Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TDRD7 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 23424 tudor domain containing 7 chr9 + 100169301 - 100174801 100174301 Transcription Factor Binding Sites   Download all TFBS in the TDRD7 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 100174146 100174164 0.0E+00 TGTCCACCAGGAGGCGCTC 19 THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX + 100169283 100169302 3.0E-06 CTGACCTTATGTAAGCAAAA 2 THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX - 100169283 100169302 4.0E-06 TTTTGCTTACATAAGGTCAG 2 IRF7_IRF_DBD_dimeric_14_1 SELEX + 100174417 100174430 5.0E-06 GGGAAACCGAAAGT 14 POU3F3_POU_DBD_monomeric_12_1 SELEX + 100169331 100169342 8.0E-06 ATACATAATTTC 12 POU3F2_POU_DBD_monomeric_13_1 SELEX + 100169330 100169342 5.0E-06 TATACATAATTTC 13 ELF4_ETS_full_monomeric_12_1 SELEX + 100174878 100174889 8.0E-06 GACCAGGAAGTG 12 IRF8_IRF_full_dimeric_14_1 SELEX + 100174417 100174430 1.0E-06 GGGAAACCGAAAGT 14 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 100175015 100175025 5.0E-06 AGCCCCAGGCA 11 Lhx8_homeodomain_DBD_dimeric_12_1 SELEX + 100169386 100169397 3.0E-06 TATTTGCAATCA 12 Lhx8_homeodomain_DBD_dimeric_12_1 SELEX - 100169386 100169397 3.0E-06 TGATTGCAAATA 12 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 100175015 100175025 6.0E-06 AGCCCCAGGCA 11 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 100169380 100169393 7.0E-06 TAAAATTATTTGCA 14 ZIC4_C2H2_DBD_monomeric_15_1 SELEX + 100174100 100174114 8.0E-06 CGCCCCCTGCTGAGT 15 IRF1_MA0050.1 JASPAR + 100174419 100174430 3.0E-06 GAAACCGAAAGT 12 ELF3_ETS_full_monomeric_13_1 SELEX + 100174878 100174890 7.0E-06 GACCAGGAAGTGG 13 ESR1_MA0112.2 JASPAR + 100174304 100174323 1.0E-05 AGCCGAGGCCAGGCTGCCCT 20 ESR1_MA0112.2 JASPAR - 100174309 100174328 6.0E-06 CTTCGAGGGCAGCCTGGCCT 20 ZIC3_C2H2_full_monomeric_15_1 SELEX + 100174100 100174114 4.0E-06 CGCCCCCTGCTGAGT 15 CTCF_C2H2_full_monomeric_17_1 SELEX - 100174147 100174163 2.0E-06 AGCGCCTCCTGGTGGAC 17 CTCF_C2H2_full_monomeric_17_1 SELEX - 100174221 100174237 1.0E-06 GTCGCCACCTAGCGGTT 17 IRF9_IRF_full_trimeric_15_1 SELEX + 100174416 100174430 4.0E-06 GGGGAAACCGAAAGT 15 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 100174418 100174432 5.0E-06 GGAAACCGAAAGTGG 15 POU3F1_POU_DBD_monomeric_12_2 SELEX + 100169331 100169342 8.0E-06 ATACATAATTTC 12 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 100175015 100175025 6.0E-06 AGCCCCAGGCA 11 ELF5_ETS_full_monomeric_11_1 SELEX + 100174879 100174889 4.0E-06 ACCAGGAAGTG 11 ELF3_ETS_DBD_monomeric_12_1 SELEX + 100174878 100174889 6.0E-06 GACCAGGAAGTG 12 