCCT 14 V_SP1_Q6_M00196 TRANSFAC - 67323340 67323352 8.0E-06 AGGAGGCGGGGCG 13 V_ZF5_B_M00333 TRANSFAC + 67323399 67323411 8.0E-06 TACGGGCGCGCTT 13 V_HNF3_Q6_M00791 TRANSFAC - 67322503 67322515 5.0E-06 TTAAATAAATAAG 13 V_HNF3_Q6_M00791 TRANSFAC - 67322790 67322802 5.0E-06 GAAAACAAATATT 13 V_NKX25_02_M00241 TRANSFAC - 67322594 67322601 7.0E-06 CTTAATTG 8 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 67322505 67322515 2.0E-06 TATTTATTTAA 11 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 67322792 67322802 8.0E-06 TATTTGTTTTC 11 V_BCL6_Q3_M01171 TRANSFAC - 67323377 67323386 8.0E-06 CTTTCTAGGA 10 V_SREBP_Q6_M01168 TRANSFAC + 67323185 67323199 5.0E-06 CGCCTCACCTCAGGG 15 V_OCT1_04_M00138 TRANSFAC + 67322502 67322524 5.0E-06 ACTTATTTATTTAAAACGTAAAT 23 V_PIT1_01_M01465 TRANSFAC - 67322501 67322517 3.0E-06 TTTTAAATAAATAAGTC 17 V_PIT1_01_M01465 TRANSFAC + 67322502 67322518 4.0E-06 ACTTATTTATTTAAAAC 17 V_NKX3A_01_M00451 TRANSFAC + 67322595 67322606 0.0E+00 AATTAAGTATTT 12 V_ARID3A_04_M02735 TRANSFAC - 67322503 67322519 3.0E-06 CGTTTTAAATAAATAAG 17 V_ARID3A_04_M02735 TRANSFAC + 67322504 67322520 7.0E-06 TTATTTATTTAAAACGT 17 V_TBP_06_M02814 TRANSFAC - 67322501 67322516 5.0E-06 TTTAAATAAATAAGTC 16 V_TBP_06_M02814 TRANSFAC + 67322503 67322518 1.0E-05 CTTATTTATTTAAAAC 16 V_TBP_06_M02814 TRANSFAC + 67322505 67322520 1.0E-05 TATTTATTTAAAACGT 16 V_TBP_06_M02814 TRANSFAC - 67322505 67322520 2.0E-06 ACGTTTTAAATAAATA 16 V_LIM1_01_M01418 TRANSFAC - 67322503 67322519 2.0E-06 CGTTTTAAATAAATAAG 17 V_LIM1_01_M01418 TRANSFAC + 67322589 67322605 1.0E-05 CGATCCAATTAAGTATT 17 V_FOXO1_Q5_M01216 TRANSFAC - 67322794 67322802 5.0E-06 GAAAACAAA 9 V_IRF7_01_M00453 TRANSFAC - 67322788 67322805 7.0E-06 AAGGAAAACAAATATTGA 18 V_SF1_Q6_01_M01132 TRANSFAC + 67323665 67323673 7.0E-06 TGACCTTGG 9 V_HFH8_01_M00294 TRANSFAC + 67322502 67322514 3.0E-06 ACTTATTTATTTA 13 V_TAL1_01_M01591 TRANSFAC + 67322681 67322693 8.0E-06 TTTTCTTCTCACT 13 V_BRN4_01_M01473 TRANSFAC - 67322501 67322517 3.0E-06 TTTTAAATAAATAAGTC 17 V_BRN4_01_M01473 TRANSFAC + 67322502 67322518 3.0E-06 ACTTATTTATTTAAAAC 17 V_BRN4_01_M01473 TRANSFAC + 67322591 67322607 1.0E-05 ATCCAATTAAGTATTTC 17 V_CNOT3_01_M01253 TRANSFAC - 67323279 67323288 8.0E-06 