IRF4_IRF_full_dimeric_15_1 SELEX + 100174417 100174431 5.0E-06 GGGAAACCGAAAGTG 15 IRF5_IRF_full_dimeric_14_1 SELEX + 100174417 100174430 7.0E-06 GGGAAACCGAAAGT 14 IRF3_IRF_full_trimeric_21_1 SELEX + 100174411 100174431 7.0E-06 GGTGCGGGGAAACCGAAAGTG 21 NRF1_NRF_full_dimeric_12_1 SELEX + 100174291 100174302 8.0E-06 CGCGCGTGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 100174291 100174302 7.0E-06 TGCGCACGCGCG 12 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 100169291 100169303 8.0E-06 ATGTAAGCAAAAA 3 FOXL1_MA0033.1 JASPAR + 100169330 100169337 5.0E-06 TATACATA 8 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 100175015 100175025 6.0E-06 AGCCCCAGGCA 11 ZIC1_C2H2_full_monomeric_14_1 SELEX + 100174100 100174113 4.0E-06 CGCCCCCTGCTGAG 14 Zfx_MA0146.1 JASPAR - 100174909 100174922 6.0E-06 GCGGCTGCGGCCTG 14 V_MEQ_01_M02049 TRANSFAC + 100175045 100175053 9.0E-06 GACACACAT 9 V_AP2ALPHA_Q6_M01857 TRANSFAC - 100174627 100174637 2.0E-06 AGCCCCCGGCC 11 V_ESR1_01_M02261 TRANSFAC + 100174304 100174323 1.0E-05 AGCCGAGGCCAGGCTGCCCT 20 V_ESR1_01_M02261 TRANSFAC - 100174309 100174328 6.0E-06 CTTCGAGGGCAGCCTGGCCT 20 V_STAT3STAT3_Q3_M01220 TRANSFAC + 100174412 100174425 4.0E-06 GTGCGGGGAAACCG 14 V_BCL6_01_M01183 TRANSFAC + 100169375 100169390 4.0E-06 ATTGTTAAAATTATTT 16 V_ETS_B_M00340 TRANSFAC + 100174879 100174892 8.0E-06 ACCAGGAAGTGGTT 14 V_MAFB_03_M02879 TRANSFAC - 100169383 100169397 5.0E-06 TGATTGCAAATAATT 15 V_SP1_Q6_01_M00931 TRANSFAC + 100174330 100174339 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 100174345 100174354 4.0E-06 GGGGCGGGGC 10 V_IRF2_Q6_M01882 TRANSFAC + 100174417 100174432 3.0E-06 GGGAAACCGAAAGTGG 16 V_SOX11_04_M02899 TRANSFAC + 100169381 100169394 5.0E-06 AAAATTATTTGCAA 14 V_AP2_Q6_01_M00915 TRANSFAC + 100174172 100174184 9.0E-06 CGCCCCGCAGGCG 13 V_IRF3_05_M02767 TRANSFAC - 100174237 100174250 8.0E-06 GGGAAGGGAAACCG 14 V_IRF3_05_M02767 TRANSFAC + 100174418 100174431 1.0E-05 GGAAACCGAAAGTG 14 V_GKLF_02_M01588 TRANSFAC - 100174358 100174369 8.0E-06 GCCCCGCCCTGC 12 V_NERF_Q2_M00531 TRANSFAC + 100174878 100174895 6.0E-06 GACCAGGAAGTGGTTCCC 18 V_SP1_02_M01303 TRANSFAC + 100174365 100174375 8.0E-06 GGGGCGGGGGC 11 V_ETS_Q4_M00771 TRANSFAC - 100174881 100174892 0.0E+00 AACCACTTCCTG 12 V_SOX7_03_M02807 TRANSFAC - 100169366 100169387 6.0E-06 TAATTTTAACAATACCCCTATT 22 V_POU3F2_01_M00463 TRANSFAC + 100169331 100169344 5.0E-06 ATACATAATTTCAA 14 V_XFD3_01_M00269 TRANSFAC + 100169290 100169303 8.0E-06 TATGTAAGCAAAAA 3 V_E12_Q6_M00693 TRANSFAC + 100174551 100174561 4.0E-06 GACAGGTGCCG 11 V_IRF2_01_M00063 TRANSFAC + 100174418 100174430 1.0E-05 GGAAACCGAAAGT 13 V_SP1_Q6_M00196 TRANSFAC + 100174328 100174340 7.0E-06 GCGGGGCGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC + 100174343 100174355 4.0E-06 GCGGGGCGGGGCC 13 V_IRF_Q6_M00772 TRANSFAC - 100174419 100174433 6.0E-06 CCCACTTTCGGTTTC 15 V_ISRE_01_M00258 TRANSFAC + 100174237 100174251 4.0E-06 CGGTTTCCCTTCCCA 15 V_OCT1_04_M00138 TRANSFAC - 100169380 100169402 3.0E-06 TTATTTGATTGCAAATAATTTTA 23 V_TEL2_Q6_M00678 TRANSFAC - 100174881 100174890 6.0E-06 CCACTTCCTG 10 V_CTCF_02_M01259 TRANSFAC + 100174143 100174162 5.0E-06 CGTTGTCCACCAGGAGGCGC 20 V_CTCF_01_M01200 TRANSFAC + 100174145 100174164 2.0E-06 TTGTCCACCAGGAGGCGCTC 20 V_ICSBP_Q6_M00699 TRANSFAC + 100174420 100174431 4.0E-06 AAACCGAAAGTG 12 V_IRF7_01_M00453 TRANSFAC + 100174416 100174433 0.0E+00 GGGGAAACCGAAAGTGGG 18 V_SP4_Q5_M01273 TRANSFAC - 100174329 100174339 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC - 100174344 100174354 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC - 100174364 100174374 7.0E-06 CCCCCGCCCCG 11 V_ELF1_Q6_M00746 TRANSFAC + 100177608 100177619 8.0E-06 GTTAGAGGAAGC 12 V_GATA1_05_M00346 TRANSFAC + 100177618 100177627 2.0E-06 GCAGATAACA 10 V_FOXL1_02_M02857 TRANSFAC - 100169372 100169387 2.0E-06 TAATTTTAACAATACC 16 V_FOXL1_04_M02753 TRANSFAC + 100169288 100169304 7.0E-06 CTTATGTAAGCAAAAAG 4 V_NKX3A_02_M01383 TRANSFAC + 100169298 100169314 1.0E-05 CAAAAAGTACTCATGTG 14 V_HDX_01_M01333 TRANSFAC + 100169386 100169402 1.0E-06 TATTTGCAATCAAATAA 17 V_ZFP206_01_M01742 TRANSFAC - 100174292 100174302 3.0E-06 TGCGCACGCGC 11 V_NRF1_Q6_M00652 TRANSFAC + 100174293 100174302 6.0E-06 CGCGTGCGCA 10 V_ETS1_B_M00339 TRANSFAC + 100174880 100174894 0.0E+00 CCAGGAAGTGGTTCC 15 V_SRF_Q5_01_M00922 TRANSFAC + 100174081 100174095 4.0E-06 CCATAGAAGGAGCCA 15 V_SRF_Q4_M00810 TRANSFAC + 100174080 100174097 4.0E-06 CCCATAGAAGGAGCCACC 18 V_SRF_06_M02916 TRANSFAC + 100174030 100174046 8.0E-06 GTTGAAGAAAATAATGT 17 V_FOXO1_04_M01969 TRANSFAC - 100169341 100169360 9.0E-06 CTAAACTACAGCATGTTTGA 20 V_NFE2_01_M00037 TRANSFAC + 100174107 100174117 8.0E-06 TGCTGAGTCCC 11 V_SOX12_03_M02796 TRANSFAC + 100169373 100169386 7.0E-06 GTATTGTTAAAATT 14 V_FREAC4_01_M00292 TRANSFAC + 100169288 100169303 7.0E-06 CTTATGTAAGCAAAAA 3 V_SOX5_07_M02909 TRANSFAC + 100169378 100169394 9.0E-06 GTTAAAATTATTTGCAA 17 V_SP1_Q4_01_M00932 TRANSFAC + 100174343 100174355 6.0E-06 GCGGGGCGGGGCC 13 V_ELK1_03_M01163 TRANSFAC + 100174421 100174431 1.0E-05 AACCGAAAGTG 11 V_SOX5_04_M02910 TRANSFAC + 100169331 100169345 1.0E-05 ATACATAATTTCAAA 15 V_ATATA_B_M00311 TRANSFAC - 100175030 100175039 9.0E-06 TTACTTAAGC 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.