GGCCGCGCCC 10 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC + 67323479 67323487 8.0E-06 GAGGGTGGG 9 V_FOXL1_04_M02753 TRANSFAC - 67322500 67322516 4.0E-06 TTTAAATAAATAAGTCC 17 V_GATA3_02_M00350 TRANSFAC - 67322481 67322490 1.0E-05 GAAGATAATA 10 V_ERR2_01_M01589 TRANSFAC - 67323662 67323673 1.0E-06 CCAAGGTCACCC 12 V_NKX22_01_M00485 TRANSFAC + 67322597 67322606 2.0E-06 TTAAGTATTT 10 V_LMX1B_01_M01363 TRANSFAC + 67322503 67322519 4.0E-06 CTTATTTATTTAAAACG 17 V_LMX1B_01_M01363 TRANSFAC - 67322504 67322520 9.0E-06 ACGTTTTAAATAAATAA 17 V_FOXO3_01_M00477 TRANSFAC + 67322792 67322805 2.0E-06 TATTTGTTTTCCTT 14 V_FOXA2_03_M02260 TRANSFAC + 67323239 67323250 5.0E-06 TGTTGACTCAGT 12 V_FOX_Q2_M00809 TRANSFAC + 67322789 67322801 1.0E-06 CAATATTTGTTTT 13 V_T3RBETA_Q6_01_M02119 TRANSFAC - 67323683 67323699 4.0E-06 GAGGCAGATGAGGAGAG 17 V_MEF3_B_M00319 TRANSFAC - 67322525 67322537 3.0E-06 TCCTCAGGCTTCG 13 V_HOXC5_01_M01454 TRANSFAC + 67322589 67322605 9.0E-06 CGATCCAATTAAGTATT 17 V_NFKAPPAB_01_M00054 TRANSFAC + 67322642 67322651 1.0E-06 GGGAATTTCC 10 V_NFKAPPAB_01_M00054 TRANSFAC - 67322643 67322652 7.0E-06 GGGAAATTCC 10 V_SOX14_04_M02901 TRANSFAC - 67322645 67322661 1.0E-06 AGTTTGGGAGGGAAATT 17 V_HFH3_01_M00289 TRANSFAC + 67322502 67322514 0.0E+00 ACTTATTTATTTA 13 V_FOXJ2_01_M00422 TRANSFAC - 67322500 67322517 3.0E-06 TTTTAAATAAATAAGTCC 18 V_FOXJ2_01_M00422 TRANSFAC - 67322787 67322804 2.0E-06 AGGAAAACAAATATTGAT 18 V_ERR1_Q2_01_M02093 TRANSFAC - 67323662 67323672 3.0E-06 CAAGGTCACCC 11 V_NFE2_Q6_M02104 TRANSFAC - 67323235 67323250 6.0E-06 ACTGAGTCAACAGACT 16 V_HNF3B_Q6_M02014 TRANSFAC + 67322504 67322512 1.0E-05 TTATTTATT 9 V_GLI_Q2_M01037 TRANSFAC + 67323887 67323898 9.0E-06 CCTGGGAGGTCC 12 V_UF1H3BETA_Q6_M01068 TRANSFAC - 67323849 67323862 6.0E-06 GGCTGGGGAGGGGA 14 V_LHX5_01_M01353 TRANSFAC - 67322503 67322519 7.0E-06 CGTTTTAAATAAATAAG 17 V_OG2_02_M01441 TRANSFAC + 67322589 67322605 1.0E-06 CGATCCAATTAAGTATT 17 V_FOXK1_03_M02752 TRANSFAC - 67322791 67322807 3.0E-06 AGAAGGAAAACAAATAT 17 V_PAX4_04_M00380 TRANSFAC - 67322467 67322496 9.0E-06 AATAATGAAGATAATAACCACGTTTACTTT 30 V_TCF4_01_M01705 TRANSFAC - 67323935 67323943 5.0E-06 TCTTTGATG 9

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.